Non-Coding RNA Search

Cow genome map


           Conread name:
           rcbe26_b12.y1
        

               Conread position:
               1-252
               

               Cow position:
               chr1:31934221-31934480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               58, 189
               

               Conread position:
               1-253
               

               Cow position:
               chr1:61724315-61724053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               199
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               58, 14
               

               Conread position:
               1-254
               

               Cow position:
               chr1:42053617-42053363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               199
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               59, 212
               

               Conread position:
               1-255
               

               Cow position:
               chr1:15311576-15311840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               55, 191
               

               Conread position:
               1-255
               

               Cow position:
               chr1:22448876-22448616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 186
               

               Conread position:
               1-255
               

               Cow position:
               chr1:76019972-76019725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 72
               

               Conread position:
               1-259
               

               Cow position:
               chr1:34159543-34159810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               206
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               61, 24
               

               Conread position:
               1-259
               

               Cow position:
               chr1:63435095-63434831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               138, 81
               

               Conread position:
               1-261
               

               Cow position:
               chr1:56225186-56225444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 26
               

               Conread position:
               4-175
               

               Cow position:
               chr1:70828617-70828794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               24, 86
               

               Conread position:
               4-255
               

               Cow position:
               chr1:22728759-22729022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               55, 31
               

               Conread position:
               4-264
               

               Cow position:
               chr1:48444467-48444213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               201
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               60, 21
               

               Conread position:
               5-247
               

               Cow position:
               chr1:72012095-72011846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               191
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               28, 70
               

               Conread position:
               5-259
               

               Cow position:
               chr1:8334-8591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               54, 185
               

               Conread position:
               5-265
               

               Cow position:
               chr1:21954509-21954251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               26, 6
               

               Conread position:
               6-260
               

               Cow position:
               chr1:5409898-5409638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               185
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               49, 19
               

               Conread position:
               7-247
               

               Cow position:
               chr1:53595039-53595283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               183
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               52, 203
               

               Conread position:
               7-247
               

               Cow position:
               chr1:67821504-67821248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               185
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               29, 201
               

               Conread position:
               7-255
               

               Cow position:
               chr1:732211-731971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               52, 139
               

               Conread position:
               7-255
               

               Cow position:
               chr1:22467642-22467903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               201
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               24, 178
               

               Conread position:
               7-255
               

               Cow position:
               chr1:41696775-41697029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               196
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               132, 36
               

               Conread position:
               7-255
               

               Cow position:
               chr1:85361569-85361831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               198
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               52, 224
               

               Conread position:
               7-255
               

               Cow position:
               chr1:85596660-85596912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 51
               

               Conread position:
               7-258
               

               Cow position:
               chr1:71045465-71045728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               195
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               33, 68
               

               Conread position:
               7-258
               

               Cow position:
               chr1:81355989-81355735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               196
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               55, 189
               

               Conread position:
               7-259
               

               Cow position:
               chr1:63391058-63390796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               196
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               7-260
               

               Cow position:
               chr1:90868724-90868465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               202
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               36, 115
               

               Conread position:
               7-265
               

               Cow position:
               chr1:10719776-10719500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               26, 207
               

               Conread position:
               7-265
               

               Cow position:
               chr1:53308678-53308414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               52, 64
               

               Conread position:
               7-265
               

               Cow position:
               chr1:96964033-96964300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               204
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               52, 168
               

               Conread position:
               7-266
               

               Cow position:
               chr1:21577521-21577789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               63, 24
               

               Conread position:
               7-266
               

               Cow position:
               chr1:44164794-44165064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               192
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               59, 25
               

               Conread position:
               7-266
               

               Cow position:
               chr1:84282775-84283059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               52, 196
               

               Conread position:
               8-255
               

               Cow position:
               chr1:1877741-1878000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 196
               

               Conread position:
               8-260
               

               Cow position:
               chr1:4027576-4027843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               199
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               48, 189
               

               Conread position:
               8-265
               

               Cow position:
               chr1:53374149-53374412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 171
               

               Conread position:
               9-251
               

               Cow position:
               chr1:82378512-82378755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               176
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               43, 17
               

               Conread position:
               9-258
               

               Cow position:
               chr1:101547326-101547060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               50, 69
               

               Conread position:
               10-255
               

               Cow position:
               chr1:55357563-55357314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               189
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               133, 28
               

               Conread position:
               11-260
               

               Cow position:
               chr1:3323572-3323841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               200
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               14, 25
               

               Conread position:
               11-266
               

               Cow position:
               chr1:91039441-91039193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               54, 88
               

               Conread position:
               12-251
               

               Cow position:
               chr1:100421565-100421799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               47, 11
               

               Conread position:
               13-254
               

               Cow position:
               chr1:98708163-98708410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               186
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               31, 16
               

               Conread position:
               17-252
               

               Cow position:
               chr1:92437267-92437028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               42, 193
               

               Conread position:
               18-221
               

               Cow position:
               chr1:32631195-32631404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               167
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               115, 41
               

               Conread position:
               20-235
               

               Cow position:
               chr1:31348186-31347965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               13, 137
               

               Conread position:
               21-255
               

               Cow position:
               chr1:84240628-84240863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               185
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               38, 50
               

               Conread position:
               21-266
               

               Cow position:
               chr1:28176728-28176990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               186
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               41, 246
               

               Conread position:
               22-246
               

               Cow position:
               chr1:43380300-43380065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               37, 171
               

               Conread position:
               23-289
               

               Cow position:
               chr1:21131356-21131091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               204
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               34, 109
               

               Conread position:
               24-259
               

               Cow position:
               chr1:81913421-81913180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               35, 174
               

               Conread position:
               26-251
               

               Cow position:
               chr1:56711883-56711652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               114, 6
               

               Conread position:
               30-289
               

               Cow position:
               chr1:52488221-52487954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               115, 58
               

               Conread position:
               31-253
               

               Cow position:
               chr1:50679547-50679314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               27, 12
               

               Conread position:
               31-258
               

               Cow position:
               chr1:52506806-52506581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               178
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               28, 50
               

               Conread position:
               32-254
               

               Cow position:
               chr1:95327414-95327181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               29, 163
               

               Conread position:
               32-258
               

               Cow position:
               chr1:78794996-78794768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               27, 160
               

               Conread position:
               32-259
               

               Cow position:
               chr1:79278695-79278472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               171
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               116, 21
               

               Conread position:
               32-265
               

               Cow position:
               chr1:45535441-45535685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               190
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               27, 46
               

               Conread position:
               33-253
               

               Cow position:
               chr1:3137672-3137898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               16, 56
               

               Conread position:
               33-253
               

               Cow position:
               chr1:63905734-63905503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               25, 83
               

               Conread position:
               33-254
               

               Cow position:
               chr1:81868987-81868758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               26, 157
               

               Conread position:
               33-259
               

               Cow position:
               chr1:6165991-6166215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               170
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               26, 99
               

               Conread position:
               33-259
               

               Cow position:
               chr1:6941206-6941438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               25, 38
               

               Conread position:
               33-259
               

               Cow position:
               chr1:6958619-6958851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               25, 38
               

               Conread position:
               33-260
               

               Cow position:
               chr1:74084449-74084219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 71
               

               Conread position:
               34-255
               

               Cow position:
               chr1:76470400-76470626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               175
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               24, 99
               

               Conread position:
               35-252
               

               Cow position:
               chr1:16767343-16767115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               35-255
               

               Cow position:
               chr1:13413769-13413999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               24, 36
               

               Conread position:
               37-266
               

               Cow position:
               chr1:68827161-68826923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               183
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               24, 159
               

               Conread position:
               39-266
               

               Cow position:
               chr1:37707223-37706992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               20, 160
               

               Conread position:
               40-255
               

               Cow position:
               chr1:36931906-36932128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               19, 150
               

               Conread position:
               40-255
               

               Cow position:
               chr1:50931222-50931006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               19, 80
               

               Conread position:
               42-274
               

               Cow position:
               chr1:47233726-47233491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               16, 146
               

               Conread position:
               43-253
               

               Cow position:
               chr1:24655710-24655930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               16, 36
               

               Conread position:
               45-273
               

               Cow position:
               chr1:89485343-89485565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               43, 23
               

               Conread position:
               47-270
               

               Cow position:
               chr1:4293818-4294041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               17, 99
               

               Conread position:
               50-255
               

               Cow position:
               chr1:94403976-94404183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               149
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               89, 126
               

               Conread position:
               53-255
               

               Cow position:
               chr1:20287877-20288089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               82, 131
               

               Conread position:
               57-183
               

               Cow position:
               chr1:77891580-77891707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               104
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               12, 93
               

               Conread position:
               57-255
               

               Cow position:
               chr1:7442752-7442953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               89, 18
               

               Conread position:
               57-258
               

               Cow position:
               chr1:24597419-24597631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               89, 95
               

               Conread position:
               57-270
               

               Cow position:
               chr1:40531342-40531127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               103, 28
               

               Conread position:
               57-285
               

               Cow position:
               chr1:49839273-49839507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               180
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               12, 129
               

               Conread position:
               60-255
               

               Cow position:
               chr1:68951401-68951598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               77, 122
               

               Conread position:
               70-259
               

               Cow position:
               chr1:7971210-7971390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               90, 63
               

               Conread position:
               71-258
               

               Cow position:
               chr1:15333661-15333858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               70, 19
               

               Conread position:
               71-266
               

               Cow position:
               chr1:45673492-45673691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               151
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               72, 35
               

               Conread position:
               96-265
               

               Cow position:
               chr1:82443651-82443476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               43, 92
               

               Conread position:
               98-247
               

               Cow position:
               chr1:83594000-83593840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               123
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               31, 96
               

               Conread position:
               104-266
               

               Cow position:
               chr1:43703228-43703389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               54, 16
               

               Conread position:
               109-255
               

               Cow position:
               chr1:9533994-9534143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               114
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               39, 76
               

               Conread position:
               109-266
               

               Cow position:
               chr1:51684629-51684786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               124
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               49, 16
               

               Conread position:
               109-266
               

               Cow position:
               chr1:65318400-65318556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               117
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               49, 129
               

               Conread position:
               120-258
               

               Cow position:
               chr1:87095396-87095256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               109
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               6, 63
               

               Conread position:
               135-264
               

               Cow position:
               chr1:65909377-65909507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               106
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               23, 47
               

               Conread position:
               1-220
               

               Cow position:
               chr10:3698105-3698331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               58, 188
               

               Conread position:
               1-221
               

               Cow position:
               chr10:4310868-4311096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               58, 30
               

               Conread position:
               1-254
               

               Cow position:
               chr10:9082976-9083237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               198
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               58, 195
               

               Conread position:
               1-254
               

               Cow position:
               chr10:22048928-22049200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               200
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               32, 25
               

               Conread position:
               1-254
               

               Cow position:
               chr10:58718329-58718583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               58, 149
               

               Conread position:
               1-255
               

               Cow position:
               chr10:888606-888866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               202
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               12, 25
               

               Conread position:
               1-255
               

               Cow position:
               chr10:50016312-50016072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               58, 24
               

               Conread position:
               1-255
               

               Cow position:
               chr10:61588582-61588321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 191
               

               Conread position:
               1-259
               

               Cow position:
               chr10:48462663-48462393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               203
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               58, 44
               

               Conread position:
               1-260
               

               Cow position:
               chr10:40106794-40107050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 70
               

               Conread position:
               1-264
               

               Cow position:
               chr10:65132636-65132909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               1-265
               

               Cow position:
               chr10:50200381-50200665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               214
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               37, 134
               

               Conread position:
               4-253
               

               Cow position:
               chr10:29628273-29628011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 209
               

               Conread position:
               5-252
               

               Cow position:
               chr10:16598370-16598620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 176
               

               Conread position:
               6-251
               

               Cow position:
               chr10:5543568-5543311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               198
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               53, 193
               

               Conread position:
               7-215
               

               Cow position:
               chr10:15889173-15889384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               171
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               46, 103
               

               Conread position:
               7-221
               

               Cow position:
               chr10:22321210-22321431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               126, 52
               

               Conread position:
               7-247
               

               Cow position:
               chr10:46491346-46491106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               29, 15
               

               Conread position:
               7-253
               

               Cow position:
               chr10:28105378-28105144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               193
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               151, 25
               

               Conread position:
               7-255
               

               Cow position:
               chr10:20132843-20132585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               195
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               52, 19
               

               Conread position:
               7-255
               

               Cow position:
               chr10:21448212-21447965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               25, 168
               

               Conread position:
               7-255
               

               Cow position:
               chr10:29211641-29211899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               200
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               52, 206
               

               Conread position:
               7-255
               

               Cow position:
               chr10:54948438-54948194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               130, 50
               

               Conread position:
               7-259
               

               Cow position:
               chr10:9287752-9287997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               36, 18
               

               Conread position:
               7-259
               

               Cow position:
               chr10:17175716-17175980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               195
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               7-259
               

               Cow position:
               chr10:48377949-48377696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               55, 33
               

               Conread position:
               7-265
               

               Cow position:
               chr10:10721001-10720722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               33, 195
               

               Conread position:
               7-265
               

               Cow position:
               chr10:19104499-19104221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               210
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               52, 264
               

               Conread position:
               7-265
               

               Cow position:
               chr10:30456167-30455899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               52, 18
               

               Conread position:
               7-266
               

               Cow position:
               chr10:6986131-6986399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               38, 5
               

               Conread position:
               7-266
               

               Cow position:
               chr10:37528924-37528653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 164
               

               Conread position:
               7-272
               

               Cow position:
               chr10:11487292-11487031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               201
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               51, 20
               

               Conread position:
               8-247
               

               Cow position:
               chr10:804878-805129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               185
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               31, 169
               

               Conread position:
               8-250
               

               Cow position:
               chr10:49045528-49045779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               8-255
               

               Cow position:
               chr10:3998594-3998844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               194
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               138, 27
               

               Conread position:
               8-266
               

               Cow position:
               chr10:51306010-51306293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               26, 64
               

               Conread position:
               10-261
               

               Cow position:
               chr10:64876207-64876463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               49, 15
               

               Conread position:
               11-244
               

               Cow position:
               chr10:33915364-33915134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               182
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               48, 144
               

               Conread position:
               12-247
               

               Cow position:
               chr10:23886757-23886527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               178
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               119, 64
               

               Conread position:
               12-258
               

               Cow position:
               chr10:21082084-21082328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               5, 18
               

               Conread position:
               16-250
               

               Cow position:
               chr10:5607336-5607579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               43, 27
               

               Conread position:
               17-247
               

               Cow position:
               chr10:46829568-46829809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               182
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               21-259
               

               Cow position:
               chr10:9445313-9445069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               179
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               122, 173
               

               Conread position:
               23-212
               

               Cow position:
               chr10:28835930-28836120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               155
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               36, 48
               

               Conread position:
               23-247
               

               Cow position:
               chr10:8077453-8077214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               165
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               36, 192
               

               Conread position:
               24-228
               

               Cow position:
               chr10:15353624-15353415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               144
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               35, 142
               

               Conread position:
               32-258
               

               Cow position:
               chr10:17982897-17983129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               114, 25
               

               Conread position:
               32-259
               

               Cow position:
               chr10:15292980-15293212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               27, 64
               

               Conread position:
               32-259
               

               Cow position:
               chr10:24785813-24786050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               27, 110
               

               Conread position:
               32-259
               

               Cow position:
               chr10:49038266-49038524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               32-259
               

               Cow position:
               chr10:60032869-60032627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               11, 41
               

               Conread position:
               33-252
               

               Cow position:
               chr10:29920122-29919896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               28, 63
               

               Conread position:
               33-254
               

               Cow position:
               chr10:28933451-28933682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               27, 74
               

               Conread position:
               33-258
               

               Cow position:
               chr10:59664255-59664033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               26, 72
               

               Conread position:
               34-236
               

               Cow position:
               chr10:39646389-39646181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               101, 13
               

               Conread position:
               35-259
               

               Cow position:
               chr10:13311443-13311676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               23, 151
               

               Conread position:
               35-259
               

               Cow position:
               chr10:20505253-20505484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               26, 42
               

               Conread position:
               35-259
               

               Cow position:
               chr10:31266612-31266388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               178
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               123, 22
               

               Conread position:
               35-259
               

               Cow position:
               chr10:43438581-43438819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               35-267
               

               Cow position:
               chr10:29360619-29360861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               24, 134
               

               Conread position:
               36-259
               

               Cow position:
               chr10:41255700-41255929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               164
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               20, 50
               

               Conread position:
               37-250
               

               Cow position:
               chr10:9798480-9798262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               177
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               22, 142
               

               Conread position:
               37-259
               

               Cow position:
               chr10:15318604-15318828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               173
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               25, 12
               

               Conread position:
               39-180
               

               Cow position:
               chr10:2407393-2407249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               20, 32
               

               Conread position:
               39-255
               

               Cow position:
               chr10:57461081-57461295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               23, 80
               

               Conread position:
               39-260
               

               Cow position:
               chr10:42745628-42745863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               20, 133
               

               Conread position:
               41-247
               

               Cow position:
               chr10:24752875-24753082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               23, 147
               

               Conread position:
               44-265
               

               Cow position:
               chr10:29279165-29279392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               22, 39
               

               Conread position:
               45-261
               

               Cow position:
               chr10:58690627-58690838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               9, 103
               

               Conread position:
               49-253
               

               Cow position:
               chr10:49456349-49456149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               9, 100
               

               Conread position:
               50-259
               

               Cow position:
               chr10:32417095-32417298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               83, 18
               

               Conread position:
               57-260
               

               Cow position:
               chr10:52113929-52113725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               165
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               74, 125
               

               Conread position:
               57-261
               

               Cow position:
               chr10:43288133-43287921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               57-264
               

               Cow position:
               chr10:8169994-8170198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               145
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               76, 91
               

               Conread position:
               57-266
               

               Cow position:
               chr10:48388535-48388320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               26, 136
               

               Conread position:
               58-221
               

               Cow position:
               chr10:20997539-20997369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               88, 17
               

               Conread position:
               59-265
               

               Cow position:
               chr10:63276129-63276343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               166
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               61-265
               

               Cow position:
               chr10:6173100-6173307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               82, 118
               

               Conread position:
               61-266
               

               Cow position:
               chr10:35791673-35791882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               149
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               78, 126
               

               Conread position:
               64-247
               

               Cow position:
               chr10:36489762-36489951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               64-260
               

               Cow position:
               chr10:2462735-2462540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               64-266
               

               Cow position:
               chr10:22341308-22341519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               72, 125
               

               Conread position:
               65-259
               

               Cow position:
               chr10:43508739-43508936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               76, 52
               

               Conread position:
               71-259
               

               Cow position:
               chr10:22396005-22396196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               34, 113
               

               Conread position:
               75-270
               

               Cow position:
               chr10:32030070-32029878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               139
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               83, 59
               

               Conread position:
               88-255
               

               Cow position:
               chr10:38512941-38513115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               131
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               53, 93
               

               Conread position:
               95-253
               

               Cow position:
               chr10:46493229-46493059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               110-266
               

               Cow position:
               chr10:37534400-37534551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               48, 36
               

               Conread position:
               129-259
               

               Cow position:
               chr10:4484480-4484612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               104
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               8, 56
               

               Conread position:
               140-259
               

               Cow position:
               chr10:4164093-4164212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               99
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               18, 34
               

               Conread position:
               1-243
               

               Cow position:
               chr11:46451301-46451542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               191
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               58, 70
               

               Conread position:
               1-247
               

               Cow position:
               chr11:84891060-84890811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               196
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               138, 31
               

               Conread position:
               1-253
               

               Cow position:
               chr11:55744156-55744417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               199
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               58, 216
               

               Conread position:
               1-255
               

               Cow position:
               chr11:59872609-59872878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               58, 73
               

               Conread position:
               1-255
               

               Cow position:
               chr11:68570989-68570719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               205
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               58, 115
               

               Conread position:
               1-255
               

               Cow position:
               chr11:73512737-73512490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               195
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               58, 111
               

               Conread position:
               1-258
               

               Cow position:
               chr11:65495645-65495376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               1-258
               

               Cow position:
               chr11:74929463-74929733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               205
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               61, 193
               

               Conread position:
               1-259
               

               Cow position:
               chr11:25336754-25337025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               45, 85
               

               Conread position:
               1-259
               

               Cow position:
               chr11:34112946-34113214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               39, 128
               

               Conread position:
               1-259
               

               Cow position:
               chr11:49105736-49106008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               202
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               35, 75
               

               Conread position:
               1-265
               

               Cow position:
               chr11:67246489-67246749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               184
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               81, 53
               

               Conread position:
               1-265
               

               Cow position:
               chr11:68910170-68909895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 20
               

               Conread position:
               1-265
               

               Cow position:
               chr11:70383012-70382735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               206
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               58, 222
               

               Conread position:
               1-266
               

               Cow position:
               chr11:36848625-36848887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               200
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               136, 58
               

               Conread position:
               1-269
               

               Cow position:
               chr11:77751083-77750809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               202
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               63, 191
               

               Conread position:
               3-265
               

               Cow position:
               chr11:80530055-80530325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               196
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               4-266
               

               Cow position:
               chr11:27462700-27462434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               199
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               21, 29
               

               Conread position:
               5-221
               

               Cow position:
               chr11:84774804-84775019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 116
               

               Conread position:
               5-255
               

               Cow position:
               chr11:46398809-46399072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               22, 75
               

               Conread position:
               7-206
               

               Cow position:
               chr11:72870603-72870825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               170
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               51, 17
               

               Conread position:
               7-207
               

               Cow position:
               chr11:16795459-16795253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               52, 18
               

               Conread position:
               7-214
               

               Cow position:
               chr11:2343973-2344179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               151, 26
               

               Conread position:
               7-214
               

               Cow position:
               chr11:36986651-36986873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               179
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               52, 15
               

               Conread position:
               7-243
               

               Cow position:
               chr11:33413922-33414172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 162
               

               Conread position:
               7-251
               

               Cow position:
               chr11:63847540-63847791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               57, 182
               

               Conread position:
               7-253
               

               Cow position:
               chr11:15503790-15504052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               52, 38
               

               Conread position:
               7-254
               

               Cow position:
               chr11:4384314-4384566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 81
               

               Conread position:
               7-254
               

               Cow position:
               chr11:40467435-40467172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               7-255
               

               Cow position:
               chr11:3393521-3393265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               186
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               52, 43
               

               Conread position:
               7-255
               

               Cow position:
               chr11:42358813-42359059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               187
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               34, 54
               

               Conread position:
               7-255
               

               Cow position:
               chr11:57047274-57047023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               52, 88
               

               Conread position:
               7-257
               

               Cow position:
               chr11:18698562-18698826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               201
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               27, 15
               

               Conread position:
               7-259
               

               Cow position:
               chr11:53130504-53130762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 18
               

               Conread position:
               7-260
               

               Cow position:
               chr11:10076463-10076719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               196
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               52, 117
               

               Conread position:
               7-264
               

               Cow position:
               chr11:43913911-43914168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 68
               

               Conread position:
               7-265
               

               Cow position:
               chr11:34962751-34963021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               52, 64
               

               Conread position:
               7-265
               

               Cow position:
               chr11:67746966-67747241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               52, 184
               

               Conread position:
               7-265
               

               Cow position:
               chr11:81614940-81614684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               57, 25
               

               Conread position:
               7-266
               

               Cow position:
               chr11:31900737-31901004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 100
               

               Conread position:
               7-289
               

               Cow position:
               chr11:35275984-35276280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               33, 194
               

               Conread position:
               8-257
               

               Cow position:
               chr11:10095032-10095293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               200
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               51, 188
               

               Conread position:
               8-259
               

               Cow position:
               chr11:59463946-59463687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               27, 53
               

               Conread position:
               10-265
               

               Cow position:
               chr11:55014313-55014050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               179
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               49, 15
               

               Conread position:
               13-258
               

               Cow position:
               chr11:53719640-53719893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               21, 10
               

               Conread position:
               15-258
               

               Cow position:
               chr11:85764650-85764888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               40, 16
               

               Conread position:
               28-162
               

               Cow position:
               chr11:63434850-63434987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               112
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               29-221
               

               Cow position:
               chr11:36981278-36981480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               31-174
               

               Cow position:
               chr11:85678303-85678451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               114
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               32-254
               

               Cow position:
               chr11:11125376-11125608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               174
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               26, 163
               

               Conread position:
               32-255
               

               Cow position:
               chr11:10302475-10302243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               30, 85
               

               Conread position:
               32-259
               

               Cow position:
               chr11:8148178-8147948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               21, 66
               

               Conread position:
               32-259
               

               Cow position:
               chr11:48932869-48932634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               27, 39
               

               Conread position:
               32-259
               

               Cow position:
               chr11:57111594-57111356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               27, 39
               

               Conread position:
               32-259
               

               Cow position:
               chr11:83066209-83066445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               180
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               28, 157
               

               Conread position:
               32-278
               

               Cow position:
               chr11:25165159-25165412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               181
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               35, 149
               

               Conread position:
               33-234
               

               Cow position:
               chr11:79019801-79019597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               23, 88
               

               Conread position:
               33-246
               

               Cow position:
               chr11:35148883-35149101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               26, 46
               

               Conread position:
               33-258
               

               Cow position:
               chr11:30110686-30110912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               171, 35
               

               Conread position:
               33-258
               

               Cow position:
               chr11:38193866-38194104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               25, 172
               

               Conread position:
               33-259
               

               Cow position:
               chr11:42519459-42519690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               106, 164
               

               Conread position:
               35-255
               

               Cow position:
               chr11:6234162-6233933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               24, 156
               

               Conread position:
               35-255
               

               Cow position:
               chr11:81300896-81300664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               23, 160
               

               Conread position:
               35-266
               

               Cow position:
               chr11:48474425-48474661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               184
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               24, 73
               

               Conread position:
               36-255
               

               Cow position:
               chr11:55761597-55761817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               23, 35
               

               Conread position:
               37-183
               

               Cow position:
               chr11:39431170-39431021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               114
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               37-255
               

               Cow position:
               chr11:65827013-65826796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               22, 83
               

               Conread position:
               37-265
               

               Cow position:
               chr11:45632046-45631803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               22, 157
               

               Conread position:
               39-266
               

               Cow position:
               chr11:42003233-42002987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               98, 230
               

               Conread position:
               40-265
               

               Cow position:
               chr11:75748157-75748390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               178
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               19, 142
               

               Conread position:
               41-247
               

               Cow position:
               chr11:71309806-71309589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               18, 161
               

               Conread position:
               43-258
               

               Cow position:
               chr11:62155355-62155577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               78, 28
               

               Conread position:
               43-266
               

               Cow position:
               chr11:377926-377686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               16, 157
               

               Conread position:
               44-259
               

               Cow position:
               chr11:79728948-79728719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               181
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               15, 154
               

               Conread position:
               46-260
               

               Cow position:
               chr11:12555690-12555460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               89, 217
               

               Conread position:
               49-252
               

               Cow position:
               chr11:36799562-36799358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               156
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               97, 19
               

               Conread position:
               50-258
               

               Cow position:
               chr11:34032461-34032252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               168
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               87, 21
               

               Conread position:
               59-255
               

               Cow position:
               chr11:37100616-37100409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               82, 200
               

               Conread position:
               60-258
               

               Cow position:
               chr11:19247450-19247250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               79, 106
               

               Conread position:
               63-244
               

               Cow position:
               chr11:3726033-3726225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               147
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               72-259
               

               Cow position:
               chr11:62808892-62808698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               67, 116
               

               Conread position:
               73-255
               

               Cow position:
               chr11:57725071-57724876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               81-265
               

               Cow position:
               chr11:38874636-38874446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               59, 23
               

               Conread position:
               87-258
               

               Cow position:
               chr11:33348413-33348233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               52, 104
               

               Conread position:
               94-265
               

               Cow position:
               chr11:2811945-2811774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               37, 89
               

               Conread position:
               99-259
               

               Cow position:
               chr11:52983474-52983627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               79, 47
               

               Conread position:
               112-259
               

               Cow position:
               chr11:29786803-29786654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               36, 73
               

               Conread position:
               121-259
               

               Cow position:
               chr11:53511894-53512034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               106
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               36, 63
               

               Conread position:
               135-259
               

               Cow position:
               chr11:15525780-15525909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               107
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               23, 80
               

               Conread position:
               1-245
               

               Cow position:
               chr12:2512191-2512443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               92, 58
               

               Conread position:
               1-254
               

               Cow position:
               chr12:6226968-6226725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               131, 66
               

               Conread position:
               1-258
               

               Cow position:
               chr12:7000941-7000675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               199
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               40, 139
               

               Conread position:
               1-258
               

               Cow position:
               chr12:28650616-28650884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               22, 80
               

               Conread position:
               1-259
               

               Cow position:
               chr12:8869221-8868947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               8, 28
               

               Conread position:
               1-265
               

               Cow position:
               chr12:22516073-22515800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               58, 70
               

               Conread position:
               1-266
               

               Cow position:
               chr12:2286243-2286524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               208
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               19, 196
               

               Conread position:
               1-266
               

               Cow position:
               chr12:3568613-3568881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               194
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               49, 24
               

               Conread position:
               1-266
               

               Cow position:
               chr12:9710542-9710272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               38, 119
               

               Conread position:
               4-255
               

               Cow position:
               chr12:24440478-24440744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               196
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               55, 193
               

               Conread position:
               5-259
               

               Cow position:
               chr12:5800705-5800963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               198
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               123, 182
               

               Conread position:
               6-255
               

               Cow position:
               chr12:12017545-12017804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               202
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               52, 26
               

               Conread position:
               7-247
               

               Cow position:
               chr12:34385845-34385595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 186
               

               Conread position:
               7-255
               

               Cow position:
               chr12:31959562-31959813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               183
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               52, 156
               

               Conread position:
               7-255
               

               Cow position:
               chr12:42254330-42254593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               52, 20
               

               Conread position:
               7-256
               

               Cow position:
               chr12:40158567-40158311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               190
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               57, 16
               

               Conread position:
               7-258
               

               Cow position:
               chr12:19872110-19872354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               191
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               52, 18
               

               Conread position:
               7-258
               

               Cow position:
               chr12:42181469-42181209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               194
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               52, 12
               

               Conread position:
               7-259
               

               Cow position:
               chr12:9414097-9413852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 139
               

               Conread position:
               7-259
               

               Cow position:
               chr12:30753395-30753653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               197
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               16, 78
               

               Conread position:
               7-265
               

               Cow position:
               chr12:19865911-19866178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 69
               

               Conread position:
               7-272
               

               Cow position:
               chr12:34466327-34466064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               197
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               177, 16
               

               Conread position:
               11-258
               

               Cow position:
               chr12:34473935-34473695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               179
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               45, 7
               

               Conread position:
               13-198
               

               Cow position:
               chr12:35136194-35136391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               46, 150
               

               Conread position:
               13-245
               

               Cow position:
               chr12:31228254-31228490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               126, 40
               

               Conread position:
               23-252
               

               Cow position:
               chr12:36568366-36568137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               36, 67
               

               Conread position:
               27-259
               

               Cow position:
               chr12:30805543-30805784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               5, 142
               

               Conread position:
               28-259
               

               Cow position:
               chr12:18518361-18518595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               31, 161
               

               Conread position:
               31-259
               

               Cow position:
               chr12:33457843-33458075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               28, 14
               

               Conread position:
               32-255
               

               Cow position:
               chr12:30590471-30590693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               26, 39
               

               Conread position:
               33-252
               

               Cow position:
               chr12:36012913-36012693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               26, 40
               

               Conread position:
               33-265
               

               Cow position:
               chr12:6720017-6720259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               30, 50
               

               Conread position:
               33-270
               

               Cow position:
               chr12:17031316-17031556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               182
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               26, 90
               

               Conread position:
               35-259
               

               Cow position:
               chr12:37994028-37993793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               175
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               21, 36
               

               Conread position:
               37-259
               

               Cow position:
               chr12:6411029-6410804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               22, 149
               

               Conread position:
               39-258
               

               Cow position:
               chr12:3510266-3510492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               17, 31
               

               Conread position:
               40-255
               

               Cow position:
               chr12:29694335-29694120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               16, 33
               

               Conread position:
               40-255
               

               Cow position:
               chr12:40270384-40270166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               19, 80
               

               Conread position:
               43-250
               

               Cow position:
               chr12:31532696-31532489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               92, 121
               

               Conread position:
               43-266
               

               Cow position:
               chr12:9914494-9914726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               16, 94
               

               Conread position:
               44-264
               

               Cow position:
               chr12:3950645-3950412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               15, 155
               

               Conread position:
               57-253
               

               Cow position:
               chr12:22047192-22047395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               153
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               80, 11
               

               Conread position:
               66-258
               

               Cow position:
               chr12:24107806-24107616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               56, 5
               

               Conread position:
               70-252
               

               Cow position:
               chr12:42283102-42282910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               143
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               57, 123
               

               Conread position:
               72-255
               

               Cow position:
               chr12:3994686-3994882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               77-253
               

               Cow position:
               chr12:43351582-43351759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               127
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               64, 109
               

               Conread position:
               130-252
               

               Cow position:
               chr12:28748739-28748863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               96
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               135-259
               

               Cow position:
               chr12:3906278-3906403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               100
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               25, 53
               

               Conread position:
               1-246
               

               Cow position:
               chr13:20378057-20378306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 56
               

               Conread position:
               1-251
               

               Cow position:
               chr13:9974782-9975051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               33, 201
               

               Conread position:
               1-253
               

               Cow position:
               chr13:60974359-60974105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 182
               

               Conread position:
               1-255
               

               Cow position:
               chr13:3003728-3003462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               192
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               58, 24
               

               Conread position:
               1-255
               

               Cow position:
               chr13:30651459-30651199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 119
               

               Conread position:
               1-259
               

               Cow position:
               chr13:12546623-12546892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               202
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               65, 195
               

               Conread position:
               1-260
               

               Cow position:
               chr13:21276139-21275873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 190
               

               Conread position:
               1-268
               

               Cow position:
               chr13:27524978-27525259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               207
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               63, 185
               

               Conread position:
               4-253
               

               Cow position:
               chr13:562856-563119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               49, 180
               

               Conread position:
               4-255
               

               Cow position:
               chr13:2774399-2774148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               190
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               64, 21
               

               Conread position:
               4-259
               

               Cow position:
               chr13:5091380-5091649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               204
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               55, 192
               

               Conread position:
               4-260
               

               Cow position:
               chr13:60967045-60966783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 211
               

               Conread position:
               4-264
               

               Cow position:
               chr13:60690438-60690715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               210
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               54, 194
               

               Conread position:
               4-265
               

               Cow position:
               chr13:20879556-20879813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 35
               

               Conread position:
               4-265
               

               Cow position:
               chr13:37981471-37981734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 146
               

               Conread position:
               6-216
               

               Cow position:
               chr13:60436604-60436826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               172
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               7-172
               

               Cow position:
               chr13:22076354-22076185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               7-175
               

               Cow position:
               chr13:10928715-10928893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               52, 18
               

               Conread position:
               7-221
               

               Cow position:
               chr13:43138951-43139172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               169
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               133, 64
               

               Conread position:
               7-252
               

               Cow position:
               chr13:6606742-6606999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               197
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               52, 190
               

               Conread position:
               7-255
               

               Cow position:
               chr13:8362468-8362727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               52, 213
               

               Conread position:
               7-255
               

               Cow position:
               chr13:12448710-12448974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               204
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               36, 66
               

               Conread position:
               7-255
               

               Cow position:
               chr13:15869395-15869143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 20
               

               Conread position:
               7-255
               

               Cow position:
               chr13:32017245-32017505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               199
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               52, 63
               

               Conread position:
               7-255
               

               Cow position:
               chr13:46182053-46181812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               130, 23
               

               Conread position:
               7-258
               

               Cow position:
               chr13:1231928-1231663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               191
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               36, 75
               

               Conread position:
               7-258
               

               Cow position:
               chr13:26479939-26480195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               52, 18
               

               Conread position:
               7-259
               

               Cow position:
               chr13:10988796-10989059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               124, 61
               

               Conread position:
               7-259
               

               Cow position:
               chr13:20666110-20666367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               52, 67
               

               Conread position:
               7-259
               

               Cow position:
               chr13:21039325-21039584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               20, 26
               

               Conread position:
               7-259
               

               Cow position:
               chr13:25434851-25435103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 141
               

               Conread position:
               7-265
               

               Cow position:
               chr13:5752145-5752415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               201
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               52, 186
               

               Conread position:
               7-266
               

               Cow position:
               chr13:1042678-1042955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 269
               

               Conread position:
               7-266
               

               Cow position:
               chr13:25531512-25531777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 54
               

               Conread position:
               7-266
               

               Cow position:
               chr13:37945942-37946197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 50
               

               Conread position:
               8-263
               

               Cow position:
               chr13:6616471-6616738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               203
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               51, 176
               

               Conread position:
               9-253
               

               Cow position:
               chr13:6079143-6079395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               194
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               50, 174
               

               Conread position:
               12-255
               

               Cow position:
               chr13:41154780-41155011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               7, 26
               

               Conread position:
               19-255
               

               Cow position:
               chr13:15041206-15041453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               40, 176
               

               Conread position:
               23-253
               

               Cow position:
               chr13:11260515-11260293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               24, 57
               

               Conread position:
               32-255
               

               Cow position:
               chr13:26261541-26261778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               27, 164
               

               Conread position:
               32-265
               

               Cow position:
               chr13:20649734-20649974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 25
               

               Conread position:
               33-220
               

               Cow position:
               chr13:23479281-23479083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               151
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               29, 152
               

               Conread position:
               33-250
               

               Cow position:
               chr13:3315421-3315652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               26, 144
               

               Conread position:
               33-254
               

               Cow position:
               chr13:48251740-48251964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               26, 115
               

               Conread position:
               33-259
               

               Cow position:
               chr13:4664609-4664849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               36-259
               

               Cow position:
               chr13:38012610-38012374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               23, 162
               

               Conread position:
               37-266
               

               Cow position:
               chr13:8201237-8201472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               22, 43
               

               Conread position:
               40-258
               

               Cow position:
               chr13:5278943-5279169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               19, 149
               

               Conread position:
               40-259
               

               Cow position:
               chr13:16024833-16024607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               19, 31
               

               Conread position:
               44-260
               

               Cow position:
               chr13:2462991-2463217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               20, 6
               

               Conread position:
               44-265
               

               Cow position:
               chr13:10924665-10924903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               174
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               15, 53
               

               Conread position:
               45-255
               

               Cow position:
               chr13:2339669-2339455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               15, 161
               

               Conread position:
               49-260
               

               Cow position:
               chr13:54093973-54093760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               171
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 113
               

               Conread position:
               50-253
               

               Cow position:
               chr13:43184640-43184849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               19, 137
               

               Conread position:
               50-255
               

               Cow position:
               chr13:47963969-47964174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               91, 59
               

               Conread position:
               50-289
               

               Cow position:
               chr13:34556100-34556353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               51-255
               

               Cow position:
               chr13:13176880-13176672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               58, 134
               

               Conread position:
               52-273
               

               Cow position:
               chr13:20530913-20531144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               17, 26
               

               Conread position:
               57-258
               

               Cow position:
               chr13:15192669-15192872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               163
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               84, 126
               

               Conread position:
               57-266
               

               Cow position:
               chr13:12207268-12207054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               80, 146
               

               Conread position:
               58-254
               

               Cow position:
               chr13:20839792-20839585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               6, 136
               

               Conread position:
               61-273
               

               Cow position:
               chr13:30026333-30026114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               76-259
               

               Cow position:
               chr13:46112173-46111983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               134
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               82-259
               

               Cow position:
               chr13:24230413-24230226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               82-266
               

               Cow position:
               chr13:52749288-52749468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               140
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               75, 16
               

               Conread position:
               85-259
               

               Cow position:
               chr13:23512556-23512384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               132
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               73, 49
               

               Conread position:
               87-265
               

               Cow position:
               chr13:8652242-8652426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               14, 87
               

               Conread position:
               91-258
               

               Cow position:
               chr13:15991031-15991213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               135
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               93-253
               

               Cow position:
               chr13:14771650-14771478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               46, 102
               

               Conread position:
               101-273
               

               Cow position:
               chr13:5758164-5758337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               51, 44
               

               Conread position:
               121-260
               

               Cow position:
               chr13:4420503-4420360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               108
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               1-237
               

               Cow position:
               chr14:8982232-8982474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               170
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               58, 88
               

               Conread position:
               1-251
               

               Cow position:
               chr14:8754666-8754410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               199
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               58, 42
               

               Conread position:
               1-252
               

               Cow position:
               chr14:21964458-21964199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 32
               

               Conread position:
               1-255
               

               Cow position:
               chr14:33828486-33828238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               199
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               58, 24
               

               Conread position:
               1-258
               

               Cow position:
               chr14:36554814-36555081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 22
               

               Conread position:
               1-259
               

               Cow position:
               chr14:18904266-18904536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               204
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               57, 196
               

               Conread position:
               2-265
               

               Cow position:
               chr14:13473848-13473584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               181
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               57, 155
               

               Conread position:
               4-253
               

               Cow position:
               chr14:9875727-9875473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               46, 28
               

               Conread position:
               4-254
               

               Cow position:
               chr14:12483972-12484221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               37, 57
               

               Conread position:
               4-254
               

               Cow position:
               chr14:41180377-41180630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               55, 135
               

               Conread position:
               5-259
               

               Cow position:
               chr14:20009980-20010235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               136, 43
               

               Conread position:
               7-253
               

               Cow position:
               chr14:16306171-16305919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               52, 97
               

               Conread position:
               7-253
               

               Cow position:
               chr14:36437148-36437405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 171
               

               Conread position:
               7-253
               

               Cow position:
               chr14:42154625-42154883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               191
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               49, 180
               

               Conread position:
               7-259
               

               Cow position:
               chr14:19222216-19221955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 97
               

               Conread position:
               7-259
               

               Cow position:
               chr14:19863111-19863359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 32
               

               Conread position:
               7-260
               

               Cow position:
               chr14:12244050-12244309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               127, 52
               

               Conread position:
               7-260
               

               Cow position:
               chr14:28378697-28378433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 18
               

               Conread position:
               7-260
               

               Cow position:
               chr14:41756594-41756332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 67
               

               Conread position:
               7-289
               

               Cow position:
               chr14:17013844-17013541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               221
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               9-259
               

               Cow position:
               chr14:45605423-45605165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               195
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               50, 64
               

               Conread position:
               11-259
               

               Cow position:
               chr14:28988023-28987769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               53, 182
               

               Conread position:
               14-253
               

               Cow position:
               chr14:9020355-9020107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               178
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               45, 70
               

               Conread position:
               31-266
               

               Cow position:
               chr14:13427126-13426913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               32-259
               

               Cow position:
               chr14:16834641-16834399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               33-260
               

               Cow position:
               chr14:44253204-44252983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               27, 114
               

               Conread position:
               35-255
               

               Cow position:
               chr14:39433956-39434180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               170
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               28, 21
               

               Conread position:
               36-266
               

               Cow position:
               chr14:15518072-15518313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               176
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               23, 52
               

               Conread position:
               41-259
               

               Cow position:
               chr14:12488400-12488625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               162
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               18, 162
               

               Conread position:
               43-258
               

               Cow position:
               chr14:19624390-19624160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               16, 154
               

               Conread position:
               45-248
               

               Cow position:
               chr14:38295978-38296196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               14, 131
               

               Conread position:
               57-248
               

               Cow position:
               chr14:11810287-11810486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               149
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               57, 154
               

               Conread position:
               57-255
               

               Cow position:
               chr14:19975500-19975306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               100, 117
               

               Conread position:
               57-259
               

               Cow position:
               chr14:6541439-6541650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               105, 11
               

               Conread position:
               57-259
               

               Cow position:
               chr14:24786215-24786015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               158
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               90, 11
               

               Conread position:
               57-259
               

               Cow position:
               chr14:47672600-47672813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               84, 50
               

               Conread position:
               59-273
               

               Cow position:
               chr14:34355421-34355633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               165
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               78, 50
               

               Conread position:
               60-258
               

               Cow position:
               chr14:24981734-24981529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               82, 61
               

               Conread position:
               60-259
               

               Cow position:
               chr14:39422307-39422518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               17, 55
               

               Conread position:
               61-259
               

               Cow position:
               chr14:17841008-17841215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               155
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               61, 122
               

               Conread position:
               71-259
               

               Cow position:
               chr14:8786280-8786478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               148
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               44, 110
               

               Conread position:
               75-255
               

               Cow position:
               chr14:50504084-50504274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               135
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               93-259
               

               Cow position:
               chr14:33643544-33643709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               65, 52
               

               Conread position:
               110-260
               

               Cow position:
               chr14:37435066-37435225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               29, 109
               

               Conread position:
               135-254
               

               Cow position:
               chr14:5573140-5573022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               97
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               68, 78
               

               Conread position:
               1-255
               

               Cow position:
               chr15:53164407-53164147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               135, 182
               

               Conread position:
               1-259
               

               Cow position:
               chr15:47990374-47990645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               58, 195
               

               Conread position:
               4-253
               

               Cow position:
               chr15:22168448-22168184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               30, 194
               

               Conread position:
               4-265
               

               Cow position:
               chr15:36621804-36621526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               5-259
               

               Cow position:
               chr15:28126665-28126926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               54, 150
               

               Conread position:
               7-175
               

               Cow position:
               chr15:26078988-26079160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               52, 114
               

               Conread position:
               7-244
               

               Cow position:
               chr15:43030640-43030892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               188
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               52, 91
               

               Conread position:
               7-255
               

               Cow position:
               chr15:5234623-5234877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 186
               

               Conread position:
               7-255
               

               Cow position:
               chr15:24616945-24616696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               151, 50
               

               Conread position:
               7-255
               

               Cow position:
               chr15:38806117-38806379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               134, 52
               

               Conread position:
               7-255
               

               Cow position:
               chr15:52482447-52482702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               32, 177
               

               Conread position:
               7-258
               

               Cow position:
               chr15:51632663-51632916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               189
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               52, 135
               

               Conread position:
               7-259
               

               Cow position:
               chr15:5536131-5535877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               91, 61
               

               Conread position:
               7-259
               

               Cow position:
               chr15:43626840-43626588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               50, 21
               

               Conread position:
               7-266
               

               Cow position:
               chr15:1329724-1329989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               198
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               54, 26
               

               Conread position:
               7-266
               

               Cow position:
               chr15:53680388-53680650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               52, 36
               

               Conread position:
               7-289
               

               Cow position:
               chr15:33662876-33662583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               212
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               52, 216
               

               Conread position:
               8-262
               

               Cow position:
               chr15:7827655-7827920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               197
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               18, 185
               

               Conread position:
               9-255
               

               Cow position:
               chr15:22938956-22939198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               192
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               35, 51
               

               Conread position:
               9-266
               

               Cow position:
               chr15:20370090-20370344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 16
               

               Conread position:
               10-260
               

               Cow position:
               chr15:6331682-6331917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               187
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               49, 21
               

               Conread position:
               11-237
               

               Cow position:
               chr15:22751826-22751593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               48, 10
               

               Conread position:
               13-255
               

               Cow position:
               chr15:9871035-9871289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               8, 20
               

               Conread position:
               17-247
               

               Cow position:
               chr15:32204531-32204767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               41, 162
               

               Conread position:
               19-258
               

               Cow position:
               chr15:24941016-24941254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               40, 109
               

               Conread position:
               20-253
               

               Cow position:
               chr15:20725248-20725491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               182
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               32, 57
               

               Conread position:
               27-259
               

               Cow position:
               chr15:38846459-38846224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               179
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               5, 129
               

               Conread position:
               31-266
               

               Cow position:
               chr15:14856126-14856353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               127, 26
               

               Conread position:
               32-255
               

               Cow position:
               chr15:40009293-40009526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               27, 159
               

               Conread position:
               32-259
               

               Cow position:
               chr15:1298093-1297859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               27, 39
               

               Conread position:
               33-251
               

               Cow position:
               chr15:38883513-38883280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               13, 163
               

               Conread position:
               33-258
               

               Cow position:
               chr15:23767909-23768137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               183
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               26, 158
               

               Conread position:
               33-259
               

               Cow position:
               chr15:4535263-4535031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 154
               

               Conread position:
               33-266
               

               Cow position:
               chr15:12316282-12316040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               10, 159
               

               Conread position:
               33-266
               

               Cow position:
               chr15:30820479-30820723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               174
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               25, 218
               

               Conread position:
               40-244
               

               Cow position:
               chr15:11658216-11658433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               19, 147
               

               Conread position:
               40-255
               

               Cow position:
               chr15:31857938-31857713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               101, 151
               

               Conread position:
               40-264
               

               Cow position:
               chr15:6462153-6462382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               19, 124
               

               Conread position:
               41-211
               

               Cow position:
               chr15:12063678-12063496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               136
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               49-259
               

               Cow position:
               chr15:47822136-47821930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               109, 32
               

               Conread position:
               50-252
               

               Cow position:
               chr15:10245673-10245877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               156
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               91, 21
               

               Conread position:
               50-255
               

               Cow position:
               chr15:39621674-39621465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               102, 75
               

               Conread position:
               57-253
               

               Cow position:
               chr15:21894111-21893908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               84, 150
               

               Conread position:
               57-255
               

               Cow position:
               chr15:5633001-5632807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               101, 114
               

               Conread position:
               58-255
               

               Cow position:
               chr15:36787636-36787449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               59-255
               

               Cow position:
               chr15:38394747-38394543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               154
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               83, 199
               

               Conread position:
               60-265
               

               Cow position:
               chr15:26903520-26903309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               72, 143
               

               Conread position:
               61-265
               

               Cow position:
               chr15:50322920-50322710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               80, 126
               

               Conread position:
               72-259
               

               Cow position:
               chr15:10846036-10845840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               87-255
               

               Cow position:
               chr15:11646190-11646363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               52, 18
               

               Conread position:
               87-261
               

               Cow position:
               chr15:37777650-37777473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               71, 7
               

               Conread position:
               89-255
               

               Cow position:
               chr15:1804031-1804211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               133
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               93-264
               

               Cow position:
               chr15:34144862-34145040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               41, 95
               

               Conread position:
               1-218
               

               Cow position:
               chr16:42073259-42073039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               58, 162
               

               Conread position:
               1-221
               

               Cow position:
               chr16:11425439-11425207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               58, 210
               

               Conread position:
               1-253
               

               Cow position:
               chr16:28833543-28833799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               189
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               58, 187
               

               Conread position:
               1-254
               

               Cow position:
               chr16:40561927-40562193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               58, 187
               

               Conread position:
               1-258
               

               Cow position:
               chr16:13791206-13791483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               208
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               32, 193
               

               Conread position:
               1-259
               

               Cow position:
               chr16:53554011-53553748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               205
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               58, 24
               

               Conread position:
               1-261
               

               Cow position:
               chr16:39646261-39646515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               203
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               58, 70
               

               Conread position:
               1-263
               

               Cow position:
               chr16:42253869-42253593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 67
               

               Conread position:
               1-265
               

               Cow position:
               chr16:7665328-7665610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               32, 199
               

               Conread position:
               1-265
               

               Cow position:
               chr16:33226831-33226566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               194
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               58, 176
               
4-251UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr16:52855312-52855063 (view  custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               74, 64
               
4-254UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr16:51400044-51399782 (view  custom track)

               
               
               
Alignm length: 267

               
               
               
Alignm identity: 200

               
               
               
Alignm E-value: 9.99967e-42

               
               
               
Alignm gaps (pig, cow): 41, 188
4-259UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr16:13307158-13306899 (view  custom track)

               
               
               
Alignm length: 271

               
               
               
Alignm identity: 196

               
               
               
Alignm E-value: 4e-32

               
               
               
Alignm gaps (pig, cow): 55, 19

               
               
               Conread position:4-259
               
               
               Cow position:chr16:18141622-18141360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):55, 20

               
               
               Conread position:4-266
               
               
               Cow position:chr16:7541995-7542262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):60, 148

               
               
               Conread position:4-273
               
               
               Cow position:chr16:25965213-25965485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 21

               
               
               Conread position:5-258
               
               
               Cow position:chr16:33299098-33299362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):54, 28

               
               
               Conread position:5-258
               
               
               Cow position:chr16:51113171-51112909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):57, 186

               
               
               Conread position:7-221
               
               
               Cow position:chr16:39616451-39616673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:177
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):52, 64

               
               
               Conread position:7-247
               
               
               Cow position:chr16:56150020-56150257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:190
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):52, 93

               
               
               Conread position:7-255
               
               
               Cow position:chr16:4399431-4399701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):53, 18

               
               
               Conread position:7-258
               
               
               Cow position:chr16:5725187-5725431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):151, 28

               
               
               Conread position:7-259
               
               
               Cow position:chr16:15408165-15407918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):51, 141

               
               
               Conread position:7-259
               
               
               Cow position:chr16:31159864-31159603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:202
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):136, 36

               
               
               Conread position:7-259
               
               
               Cow position:chr16:50189881-50189621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):134, 37

               
               
               Conread position:7-264
               
               
               Cow position:chr16:53627713-53627454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):52, 17

               
               
               Conread position:7-265
               
               
               Cow position:chr16:4910821-4910552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 23

               
               
               Conread position:8-219
               
               
               Cow position:chr16:52789770-52789986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):50, 189

               
               
               Conread position:8-253
               
               
               Cow position:chr16:28922497-28922747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):51, 63

               
               
               Conread position:9-247
               
               
               Cow position:chr16:23990777-23990526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):50, 14

               
               
               Conread position:11-253
               
               
               Cow position:chr16:55042842-55042594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):87, 32

               
               
               Conread position:11-255
               
               
               Cow position:chr16:13698219-13698477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 188

               
               
               Conread position:11-258
               
               
               Cow position:chr16:16402617-16402353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):23, 202

               
               
               Conread position:11-261
               
               
               Cow position:chr16:2223695-2223431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):48, 23

               
               
               Conread position:12-258
               
               
               Cow position:chr16:30939449-30939702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):47, 13

               
               
               Conread position:12-260
               
               
               Cow position:chr16:7456754-7456488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):47, 177

               
               
               Conread position:16-259
               
               
               Cow position:chr16:3246476-3246238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):43, 57

               
               
               Conread position:23-264
               
               
               Cow position:chr16:37379990-37380241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):33, 150

               
               
               Conread position:24-259
               
               
               Cow position:chr16:30209487-30209724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):38, 98

               
               
               Conread position:26-255
               
               
               Cow position:chr16:25287964-25287723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:27-236
               
               
               Cow position:chr16:20476259-20476483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:29-259
               
               
               Cow position:chr16:11008079-11008312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):114, 9

               
               
               Conread position:31-259
               
               
               Cow position:chr16:24672628-24672388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):28, 40

               
               
               Conread position:32-253
               
               
               Cow position:chr16:44744400-44744171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):27, 86

               
               
               Conread position:32-255
               
               
               Cow position:chr16:14758471-14758698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):105, 48

               
               
               Conread position:33-248
               
               
               Cow position:chr16:23025079-23025303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):74, 24

               
               
               Conread position:33-260
               
               
               Cow position:chr16:53613032-53613273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):26, 38

               
               
               Conread position:33-266
               
               
               Cow position:chr16:18205704-18205936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):26, 115

               
               
               Conread position:34-274
               
               
               Cow position:chr16:37669994-37669755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):24, 45

               
               
               Conread position:35-254
               
               
               Cow position:chr16:13969642-13969409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):11, 229

               
               
               Conread position:35-258
               
               
               Cow position:chr16:17745569-17745801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):23, 146

               
               
               Conread position:41-260
               
               
               Cow position:chr16:20025185-20025416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):18, 82

               
               
               Conread position:50-215
               
               
               Cow position:chr16:9728957-9729131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:50-252
               
               
               Cow position:chr16:38905473-38905268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):98, 137

               
               
               Conread position:50-255
               
               
               Cow position:chr16:42633995-42633786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):82, 100

               
               
               Conread position:50-265
               
               
               Cow position:chr16:47620133-47620357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):96, 138

               
               
               Conread position:50-265
               
               
               Cow position:chr16:56522719-56522498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):88, 18

               
               
               Conread position:56-255
               
               
               Cow position:chr16:53048310-53048519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):85, 152

               
               
               Conread position:57-260
               
               
               Cow position:chr16:7152414-7152202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):12, 134

               
               
               Conread position:57-261
               
               
               Cow position:chr16:23810682-23810883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):65, 73

               
               
               Conread position:59-258
               
               
               Cow position:chr16:51246725-51246915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):99, 60

               
               
               Conread position:61-255
               
               
               Cow position:chr16:37452850-37452651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):82, 33

               
               
               Conread position:61-260
               
               
               Cow position:chr16:29037680-29037881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):71, 16

               
               
               Conread position:80-266
               
               
               Cow position:chr16:28692927-28692746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):80, 29

               
               
               Conread position:88-253
               
               
               Cow position:chr16:9615444-9615274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):49, 79

               
               
               Conread position:91-255
               
               
               Cow position:chr16:10462723-10462558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):52, 100

               
               
               Conread position:93-258
               
               
               Cow position:chr16:17982348-17982174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 16

               
               
               Conread position:121-273
               
               
               Cow position:chr16:34153745-34153585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:135-255
               
               
               Cow position:chr16:3821381-3821503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):21, 117

               
               
               Conread position:1-255
               
               
               Cow position:chr17:26182964-26183228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:4-259
               
               
               Cow position:chr17:9565054-9565317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 189

               
               
               Conread position:4-260
               
               
               Cow position:chr17:18720699-18720439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:4-265
               
               
               Cow position:chr17:8079062-8079330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):54, 92

               
               
               Conread position:7-174
               
               
               Cow position:chr17:17059188-17059358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):52, 64

               
               
               Conread position:7-253
               
               
               Cow position:chr17:25189031-25189291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):54, 18

               
               
               Conread position:7-255
               
               
               Cow position:chr17:1653940-1653686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):51, 74

               
               
               Conread position:7-255
               
               
               Cow position:chr17:20889123-20889380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):57, 203

               
               
               Conread position:7-255
               
               
               Cow position:chr17:21959931-21959681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):52, 64

               
               
               Conread position:7-255
               
               
               Cow position:chr17:26230687-26230956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:7-258
               
               
               Cow position:chr17:9853734-9853995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):53, 188

               
               
               Conread position:7-258
               
               
               Cow position:chr17:24549918-24550185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:7-259
               
               
               Cow position:chr17:5041930-5041672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):25, 81

               
               
               Conread position:7-259
               
               
               Cow position:chr17:11216132-11215882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):51, 18

               
               
               Conread position:7-260
               
               
               Cow position:chr17:20233975-20234239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):54, 186

               
               
               Conread position:7-260
               
               
               Cow position:chr17:33271925-33271672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):52, 16

               
               
               Conread position:7-266
               
               
               Cow position:chr17:14033899-14033624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):52, 189

               
               
               Conread position:7-273
               
               
               Cow position:chr17:4612328-4612056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):35, 18

               
               
               Conread position:7-273
               
               
               Cow position:chr17:20993292-20993016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 185

               
               
               Conread position:10-255
               
               
               Cow position:chr17:25740701-25740958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):50, 194

               
               
               Conread position:11-255
               
               
               Cow position:chr17:9117395-9117652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):48, 172

               
               
               Conread position:13-253
               
               
               Cow position:chr17:16371004-16371260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):30, 60

               
               
               Conread position:14-255
               
               
               Cow position:chr17:11102039-11101795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:188
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):45, 141

               
               
               Conread position:23-247
               
               
               Cow position:chr17:15300106-15299877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):37, 165

               
               
               Conread position:24-259
               
               
               Cow position:chr17:14848757-14848534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):35, 14

               
               
               Conread position:24-260
               
               
               Cow position:chr17:30665039-30665282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 29

               
               
               Conread position:27-259
               
               
               Cow position:chr17:27047931-27048167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):33, 78

               
               
               Conread position:32-245
               
               
               Cow position:chr17:34316935-34316713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):27, 41

               
               
               Conread position:32-259
               
               
               Cow position:chr17:7132682-7132441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):27, 163

               
               
               Conread position:32-266
               
               
               Cow position:chr17:35126487-35126724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):27, 100

               
               
               Conread position:32-273
               
               
               Cow position:chr17:17410071-17410314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):26, 65

               
               
               Conread position:33-252
               
               
               Cow position:chr17:9778025-9778250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 145

               
               
               Conread position:33-255
               
               
               Cow position:chr17:21313027-21312805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):115, 35

               
               
               Conread position:39-255
               
               
               Cow position:chr17:5246680-5246897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):100, 18

               
               
               Conread position:41-258
               
               
               Cow position:chr17:21739102-21738867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:43-258
               
               
               Cow position:chr17:25097247-25097471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):15, 28

               
               
               Conread position:50-259
               
               
               Cow position:chr17:1035810-1035588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:50-259
               
               
               Cow position:chr17:20912692-20912894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):108, 18

               
               
               Conread position:58-247
               
               
               Cow position:chr17:32279105-32278908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):95, 88

               
               
               Conread position:59-252
               
               
               Cow position:chr17:5514562-5514762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):82, 36

               
               
               Conread position:60-258
               
               
               Cow position:chr17:35311225-35311435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):78, 152

               
               
               Conread position:61-175
               
               
               Cow position:chr17:20072270-20072155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:61-255
               
               
               Cow position:chr17:4436426-4436227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):76, 118

               
               
               Conread position:81-265
               
               
               Cow position:chr17:10459111-10458923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):45, 107

               
               
               Conread position:89-255
               
               
               Cow position:chr17:38363141-38362981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):111, 57

               
               
               Conread position:106-246
               
               
               Cow position:chr17:24559149-24559290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 78

               
               
               Conread position:141-260
               
               
               Cow position:chr17:9936146-9936029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 41

               
               
               Conread position:1-225
               
               
               Cow position:chr18:22790401-22790173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):58, 24

               
               
               Conread position:1-247
               
               
               Cow position:chr18:22121211-22120957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):58, 42

               
               
               Conread position:1-258
               
               
               Cow position:chr18:3158931-3158667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):58, 32

               
               
               Conread position:1-258
               
               
               Cow position:chr18:35076056-35076320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):58, 73

               
               
               Conread position:4-247
               
               
               Cow position:chr18:33756558-33756800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):144, 21

               
               
               Conread position:4-250
               
               
               Cow position:chr18:52693146-52693385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):56, 99

               
               
               Conread position:4-258
               
               
               Cow position:chr18:19159292-19159037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):60, 116

               
               
               Conread position:4-258
               
               
               Cow position:chr18:47314626-47314354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):35, 186

               
               
               Conread position:4-260
               
               
               Cow position:chr18:35636675-35636411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):55, 21

               
               
               Conread position:7-212
               
               
               Cow position:chr18:36750175-36750366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):151, 28

               
               
               Conread position:7-234
               
               
               Cow position:chr18:15881179-15880947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):51, 18

               
               
               Conread position:7-253
               
               
               Cow position:chr18:39662452-39662710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):22, 111

               
               
               Conread position:7-255
               
               
               Cow position:chr18:8105268-8105013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):52, 91

               
               
               Conread position:7-258
               
               
               Cow position:chr18:36445104-36445374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):13, 194

               
               
               Conread position:7-259
               
               
               Cow position:chr18:2774912-2774665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):153, 61

               
               
               Conread position:7-259
               
               
               Cow position:chr18:45104771-45104509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):52, 66

               
               
               Conread position:7-260
               
               
               Cow position:chr18:25003202-25002943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):52, 195

               
               
               Conread position:7-265
               
               
               Cow position:chr18:26937402-26937664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):33, 119

               
               
               Conread position:7-265
               
               
               Cow position:chr18:52635406-52635137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 80

               
               
               Conread position:8-189
               
               
               Cow position:chr18:13212927-13213113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:9-254
               
               
               Cow position:chr18:40758893-40759137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):50, 62

               
               
               Conread position:10-259
               
               
               Cow position:chr18:21195661-21195409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):49, 181

               
               
               Conread position:11-260
               
               
               Cow position:chr18:20864666-20864925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):48, 28

               
               
               Conread position:12-255
               
               
               Cow position:chr18:26286595-26286842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):46, 9

               
               
               Conread position:18-253
               
               
               Cow position:chr18:12113681-12113448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):38, 84

               
               
               Conread position:20-266
               
               
               Cow position:chr18:35827726-35827466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):39, 9

               
               
               Conread position:31-266
               
               
               Cow position:chr18:39875561-39875316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):16, 78

               
               
               Conread position:33-247
               
               
               Cow position:chr18:20271319-20271096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):25, 149

               
               
               Conread position:33-250
               
               
               Cow position:chr18:4649034-4648816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):26, 103

               
               
               Conread position:33-273
               
               
               Cow position:chr18:33157522-33157766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):26, 156

               
               
               Conread position:35-259
               
               
               Cow position:chr18:13359765-13360000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):24, 62

               
               
               Conread position:36-258
               
               
               Cow position:chr18:48290734-48290507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):23, 158

               
               
               Conread position:37-259
               
               
               Cow position:chr18:6610153-6609922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):22, 155

               
               
               Conread position:39-255
               
               
               Cow position:chr18:42747303-42747524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):23, 67

               
               
               Conread position:40-266
               
               
               Cow position:chr18:47517500-47517274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):21, 149

               
               
               Conread position:41-260
               
               
               Cow position:chr18:31725175-31724941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):100, 27

               
               
               Conread position:42-175
               
               
               Cow position:chr18:18445399-18445263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):17, 36

               
               
               Conread position:42-255
               
               
               Cow position:chr18:31586654-31586436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):17, 39

               
               
               Conread position:42-266
               
               
               Cow position:chr18:54658011-54658253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 68

               
               
               Conread position:45-265
               
               
               Cow position:chr18:36097914-36098145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:45-266
               
               
               Cow position:chr18:19831010-19831251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):14, 233

               
               
               Conread position:61-259
               
               
               Cow position:chr18:46437020-46436828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):87, 43

               
               
               Conread position:62-254
               
               
               Cow position:chr18:37382365-37382162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):72, 130

               
               
               Conread position:62-255
               
               
               Cow position:chr18:21768360-21768563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):79, 100

               
               
               Conread position:68-259
               
               
               Cow position:chr18:35582363-35582165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):78, 120

               
               
               Conread position:109-273
               
               
               Cow position:chr18:18815893-18815720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:1-253
               
               
               Cow position:chr19:1355303-1355553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 147

               
               
               Conread position:1-253
               
               
               Cow position:chr19:18843271-18843015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):58, 186

               
               
               Conread position:1-255
               
               
               Cow position:chr19:630635-630885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):37, 105

               
               
               Conread position:1-255
               
               
               Cow position:chr19:1901311-1901044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:1-255
               
               
               Cow position:chr19:2734142-2734404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):58, 24

               
               
               Conread position:1-258
               
               
               Cow position:chr19:12601502-12601768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):58, 122

               
               
               Conread position:1-265
               
               
               Cow position:chr19:10171680-10171967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:215
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):42, 191

               
               
               Conread position:1-265
               
               
               Cow position:chr19:53657591-53657854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:203
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):55, 77

               
               
               Conread position:3-214
               
               
               Cow position:chr19:27104442-27104660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:172
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):136, 65

               
               
               Conread position:4-255
               
               
               Cow position:chr19:6417293-6417548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):55, 109

               
               
               Conread position:4-255
               
               
               Cow position:chr19:9542204-9541940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):55, 191

               
               
               Conread position:4-255
               
               
               Cow position:chr19:28014173-28014432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):55, 89

               
               
               Conread position:4-265
               
               
               Cow position:chr19:31594992-31595263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 216

               
               
               Conread position:4-266
               
               
               Cow position:chr19:2138412-2138140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):55, 188

               
               
               Conread position:5-259
               
               
               Cow position:chr19:33932449-33932191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 120

               
               
               Conread position:7-176
               
               
               Cow position:chr19:13755587-13755758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):52, 153

               
               
               Conread position:7-193
               
               
               Cow position:chr19:21115003-21115198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:158
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):52, 176

               
               
               Conread position:7-221
               
               
               Cow position:chr19:19499856-19499634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):134, 89

               
               
               Conread position:7-253
               
               
               Cow position:chr19:6515957-6516218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:7-255
               
               
               Cow position:chr19:17274020-17273776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):52, 19

               
               
               Conread position:7-255
               
               
               Cow position:chr19:32457338-32457597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 167

               
               
               Conread position:7-255
               
               
               Cow position:chr19:39623085-39622849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):51, 15

               
               
               Conread position:7-258
               
               
               Cow position:chr19:21092476-21092720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):52, 123

               
               
               Conread position:7-258
               
               
               Cow position:chr19:46181116-46180860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:202
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):52, 18

               
               
               Conread position:7-259
               
               
               Cow position:chr19:2577272-2577521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):51, 98

               
               
               Conread position:7-259
               
               
               Cow position:chr19:6688309-6688040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:203
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:7-259
               
               
               Cow position:chr19:47727872-47727619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):132, 126

               
               
               Conread position:7-260
               
               
               Cow position:chr19:16694349-16694084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):52, 28

               
               
               Conread position:7-260
               
               
               Cow position:chr19:48409212-48409469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 178

               
               
               Conread position:7-266
               
               
               Cow position:chr19:15437805-15438064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 202

               
               
               Conread position:7-274
               
               
               Cow position:chr19:730034-729772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):52, 185

               
               
               Conread position:7-274
               
               
               Cow position:chr19:38392493-38392775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):52, 176

               
               
               Conread position:7-275
               
               
               Cow position:chr19:14592750-14593027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):52, 18

               
               
               Conread position:9-255
               
               
               Cow position:chr19:13129592-13129826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):149, 23

               
               
               Conread position:11-247
               
               
               Cow position:chr19:54942675-54942919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 115

               
               
               Conread position:15-289
               
               
               Cow position:chr19:21380221-21379932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):44, 98

               
               
               Conread position:23-266
               
               
               Cow position:chr19:44397212-44397468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):36, 189

               
               
               Conread position:27-259
               
               
               Cow position:chr19:10232686-10232455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):32, 102

               
               
               Conread position:32-244
               
               
               Cow position:chr19:19561227-19561454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):27, 165

               
               
               Conread position:32-255
               
               
               Cow position:chr19:51185148-51185378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):18, 156

               
               
               Conread position:32-259
               
               
               Cow position:chr19:39360861-39361099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):27, 75

               
               
               Conread position:33-247
               
               
               Cow position:chr19:9704110-9703891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 168

               
               
               Conread position:33-255
               
               
               Cow position:chr19:990689-990468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):11, 114

               
               
               Conread position:33-259
               
               
               Cow position:chr19:6079627-6079402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):106, 25

               
               
               Conread position:33-259
               
               
               Cow position:chr19:36059654-36059886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):25, 153

               
               
               Conread position:35-255
               
               
               Cow position:chr19:4537688-4537465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):24, 36

               
               
               Conread position:35-268
               
               
               Cow position:chr19:35142289-35142053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):23, 77

               
               
               Conread position:38-255
               
               
               Cow position:chr19:15887595-15887371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):21, 47

               
               
               Conread position:38-266
               
               
               Cow position:chr19:21335885-21335643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):103, 30

               
               
               Conread position:40-253
               
               
               Cow position:chr19:11163352-11163131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):18, 48

               
               
               Conread position:45-251
               
               
               Cow position:chr19:7637503-7637289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):14, 105

               
               
               Conread position:48-253
               
               
               Cow position:chr19:12748025-12747825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):73, 59

               
               
               Conread position:57-258
               
               
               Cow position:chr19:37562243-37562050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):90, 53

               
               
               Conread position:57-259
               
               
               Cow position:chr19:1898482-1898278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):80, 21

               
               
               Conread position:61-255
               
               
               Cow position:chr19:11191870-11191663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):15, 137

               
               
               Conread position:87-258
               
               
               Cow position:chr19:8864528-8864704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):61, 101

               
               
               Conread position:88-255
               
               
               Cow position:chr19:24137038-24137214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):53, 103

               
               
               Conread position:96-253
               
               
               Cow position:chr19:43291836-43292003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:96-264
               
               
               Cow position:chr19:11424521-11424352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):41, 90

               
               
               Conread position:109-259
               
               
               Cow position:chr19:1552036-1552189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 78

               
               
               Conread position:110-254
               
               
               Cow position:chr19:22450130-22449978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:132-253
               
               
               Cow position:chr19:7404549-7404427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):26, 14

               
               
               Conread position:1-218
               
               
               Cow position:chr2:28711275-28711063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):120, 47

               
               
               Conread position:1-221
               
               
               Cow position:chr2:7193907-7194133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:182
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:1-255
               
               
               Cow position:chr2:38659077-38658817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):58, 23

               
               
               Conread position:1-258
               
               
               Cow position:chr2:24270926-24271201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):26, 73

               
               
               Conread position:1-265
               
               
               Cow position:chr2:36007871-36007612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):120, 24

               
               
               Conread position:1-265
               
               
               Cow position:chr2:41526017-41525749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):24, 60

               
               
               Conread position:1-266
               
               
               Cow position:chr2:33262914-33262637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:214
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):58, 101

               
               
               Conread position:1-270
               
               
               Cow position:chr2:56102764-56102485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 56

               
               
               Conread position:3-254
               
               
               Cow position:chr2:70908611-70908357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):56, 128

               
               
               Conread position:4-255
               
               
               Cow position:chr2:13543733-13543989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 110

               
               
               Conread position:4-255
               
               
               Cow position:chr2:24007141-24007386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):54, 88

               
               
               Conread position:4-255
               
               
               Cow position:chr2:28303027-28303292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:4-255
               
               
               Cow position:chr2:42226565-42226304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):52, 23

               
               
               Conread position:4-258
               
               
               Cow position:chr2:42255136-42255404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 193

               
               
               Conread position:4-259
               
               
               Cow position:chr2:7524431-7524165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 53

               
               
               Conread position:4-259
               
               
               Cow position:chr2:45554020-45554284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:201
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):36, 18

               
               
               Conread position:4-260
               
               
               Cow position:chr2:25282811-25283083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):33, 184

               
               
               Conread position:4-265
               
               
               Cow position:chr2:27076414-27076688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):21, 194

               
               
               Conread position:7-175
               
               
               Cow position:chr2:971553-971723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):52, 37

               
               
               Conread position:7-221
               
               
               Cow position:chr2:44032819-44032609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:7-236
               
               
               Cow position:chr2:63288441-63288208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):51, 64

               
               
               Conread position:7-244
               
               
               Cow position:chr2:60470890-60471138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):33, 160

               
               
               Conread position:7-251
               
               
               Cow position:chr2:14854031-14854276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):51, 64

               
               
               Conread position:7-253
               
               
               Cow position:chr2:55632483-55632741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):51, 174

               
               
               Conread position:7-255
               
               
               Cow position:chr2:39263200-39263456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):132, 61

               
               
               Conread position:7-255
               
               
               Cow position:chr2:69250970-69250705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:7-258
               
               
               Cow position:chr2:28480407-28480147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):102, 61

               
               
               Conread position:7-258
               
               
               Cow position:chr2:50445602-50445867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:7-258
               
               
               Cow position:chr2:52386214-52385949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):26, 188

               
               
               Conread position:7-258
               
               
               Cow position:chr2:81927561-81927822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):33, 186

               
               
               Conread position:7-259
               
               
               Cow position:chr2:1303656-1303918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):36, 20

               
               
               Conread position:7-259
               
               
               Cow position:chr2:39855495-39855758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):29, 66

               
               
               Conread position:7-259
               
               
               Cow position:chr2:70580003-70579737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):52, 36

               
               
               Conread position:7-260
               
               
               Cow position:chr2:39662406-39662671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:205
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):28, 65

               
               
               Conread position:7-260
               
               
               Cow position:chr2:69237981-69238247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:7-265
               
               
               Cow position:chr2:50277730-50277998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):58, 188

               
               
               Conread position:7-266
               
               
               Cow position:chr2:21407636-21407898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:199
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):132, 31

               
               
               Conread position:7-289
               
               
               Cow position:chr2:14825992-14826297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):45, 191

               
               
               Conread position:8-196
               
               
               Cow position:chr2:38864349-38864170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):129, 52

               
               
               Conread position:8-260
               
               
               Cow position:chr2:23271220-23270959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):25, 54

               
               
               Conread position:9-247
               
               
               Cow position:chr2:1365184-1364928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):32, 192

               
               
               Conread position:9-255
               
               
               Cow position:chr2:43596460-43596208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):50, 62

               
               
               Conread position:9-255
               
               
               Cow position:chr2:54789984-54790248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):18, 190

               
               
               Conread position:9-258
               
               
               Cow position:chr2:38273254-38273513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:9-283
               
               
               Cow position:chr2:42599635-42599925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):23, 190

               
               
               Conread position:10-228
               
               
               Cow position:chr2:60956093-60956311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):54, 26

               
               
               Conread position:11-259
               
               
               Cow position:chr2:56821686-56821425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):48, 138

               
               
               Conread position:12-259
               
               
               Cow position:chr2:45439168-45439410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):47, 130

               
               
               Conread position:12-259
               
               
               Cow position:chr2:46344395-46344659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):30, 187

               
               
               Conread position:13-259
               
               
               Cow position:chr2:21171112-21171351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):46, 135

               
               
               Conread position:20-259
               
               
               Cow position:chr2:53430452-53430697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:23-175
               
               
               Cow position:chr2:44007019-44007184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 48

               
               
               Conread position:32-253
               
               
               Cow position:chr2:64322988-64323207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):127, 27

               
               
               Conread position:32-255
               
               
               Cow position:chr2:27173100-27173334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):27, 150

               
               
               Conread position:32-259
               
               
               Cow position:chr2:32403229-32403004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):27, 11

               
               
               Conread position:32-266
               
               
               Cow position:chr2:85246599-85246352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):28, 162

               
               
               Conread position:33-253
               
               
               Cow position:chr2:13354409-13354640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):26, 158

               
               
               Conread position:33-253
               
               
               Cow position:chr2:28653796-28653566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):26, 15

               
               
               Conread position:33-255
               
               
               Cow position:chr2:46189356-46189134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):32, 138

               
               
               Conread position:33-259
               
               
               Cow position:chr2:45881033-45880809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):26, 105

               
               
               Conread position:33-265
               
               
               Cow position:chr2:45469738-45469981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):25, 163

               
               
               Conread position:35-228
               
               
               Cow position:chr2:24469921-24469724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):21, 153

               
               
               Conread position:35-259
               
               
               Cow position:chr2:51594501-51594733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):24, 154

               
               
               Conread position:35-259
               
               
               Cow position:chr2:73069453-73069694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):24, 172

               
               
               Conread position:37-265
               
               
               Cow position:chr2:62978927-62978697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):22, 150

               
               
               Conread position:38-251
               
               
               Cow position:chr2:32406425-32406642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):101, 80

               
               
               Conread position:38-255
               
               
               Cow position:chr2:50580108-50580339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):21, 33

               
               
               Conread position:41-273
               
               
               Cow position:chr2:18621148-18621391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 154

               
               
               Conread position:43-266
               
               
               Cow position:chr2:80797419-80797645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):16, 145

               
               
               Conread position:45-253
               
               
               Cow position:chr2:47990186-47990399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):17, 132

               
               
               Conread position:48-260
               
               
               Cow position:chr2:36105023-36105237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:50-258
               
               
               Cow position:chr2:76183052-76182846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):108, 21

               
               
               Conread position:50-259
               
               
               Cow position:chr2:46194549-46194765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):87, 128

               
               
               Conread position:53-260
               
               
               Cow position:chr2:69579924-69579711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):82, 56

               
               
               Conread position:53-266
               
               
               Cow position:chr2:6697736-6697519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):93, 124

               
               
               Conread position:57-255
               
               
               Cow position:chr2:62644360-62644554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):9, 48

               
               
               Conread position:57-258
               
               
               Cow position:chr2:17114975-17114763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):82, 138

               
               
               Conread position:58-254
               
               
               Cow position:chr2:46204270-46204480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):81, 167

               
               
               Conread position:58-260
               
               
               Cow position:chr2:38272392-38272195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):142, 50

               
               
               Conread position:59-254
               
               
               Cow position:chr2:15249946-15250143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):86, 126

               
               
               Conread position:61-265
               
               
               Cow position:chr2:13604230-13604443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):49, 43

               
               
               Conread position:61-265
               
               
               Cow position:chr2:73353555-73353768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):85, 129

               
               
               Conread position:62-258
               
               
               Cow position:chr2:80963879-80963678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:163
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):70, 124

               
               
               Conread position:63-258
               
               
               Cow position:chr2:16428634-16428433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):74, 132

               
               
               Conread position:65-260
               
               
               Cow position:chr2:5300356-5300556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):76, 149

               
               
               Conread position:72-255
               
               
               Cow position:chr2:60463040-60462855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):65, 112

               
               
               Conread position:72-255
               
               
               Cow position:chr2:60468419-60468234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):65, 112

               
               
               Conread position:74-274
               
               
               Cow position:chr2:68970511-68970721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):67, 170

               
               
               Conread position:87-265
               
               
               Cow position:chr2:19294392-19294567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):50, 66

               
               
               Conread position:118-259
               
               
               Cow position:chr2:85498970-85498824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):5, 12

               
               
               Conread position:1-258
               
               
               Cow position:chr20:31261477-31261733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 116

               
               
               Conread position:4-253
               
               
               Cow position:chr20:5104687-5104436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):60, 184

               
               
               Conread position:4-255
               
               
               Cow position:chr20:17903906-17904167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):55, 21

               
               
               Conread position:4-259
               
               
               Cow position:chr20:8429495-8429759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):137, 27

               
               
               Conread position:4-266
               
               
               Cow position:chr20:33532057-33532323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):29, 130

               
               
               Conread position:7-178
               
               
               Cow position:chr20:32548718-32548892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:7-254
               
               
               Cow position:chr20:10539071-10539322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):52, 94

               
               
               Conread position:7-255
               
               
               Cow position:chr20:13876958-13876697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):52, 179

               
               
               Conread position:7-255
               
               
               Cow position:chr20:18185329-18185574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 125

               
               
               Conread position:7-255
               
               
               Cow position:chr20:19751061-19751315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):52, 36

               
               
               Conread position:7-255
               
               
               Cow position:chr20:21019315-21019572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):53, 182

               
               
               Conread position:7-260
               
               
               Cow position:chr20:9536887-9537149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):53, 15

               
               
               Conread position:7-265
               
               
               Cow position:chr20:9473864-9473597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 159

               
               
               Conread position:7-265
               
               
               Cow position:chr20:24069565-24069821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 61

               
               
               Conread position:7-266
               
               
               Cow position:chr20:7659459-7659199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):141, 50

               
               
               Conread position:7-273
               
               
               Cow position:chr20:33435412-33435141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 18

               
               
               Conread position:8-258
               
               
               Cow position:chr20:4621590-4621334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 180

               
               
               Conread position:9-259
               
               
               Cow position:chr20:5077948-5078211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):50, 62

               
               
               Conread position:15-265
               
               
               Cow position:chr20:30817289-30817552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):24, 172

               
               
               Conread position:17-254
               
               
               Cow position:chr20:17734013-17733769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):124, 54

               
               
               Conread position:19-233
               
               
               Cow position:chr20:41119683-41119897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):120, 49

               
               
               Conread position:19-255
               
               
               Cow position:chr20:6903091-6903322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 54

               
               
               Conread position:26-247
               
               
               Cow position:chr20:24391756-24391979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):133, 41

               
               
               Conread position:31-258
               
               
               Cow position:chr20:30777950-30778183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):30, 134

               
               
               Conread position:32-259
               
               
               Cow position:chr20:29633216-29632989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):27, 101

               
               
               Conread position:33-255
               
               
               Cow position:chr20:7442348-7442120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):26, 154

               
               
               Conread position:33-255
               
               
               Cow position:chr20:12205936-12205727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):34, 97

               
               
               Conread position:33-259
               
               
               Cow position:chr20:14735453-14735687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):26, 38

               
               
               Conread position:35-265
               
               
               Cow position:chr20:22704066-22704310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):24, 159

               
               
               Conread position:36-246
               
               
               Cow position:chr20:34918063-34918270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):159, 13

               
               
               Conread position:36-252
               
               
               Cow position:chr20:23936635-23936403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):61, 9

               
               
               Conread position:39-249
               
               
               Cow position:chr20:5025520-5025303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:43-253
               
               
               Cow position:chr20:28296076-28296298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):16, 149

               
               
               Conread position:45-260
               
               
               Cow position:chr20:6848410-6848637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):14, 30

               
               
               Conread position:47-255
               
               
               Cow position:chr20:20983797-20984004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):12, 101

               
               
               Conread position:57-219
               
               
               Cow position:chr20:11043694-11043531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):12, 118

               
               
               Conread position:57-265
               
               
               Cow position:chr20:8020698-8020915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 11

               
               
               Conread position:59-255
               
               
               Cow position:chr20:21928710-21928912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):84, 26

               
               
               Conread position:87-258
               
               
               Cow position:chr20:3321305-3321131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):61, 97

               
               
               Conread position:106-261
               
               
               Cow position:chr20:5025091-5024932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:120-259
               
               
               Cow position:chr20:5636355-5636494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 55

               
               
               Conread position:135-252
               
               
               Cow position:chr20:22484747-22484867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:1-235
               
               
               Cow position:chr21:5566756-5567008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):58, 44

               
               
               Conread position:1-255
               
               
               Cow position:chr21:37361709-37361448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):26, 32

               
               
               Conread position:1-258
               
               
               Cow position:chr21:8985314-8985577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 187

               
               
               Conread position:1-258
               
               
               Cow position:chr21:13897958-13898216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):136, 34

               
               
               Conread position:1-259
               
               
               Cow position:chr21:48484675-48484415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 31

               
               
               Conread position:1-260
               
               
               Cow position:chr21:26648239-26647978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):59, 95

               
               
               Conread position:1-266
               
               
               Cow position:chr21:28734147-28733875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 187

               
               
               Conread position:1-272
               
               
               Cow position:chr21:40244199-40244484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):58, 196

               
               
               Conread position:4-258
               
               
               Cow position:chr21:39401368-39401625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):135, 55

               
               
               Conread position:4-259
               
               
               Cow position:chr21:937820-938058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):127, 21

               
               
               Conread position:4-265
               
               
               Cow position:chr21:27743509-27743785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):29, 100

               
               
               Conread position:4-289
               
               
               Cow position:chr21:34658802-34659092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 156

               
               
               Conread position:6-206
               
               
               Cow position:chr21:34254512-34254300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:167
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:7-228
               
               
               Cow position:chr21:2367111-2367335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):52, 179

               
               
               Conread position:7-244
               
               
               Cow position:chr21:33419944-33419706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 106

               
               
               Conread position:7-247
               
               
               Cow position:chr21:7672904-7673140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):52, 64

               
               
               Conread position:7-254
               
               
               Cow position:chr21:36795371-36795627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):28, 184

               
               
               Conread position:7-254
               
               
               Cow position:chr21:41878247-41878498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):52, 100

               
               
               Conread position:7-255
               
               
               Cow position:chr21:15445308-15445045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:7-258
               
               
               Cow position:chr21:42500802-42501070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):36, 192

               
               
               Conread position:7-259
               
               
               Cow position:chr21:5344432-5344688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):134, 52

               
               
               Conread position:7-259
               
               
               Cow position:chr21:33997454-33997197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):31, 169

               
               
               Conread position:7-259
               
               
               Cow position:chr21:34391199-34390943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 68

               
               
               Conread position:7-264
               
               
               Cow position:chr21:43357490-43357222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):25, 83

               
               
               Conread position:7-265
               
               
               Cow position:chr21:36163192-36162924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):52, 255

               
               
               Conread position:7-266
               
               
               Cow position:chr21:10727052-10727316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):52, 66

               
               
               Conread position:7-266
               
               
               Cow position:chr21:23322310-23322039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:8-259
               
               
               Cow position:chr21:5455214-5454957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):28, 70

               
               
               Conread position:10-251
               
               
               Cow position:chr21:33497-33745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:11-258
               
               
               Cow position:chr21:41155637-41155893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):45, 69

               
               
               Conread position:11-266
               
               
               Cow position:chr21:28429225-28429480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):48, 7

               
               
               Conread position:13-259
               
               
               Cow position:chr21:46849346-46849095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 176

               
               
               Conread position:18-255
               
               
               Cow position:chr21:31676284-31676525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):41, 21

               
               
               Conread position:23-259
               
               
               Cow position:chr21:15584616-15584388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):54, 36

               
               
               Conread position:30-265
               
               
               Cow position:chr21:17434527-17434280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 162

               
               
               Conread position:32-180
               
               
               Cow position:chr21:29248050-29247896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):14, 48

               
               
               Conread position:32-268
               
               
               Cow position:chr21:24094948-24094704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):27, 106

               
               
               Conread position:32-272
               
               
               Cow position:chr21:17674440-17674185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):24, 68

               
               
               Conread position:33-266
               
               
               Cow position:chr21:30607288-30607050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):127, 112

               
               
               Conread position:34-265
               
               
               Cow position:chr21:5596943-5597188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):6, 179

               
               
               Conread position:37-265
               
               
               Cow position:chr21:23586677-23586918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):22, 150

               
               
               Conread position:40-253
               
               
               Cow position:chr21:26829437-26829232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):160, 19

               
               
               Conread position:42-252
               
               
               Cow position:chr21:31253341-31253569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):17, 157

               
               
               Conread position:42-263
               
               
               Cow position:chr21:31277627-31277856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):17, 48

               
               
               Conread position:45-259
               
               
               Cow position:chr21:5426755-5426973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):86, 142

               
               
               Conread position:46-266
               
               
               Cow position:chr21:33791558-33791327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:57-252
               
               
               Cow position:chr21:9998896-9998692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):81, 11

               
               
               Conread position:57-259
               
               
               Cow position:chr21:14452054-14452265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):36, 10

               
               
               Conread position:57-259
               
               
               Cow position:chr21:18790732-18790527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):74, 127

               
               
               Conread position:58-265
               
               
               Cow position:chr21:32339912-32339700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):87, 70

               
               
               Conread position:62-259
               
               
               Cow position:chr21:8235716-8235522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):86, 95

               
               
               Conread position:65-255
               
               
               Cow position:chr21:10000912-10001103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:157
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):83, 45

               
               
               Conread position:68-261
               
               
               Cow position:chr21:28244311-28244503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):83, 8

               
               
               Conread position:72-255
               
               
               Cow position:chr21:28617429-28617617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):69, 27

               
               
               Conread position:79-265
               
               
               Cow position:chr21:24642364-24642558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):17, 111

               
               
               Conread position:81-253
               
               
               Cow position:chr21:11456962-11456782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:87-273
               
               
               Cow position:chr21:10005032-10004841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):59, 67

               
               
               Conread position:88-266
               
               
               Cow position:chr21:957521-957711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):5, 98

               
               
               Conread position:95-255
               
               
               Cow position:chr21:12462109-12461942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 93

               
               
               Conread position:1-196
               
               
               Cow position:chr22:11814017-11813818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:161
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):57, 47

               
               
               Conread position:1-253
               
               
               Cow position:chr22:18196206-18196472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 97

               
               
               Conread position:1-255
               
               
               Cow position:chr22:15919937-15919669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):58, 263

               
               
               Conread position:1-255
               
               
               Cow position:chr22:16044731-16044458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):62, 84

               
               
               Conread position:1-255
               
               
               Cow position:chr22:30514953-30515213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:1-255
               
               
               Cow position:chr22:44717418-44717673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):128, 30

               
               
               Conread position:1-258
               
               
               Cow position:chr22:20626540-20626803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 37

               
               
               Conread position:1-259
               
               
               Cow position:chr22:7153580-7153851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):37, 153

               
               
               Conread position:1-260
               
               
               Cow position:chr22:22861213-22860943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):58, 70

               
               
               Conread position:3-255
               
               
               Cow position:chr22:27818700-27818964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-259
               
               
               Cow position:chr22:13840842-13841102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 54

               
               
               Conread position:4-196
               
               
               Cow position:chr22:8329250-8329449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:159
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):58, 187

               
               
               Conread position:4-221
               
               
               Cow position:chr22:2502539-2502763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):55, 67

               
               
               Conread position:4-254
               
               
               Cow position:chr22:34726375-34726634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:4-265
               
               
               Cow position:chr22:13670466-13670201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:7-244
               
               
               Cow position:chr22:39494500-39494247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):52, 243

               
               
               Conread position:7-246
               
               
               Cow position:chr22:6202617-6202868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):52, 190

               
               
               Conread position:7-247
               
               
               Cow position:chr22:16915426-16915180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):52, 191

               
               
               Conread position:7-253
               
               
               Cow position:chr22:41244946-41245204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):29, 86

               
               
               Conread position:7-255
               
               
               Cow position:chr22:11211889-11211637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):131, 50

               
               
               Conread position:7-255
               
               
               Cow position:chr22:24575370-24575111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):52, 87

               
               
               Conread position:7-255
               
               
               Cow position:chr22:26490163-26490422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):39, 186

               
               
               Conread position:7-255
               
               
               Cow position:chr22:30698885-30699138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):52, 43

               
               
               Conread position:7-258
               
               
               Cow position:chr22:877227-877478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):52, 64

               
               
               Conread position:7-258
               
               
               Cow position:chr22:16532770-16533039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):45, 202

               
               
               Conread position:7-258
               
               
               Cow position:chr22:16620883-16621140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 37

               
               
               Conread position:7-258
               
               
               Cow position:chr22:26316183-26316435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 62

               
               
               Conread position:7-258
               
               
               Cow position:chr22:43292198-43291932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 189

               
               
               Conread position:7-259
               
               
               Cow position:chr22:3949945-3950217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):52, 195

               
               
               Conread position:7-260
               
               
               Cow position:chr22:10920157-10919887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):51, 12

               
               
               Conread position:7-260
               
               
               Cow position:chr22:14844270-14844534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):35, 69

               
               
               Conread position:7-263
               
               
               Cow position:chr22:5467664-5467398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 119

               
               
               Conread position:7-266
               
               
               Cow position:chr22:37817469-37817729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):133, 18

               
               
               Conread position:7-266
               
               
               Cow position:chr22:40374310-40374581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 187

               
               
               Conread position:8-247
               
               
               Cow position:chr22:11500487-11500734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):138, 63

               
               
               Conread position:8-258
               
               
               Cow position:chr22:46568184-46567924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:9-258
               
               
               Cow position:chr22:26106764-26107022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):49, 181

               
               
               Conread position:9-265
               
               
               Cow position:chr22:7302139-7301860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:10-285
               
               
               Cow position:chr22:30472753-30473037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 26

               
               
               Conread position:12-253
               
               
               Cow position:chr22:14925013-14924773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):47, 15

               
               
               Conread position:12-255
               
               
               Cow position:chr22:11778903-11778649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):28, 49

               
               
               Conread position:12-260
               
               
               Cow position:chr22:14143397-14143146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):47, 119

               
               
               Conread position:12-260
               
               
               Cow position:chr22:41045205-41044945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:13-258
               
               
               Cow position:chr22:17813939-17814190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):46, 13

               
               
               Conread position:18-258
               
               
               Cow position:chr22:13769195-13769434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):25, 61

               
               
               Conread position:23-172
               
               
               Cow position:chr22:37087594-37087444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):74, 56

               
               
               Conread position:24-259
               
               
               Cow position:chr22:1975334-1975577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:25-258
               
               
               Cow position:chr22:5042041-5042282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):34, 165

               
               
               Conread position:31-207
               
               
               Cow position:chr22:36208670-36208853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):28, 12

               
               
               Conread position:31-265
               
               
               Cow position:chr22:29013607-29013850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):23, 39

               
               
               Conread position:32-259
               
               
               Cow position:chr22:14601242-14601469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):5, 105

               
               
               Conread position:32-266
               
               
               Cow position:chr22:19048074-19047845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):32, 78

               
               
               Conread position:32-275
               
               
               Cow position:chr22:40048292-40048535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):27, 122

               
               
               Conread position:33-254
               
               
               Cow position:chr22:34750407-34750636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):26, 158

               
               
               Conread position:33-258
               
               
               Cow position:chr22:29955269-29955035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):26, 79

               
               
               Conread position:33-259
               
               
               Cow position:chr22:25341750-25341984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):24, 158

               
               
               Conread position:35-265
               
               
               Cow position:chr22:29641841-29642084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):10, 90

               
               
               Conread position:36-255
               
               
               Cow position:chr22:26141007-26141237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 17

               
               
               Conread position:39-259
               
               
               Cow position:chr22:38980643-38980862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):98, 86

               
               
               Conread position:39-266
               
               
               Cow position:chr22:534229-534471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):20, 158

               
               
               Conread position:41-253
               
               
               Cow position:chr22:28731424-28731634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):22, 58

               
               
               Conread position:43-215
               
               
               Cow position:chr22:38313724-38313541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:43-258
               
               
               Cow position:chr22:31593121-31592894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):16, 151

               
               
               Conread position:45-259
               
               
               Cow position:chr22:34606335-34606549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):113, 48

               
               
               Conread position:47-265
               
               
               Cow position:chr22:3253189-3252984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):101, 22

               
               
               Conread position:50-252
               
               
               Cow position:chr22:26658805-26659012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):86, 137

               
               
               Conread position:50-258
               
               
               Cow position:chr22:37324297-37324507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):89, 35

               
               
               Conread position:57-258
               
               
               Cow position:chr22:25222144-25221936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):82, 11

               
               
               Conread position:59-259
               
               
               Cow position:chr22:4026367-4026571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):80, 26

               
               
               Conread position:59-260
               
               
               Cow position:chr22:23403882-23403682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:157
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):99, 115

               
               
               Conread position:62-259
               
               
               Cow position:chr22:1640547-1640334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:63-258
               
               
               Cow position:chr22:20687056-20687268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:63-259
               
               
               Cow position:chr22:25630008-25629797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):53, 134

               
               
               Conread position:65-258
               
               
               Cow position:chr22:25237376-25237183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):132, 86

               
               
               Conread position:82-259
               
               
               Cow position:chr22:3944956-3945141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):57, 109

               
               
               Conread position:121-260
               
               
               Cow position:chr22:12388918-12389063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:1-255
               
               
               Cow position:chr23:37065543-37065809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 30

               
               
               Conread position:1-258
               
               
               Cow position:chr23:10852758-10853022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):58, 26

               
               
               Conread position:1-258
               
               
               Cow position:chr23:13599051-13599314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):140, 51

               
               
               Conread position:4-259
               
               
               Cow position:chr23:9734125-9734385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):135, 64

               
               
               Conread position:4-260
               
               
               Cow position:chr23:10014254-10014510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):55, 21

               
               
               Conread position:5-252
               
               
               Cow position:chr23:10085473-10085219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):54, 16

               
               
               Conread position:6-261
               
               
               Cow position:chr23:20980551-20980806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):32, 140

               
               
               Conread position:7-218
               
               
               Cow position:chr23:20744880-20744662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:175
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):52, 172

               
               
               Conread position:7-255
               
               
               Cow position:chr23:5162136-5162394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr23:6720567-6720316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):52, 123

               
               
               Conread position:7-255
               
               
               Cow position:chr23:7175332-7175583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 18

               
               
               Conread position:7-255
               
               
               Cow position:chr23:34315259-34314991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):36, 52

               
               
               Conread position:7-255
               
               
               Cow position:chr23:38455476-38455215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):52, 188

               
               
               Conread position:7-258
               
               
               Cow position:chr23:3247300-3247554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 16

               
               
               Conread position:7-258
               
               
               Cow position:chr23:13520167-13520419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):55, 38

               
               
               Conread position:7-258
               
               
               Cow position:chr23:15710368-15710103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):39, 93

               
               
               Conread position:7-259
               
               
               Cow position:chr23:27862037-27862301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):25, 189

               
               
               Conread position:7-260
               
               
               Cow position:chr23:7402415-7402675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 179

               
               
               Conread position:7-260
               
               
               Cow position:chr23:22804433-22804696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 26

               
               
               Conread position:7-260
               
               
               Cow position:chr23:39028510-39028752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):124, 65

               
               
               Conread position:7-261
               
               
               Cow position:chr23:18367405-18367672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):52, 46

               
               
               Conread position:7-266
               
               
               Cow position:chr23:1924124-1923860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 181

               
               
               Conread position:9-255
               
               
               Cow position:chr23:30656446-30656208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):101, 10

               
               
               Conread position:13-221
               
               
               Cow position:chr23:4972501-4972713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):53, 44

               
               
               Conread position:13-258
               
               
               Cow position:chr23:36129187-36128937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):51, 145

               
               
               Conread position:25-265
               
               
               Cow position:chr23:36309154-36309397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 49

               
               
               Conread position:32-254
               
               
               Cow position:chr23:21343512-21343285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):110, 25

               
               
               Conread position:32-259
               
               
               Cow position:chr23:21445859-21446090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):20, 37

               
               
               Conread position:33-265
               
               
               Cow position:chr23:1647364-1647594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):12, 113

               
               
               Conread position:33-266
               
               
               Cow position:chr23:11380525-11380271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 165

               
               
               Conread position:34-255
               
               
               Cow position:chr23:16583173-16582942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:179
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:35-264
               
               
               Cow position:chr23:8293238-8293482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):24, 143

               
               
               Conread position:40-247
               
               
               Cow position:chr23:1991685-1991470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:40-259
               
               
               Cow position:chr23:20057125-20056896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):19, 151

               
               
               Conread position:43-221
               
               
               Cow position:chr23:11315272-11315091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):15, 134

               
               
               Conread position:43-255
               
               
               Cow position:chr23:808907-809134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 82

               
               
               Conread position:57-219
               
               
               Cow position:chr23:9599264-9599426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):101, 135

               
               
               Conread position:59-259
               
               
               Cow position:chr23:36076057-36075849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 26

               
               
               Conread position:61-246
               
               
               Cow position:chr23:11080847-11081033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):82, 67

               
               
               Conread position:61-259
               
               
               Cow position:chr23:15742865-15743061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):97, 59

               
               
               Conread position:61-265
               
               
               Cow position:chr23:35254472-35254262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):59, 128

               
               
               Conread position:69-239
               
               
               Cow position:chr23:4421203-4421032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):88, 114

               
               
               Conread position:84-266
               
               
               Cow position:chr23:1742146-1742334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):44, 103

               
               
               Conread position:87-259
               
               
               Cow position:chr23:18296599-18296779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):52, 104

               
               
               Conread position:118-254
               
               
               Cow position:chr23:18107517-18107377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):19, 136

               
               
               Conread position:1-258
               
               
               Cow position:chr24:6450209-6450440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):199, 24

               
               
               Conread position:1-259
               
               
               Cow position:chr24:27906105-27906382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):58, 192

               
               
               Conread position:1-259
               
               
               Cow position:chr24:29679635-29679365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):58, 220

               
               
               Conread position:1-266
               
               
               Cow position:chr24:27052814-27052543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 16

               
               
               Conread position:1-266
               
               
               Cow position:chr24:29596134-29595859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):121, 70

               
               
               Conread position:1-289
               
               
               Cow position:chr24:27270472-27270769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):56, 32

               
               
               Conread position:2-255
               
               
               Cow position:chr24:18970810-18970567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:4-259
               
               
               Cow position:chr24:28721560-28721835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):41, 94

               
               
               Conread position:4-266
               
               
               Cow position:chr24:30484254-30483999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:198
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):55, 27

               
               
               Conread position:4-272
               
               
               Cow position:chr24:33098807-33098528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 39

               
               
               Conread position:7-247
               
               
               Cow position:chr24:28353842-28354081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:190
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):134, 50

               
               
               Conread position:7-254
               
               
               Cow position:chr24:3631200-3631447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):51, 109

               
               
               Conread position:7-254
               
               
               Cow position:chr24:27874285-27874542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:7-255
               
               
               Cow position:chr24:28553863-28553612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):36, 182

               
               
               Conread position:7-255
               
               
               Cow position:chr24:36555145-36554895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):54, 74

               
               
               Conread position:7-258
               
               
               Cow position:chr24:27720066-27719812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:7-259
               
               
               Cow position:chr24:32370228-32369974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):52, 148

               
               
               Conread position:7-259
               
               
               Cow position:chr24:37205193-37204934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):141, 192

               
               
               Conread position:7-260
               
               
               Cow position:chr24:16625818-16625543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:7-273
               
               
               Cow position:chr24:32054354-32054617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):52, 142

               
               
               Conread position:9-269
               
               
               Cow position:chr24:42007431-42007694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):48, 62

               
               
               Conread position:11-255
               
               
               Cow position:chr24:3493580-3493826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 77

               
               
               Conread position:13-260
               
               
               Cow position:chr24:44041321-44041066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 178

               
               
               Conread position:20-266
               
               
               Cow position:chr24:15473051-15473310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):39, 175

               
               
               Conread position:24-177
               
               
               Cow position:chr24:5652276-5652115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:31-258
               
               
               Cow position:chr24:43432509-43432736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):28, 40

               
               
               Conread position:32-255
               
               
               Cow position:chr24:33944115-33944343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):27, 101

               
               
               Conread position:33-215
               
               
               Cow position:chr24:31816294-31816488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):26, 153

               
               
               Conread position:35-259
               
               
               Cow position:chr24:29388961-29389185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):99, 22

               
               
               Conread position:38-258
               
               
               Cow position:chr24:11118994-11119228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):20, 146

               
               
               Conread position:38-270
               
               
               Cow position:chr24:35073806-35074048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):21, 153

               
               
               Conread position:43-221
               
               
               Cow position:chr24:1269523-1269704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):16, 134

               
               
               Conread position:45-255
               
               
               Cow position:chr24:18390564-18390348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):94, 27

               
               
               Conread position:57-258
               
               
               Cow position:chr24:17955712-17955498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):39, 137

               
               
               Conread position:57-259
               
               
               Cow position:chr24:19769234-19769432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:163
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):75, 128

               
               
               Conread position:91-260
               
               
               Cow position:chr24:31382678-31382842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):108, 43

               
               
               Conread position:100-259
               
               
               Cow position:chr24:16509751-16509915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 86

               
               
               Conread position:1-221
               
               
               Cow position:chr25:9055904-9056123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):157, 42

               
               
               Conread position:1-255
               
               
               Cow position:chr25:31733037-31732771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):58, 192

               
               
               Conread position:1-257
               
               
               Cow position:chr25:26111981-26112232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):157, 58

               
               
               Conread position:1-259
               
               
               Cow position:chr25:9957335-9957073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 138

               
               
               Conread position:1-259
               
               
               Cow position:chr25:14791455-14791720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):58, 24

               
               
               Conread position:1-265
               
               
               Cow position:chr25:26087214-26087490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 196

               
               
               Conread position:4-255
               
               
               Cow position:chr25:6891825-6891564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):30, 193

               
               
               Conread position:4-258
               
               
               Cow position:chr25:12204172-12204435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 188

               
               
               Conread position:4-259
               
               
               Cow position:chr25:41364277-41364019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):55, 148

               
               
               Conread position:7-245
               
               
               Cow position:chr25:18564200-18564442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 170

               
               
               Conread position:7-252
               
               
               Cow position:chr25:5514714-5514969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):52, 15

               
               
               Conread position:7-255
               
               
               Cow position:chr25:25827166-25827431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:201
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):27, 210

               
               
               Conread position:7-259
               
               
               Cow position:chr25:2110788-2111034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):52, 116

               
               
               Conread position:7-259
               
               
               Cow position:chr25:30319744-30319477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:7-259
               
               
               Cow position:chr25:36761811-36762071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):49, 184

               
               
               Conread position:7-265
               
               
               Cow position:chr25:26654612-26654882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 186

               
               
               Conread position:7-265
               
               
               Cow position:chr25:36779201-36779469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):54, 79

               
               
               Conread position:15-289
               
               
               Cow position:chr25:6424872-6424591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):126, 177

               
               
               Conread position:26-265
               
               
               Cow position:chr25:12261170-12260920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):33, 64

               
               
               Conread position:27-259
               
               
               Cow position:chr25:36081600-36081843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):32, 21

               
               
               Conread position:32-260
               
               
               Cow position:chr25:12824285-12824052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):11, 125

               
               
               Conread position:33-258
               
               
               Cow position:chr25:35332902-35333124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):8, 28

               
               
               Conread position:35-259
               
               
               Cow position:chr25:13642583-13642345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:35-259
               
               
               Cow position:chr25:35625438-35625217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):104, 52

               
               
               Conread position:37-245
               
               
               Cow position:chr25:18988112-18988339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):7, 25

               
               
               Conread position:41-259
               
               
               Cow position:chr25:9961439-9961204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):18, 165

               
               
               Conread position:44-266
               
               
               Cow position:chr25:16001779-16001552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:181
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):15, 145

               
               
               Conread position:52-258
               
               
               Cow position:chr25:38425118-38425327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):123, 93

               
               
               Conread position:57-221
               
               
               Cow position:chr25:18293515-18293674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):101, 11

               
               
               Conread position:57-254
               
               
               Cow position:chr25:36026765-36026970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):82, 132

               
               
               Conread position:57-259
               
               
               Cow position:chr25:4002554-4002767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):84, 135

               
               
               Conread position:61-255
               
               
               Cow position:chr25:1762869-1763051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:61-285
               
               
               Cow position:chr25:15286779-15286550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):8, 94

               
               
               Conread position:63-255
               
               
               Cow position:chr25:12840954-12840760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):97, 70

               
               
               Conread position:103-253
               
               
               Cow position:chr25:12755687-12755530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 86

               
               
               Conread position:135-255
               
               
               Cow position:chr25:15440938-15440814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 50

               
               
               Conread position:4-256
               
               
               Cow position:chr26:16549704-16549967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):55, 21

               
               
               Conread position:5-266
               
               
               Cow position:chr26:25737193-25737464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):54, 256

               
               
               Conread position:7-175
               
               
               Cow position:chr26:18825549-18825379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):52, 81

               
               
               Conread position:7-252
               
               
               Cow position:chr26:31889815-31890071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):65, 23

               
               
               Conread position:7-255
               
               
               Cow position:chr26:11134972-11134714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):51, 94

               
               
               Conread position:7-259
               
               
               Cow position:chr26:32776782-32776522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 99

               
               
               Conread position:7-260
               
               
               Cow position:chr26:19459399-19459671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 18

               
               
               Conread position:7-260
               
               
               Cow position:chr26:35448807-35449046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):121, 51

               
               
               Conread position:7-265
               
               
               Cow position:chr26:4585486-4585217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):52, 186

               
               
               Conread position:7-265
               
               
               Cow position:chr26:23926253-23925995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 36

               
               
               Conread position:7-266
               
               
               Cow position:chr26:6447883-6447609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 64

               
               
               Conread position:7-267
               
               
               Cow position:chr26:6497980-6498255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):49, 194

               
               
               Conread position:11-255
               
               
               Cow position:chr26:2531446-2531200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):53, 34

               
               
               Conread position:17-196
               
               
               Cow position:chr26:30752130-30751942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):42, 176

               
               
               Conread position:27-259
               
               
               Cow position:chr26:9666666-9666424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):5, 112

               
               
               Conread position:31-273
               
               
               Cow position:chr26:29332848-29333091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):28, 75

               
               
               Conread position:32-255
               
               
               Cow position:chr26:9867365-9867136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):26, 39

               
               
               Conread position:32-260
               
               
               Cow position:chr26:23097427-23097197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):24, 13

               
               
               Conread position:33-259
               
               
               Cow position:chr26:16921689-16921924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):26, 136

               
               
               Conread position:33-259
               
               
               Cow position:chr26:33011909-33011682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):99, 43

               
               
               Conread position:35-253
               
               
               Cow position:chr26:4854289-4854518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:35-267
               
               
               Cow position:chr26:8810884-8811124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):24, 153

               
               
               Conread position:37-254
               
               
               Cow position:chr26:10768147-10767931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):9, 76

               
               
               Conread position:38-250
               
               
               Cow position:chr26:3182194-3181969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):21, 148

               
               
               Conread position:38-259
               
               
               Cow position:chr26:21991871-21992088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):117, 19

               
               
               Conread position:39-266
               
               
               Cow position:chr26:33160741-33160509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):20, 147

               
               
               Conread position:44-255
               
               
               Cow position:chr26:9850332-9850118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):15, 63

               
               
               Conread position:44-255
               
               
               Cow position:chr26:9853842-9853628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):15, 63

               
               
               Conread position:50-259
               
               
               Cow position:chr26:31779244-31779467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:57-289
               
               
               Cow position:chr26:25245200-25244956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):99, 161

               
               
               Conread position:61-259
               
               
               Cow position:chr26:8642739-8642930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):139, 56

               
               
               Conread position:61-263
               
               
               Cow position:chr26:7224835-7224642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):97, 67

               
               
               Conread position:68-267
               
               
               Cow position:chr26:1587388-1587588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):54, 61

               
               
               Conread position:81-253
               
               
               Cow position:chr26:20013280-20013457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):58, 123

               
               
               Conread position:120-258
               
               
               Cow position:chr26:6252696-6252836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):11, 67

               
               
               Conread position:135-259
               
               
               Cow position:chr26:31633587-31633714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:1-255
               
               
               Cow position:chr27:23930219-23929968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):58, 144

               
               
               Conread position:1-255
               
               
               Cow position:chr27:28921644-28921905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:204
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):62, 24

               
               
               Conread position:1-255
               
               
               Cow position:chr27:30868485-30868748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:203
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):63, 73

               
               
               Conread position:1-265
               
               
               Cow position:chr27:31372725-31372996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 40

               
               
               Conread position:1-266
               
               
               Cow position:chr27:4385810-4386080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):58, 158

               
               
               Conread position:1-266
               
               
               Cow position:chr27:28189962-28190233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):58, 191

               
               
               Conread position:3-258
               
               
               Cow position:chr27:27843738-27844006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:204
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):5, 192

               
               
               Conread position:3-266
               
               
               Cow position:chr27:31147420-31147688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):56, 130

               
               
               Conread position:4-255
               
               
               Cow position:chr27:15315741-15315498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):54, 66

               
               
               Conread position:4-258
               
               
               Cow position:chr27:25791064-25790792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):28, 195

               
               
               Conread position:5-265
               
               
               Cow position:chr27:24227542-24227812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 217

               
               
               Conread position:7-221
               
               
               Cow position:chr27:1294169-1294388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 169

               
               
               Conread position:7-254
               
               
               Cow position:chr27:24331978-24331714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:7-258
               
               
               Cow position:chr27:15867636-15867386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 50

               
               
               Conread position:7-259
               
               
               Cow position:chr27:1768389-1768633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):52, 18

               
               
               Conread position:7-259
               
               
               Cow position:chr27:15925583-15925329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):52, 36

               
               
               Conread position:7-266
               
               
               Cow position:chr27:11255762-11255501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):52, 124

               
               
               Conread position:8-266
               
               
               Cow position:chr27:16238144-16237892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):51, 109

               
               
               Conread position:9-255
               
               
               Cow position:chr27:28518532-28518287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 62

               
               
               Conread position:9-259
               
               
               Cow position:chr27:22418520-22418779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):60, 26

               
               
               Conread position:14-271
               
               
               Cow position:chr27:536699-536442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):45, 76

               
               
               Conread position:17-254
               
               
               Cow position:chr27:14902410-14902659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):39, 168

               
               
               Conread position:23-258
               
               
               Cow position:chr27:17473046-17472798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:27-253
               
               
               Cow position:chr27:27640760-27641007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):5, 244

               
               
               Conread position:29-260
               
               
               Cow position:chr27:23554096-23554343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):111, 28

               
               
               Conread position:32-266
               
               
               Cow position:chr27:28001599-28001829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:179
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):165, 7

               
               
               Conread position:33-255
               
               
               Cow position:chr27:30765255-30765028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:173
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):26, 144

               
               
               Conread position:33-259
               
               
               Cow position:chr27:6523269-6523026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:33-265
               
               
               Cow position:chr27:12596980-12596748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):9, 74

               
               
               Conread position:33-266
               
               
               Cow position:chr27:19661166-19660916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:34-258
               
               
               Cow position:chr27:1183654-1183888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):25, 73

               
               
               Conread position:35-260
               
               
               Cow position:chr27:2592762-2592535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):24, 125

               
               
               Conread position:36-260
               
               
               Cow position:chr27:26218915-26218693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):112, 17

               
               
               Conread position:37-260
               
               
               Cow position:chr27:30354126-30354356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):29, 131

               
               
               Conread position:40-270
               
               
               Cow position:chr27:2682927-2683167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):19, 151

               
               
               Conread position:41-260
               
               
               Cow position:chr27:18558579-18558346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):18, 135

               
               
               Conread position:50-253
               
               
               Cow position:chr27:20354783-20354578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):98, 78

               
               
               Conread position:50-255
               
               
               Cow position:chr27:29251083-29250870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):91, 159

               
               
               Conread position:57-255
               
               
               Cow position:chr27:6037318-6037115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):89, 11

               
               
               Conread position:79-259
               
               
               Cow position:chr27:9169470-9169657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):62, 110

               
               
               Conread position:98-259
               
               
               Cow position:chr27:23891093-23890927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):44, 90

               
               
               Conread position:116-255
               
               
               Cow position:chr27:6350700-6350845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 18

               
               
               Conread position:1-258
               
               
               Cow position:chr28:5826655-5826924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):58, 130

               
               
               Conread position:1-264
               
               
               Cow position:chr28:15044149-15043884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):52, 103

               
               
               Conread position:1-266
               
               
               Cow position:chr28:9390658-9390384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 190

               
               
               Conread position:3-264
               
               
               Cow position:chr28:4308189-4307925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 76

               
               
               Conread position:4-254
               
               
               Cow position:chr28:18354606-18354355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):58, 21

               
               
               Conread position:4-258
               
               
               Cow position:chr28:22171009-22170743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):44, 18

               
               
               Conread position:4-259
               
               
               Cow position:chr28:2124149-2124402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):137, 51

               
               
               Conread position:4-259
               
               
               Cow position:chr28:8347432-8347705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):55, 195

               
               
               Conread position:7-175
               
               
               Cow position:chr28:12964290-12964460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):54, 100

               
               
               Conread position:7-221
               
               
               Cow position:chr28:5805232-5805453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):23, 72

               
               
               Conread position:7-234
               
               
               Cow position:chr28:31872034-31871797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):52, 94

               
               
               Conread position:7-253
               
               
               Cow position:chr28:13267494-13267754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 7

               
               
               Conread position:7-255
               
               
               Cow position:chr28:26922659-26922397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):25, 72

               
               
               Conread position:7-255
               
               
               Cow position:chr28:34082305-34082047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):127, 50

               
               
               Conread position:7-259
               
               
               Cow position:chr28:19295649-19295386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):49, 32

               
               
               Conread position:7-259
               
               
               Cow position:chr28:23008015-23007760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):54, 132

               
               
               Conread position:7-265
               
               
               Cow position:chr28:10606899-10606648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):161, 43

               
               
               Conread position:7-265
               
               
               Cow position:chr28:21598540-21598274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):52, 103

               
               
               Conread position:7-266
               
               
               Cow position:chr28:9426629-9426372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):51, 124

               
               
               Conread position:7-266
               
               
               Cow position:chr28:21380594-21380860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):134, 52

               
               
               Conread position:8-251
               
               
               Cow position:chr28:7228670-7228419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):16, 110

               
               
               Conread position:8-255
               
               
               Cow position:chr28:7684963-7684713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):55, 83

               
               
               Conread position:9-259
               
               
               Cow position:chr28:20312989-20313249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 93

               
               
               Conread position:12-258
               
               
               Cow position:chr28:7590466-7590208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):28, 183

               
               
               Conread position:17-265
               
               
               Cow position:chr28:23839931-23840181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):13, 55

               
               
               Conread position:19-260
               
               
               Cow position:chr28:15263999-15263742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):40, 24

               
               
               Conread position:20-259
               
               
               Cow position:chr28:27218048-27218298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):39, 12

               
               
               Conread position:23-254
               
               
               Cow position:chr28:23675873-23676107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):40, 156

               
               
               Conread position:23-255
               
               
               Cow position:chr28:34878244-34878000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):36, 170

               
               
               Conread position:23-259
               
               
               Cow position:chr28:23410596-23410351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):16, 168

               
               
               Conread position:23-264
               
               
               Cow position:chr28:17287953-17288197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):35, 137

               
               
               Conread position:26-259
               
               
               Cow position:chr28:8408474-8408708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):36, 6

               
               
               Conread position:32-259
               
               
               Cow position:chr28:24996851-24996615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):10, 61

               
               
               Conread position:32-260
               
               
               Cow position:chr28:16244021-16243784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):24, 151

               
               
               Conread position:33-237
               
               
               Cow position:chr28:15688780-15688992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):26, 37

               
               
               Conread position:33-252
               
               
               Cow position:chr28:26719099-26719317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):26, 55

               
               
               Conread position:37-265
               
               
               Cow position:chr28:24343109-24343350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):21, 52

               
               
               Conread position:42-247
               
               
               Cow position:chr28:16386758-16386546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):17, 147

               
               
               Conread position:44-255
               
               
               Cow position:chr28:28076654-28076440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):97, 15

               
               
               Conread position:44-266
               
               
               Cow position:chr28:22321172-22321407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):18, 150

               
               
               Conread position:45-247
               
               
               Cow position:chr28:2898746-2898960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:50-265
               
               
               Cow position:chr28:11423045-11422836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):108, 38

               
               
               Conread position:61-260
               
               
               Cow position:chr28:12951202-12951404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):76, 115

               
               
               Conread position:62-254
               
               
               Cow position:chr28:8656965-8656772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:64-260
               
               
               Cow position:chr28:10053566-10053358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):55, 131

               
               
               Conread position:65-263
               
               
               Cow position:chr28:10478571-10478367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):8, 130

               
               
               Conread position:66-180
               
               
               Cow position:chr28:5074729-5074614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):71, 6

               
               
               Conread position:116-259
               
               
               Cow position:chr28:25728030-25728173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):42, 31

               
               
               Conread position:135-255
               
               
               Cow position:chr28:19023986-19024110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):14, 79

               
               
               Conread position:135-259
               
               
               Cow position:chr28:26982893-26982763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:1-221
               
               
               Cow position:chr29:10456852-10456630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):62, 175

               
               
               Conread position:1-230
               
               
               Cow position:chr29:26519761-26519523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):58, 122

               
               
               Conread position:1-253
               
               
               Cow position:chr29:16657391-16657651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):140, 79

               
               
               Conread position:1-255
               
               
               Cow position:chr29:20626277-20626539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):63, 188

               
               
               Conread position:1-258
               
               
               Cow position:chr29:28195816-28195547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):58, 24

               
               
               Conread position:4-255
               
               
               Cow position:chr29:45589882-45589628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):43, 127

               
               
               Conread position:4-258
               
               
               Cow position:chr29:29551026-29551282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):67, 19

               
               
               Conread position:5-259
               
               
               Cow position:chr29:32800003-32799741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 135

               
               
               Conread position:7-220
               
               
               Cow position:chr29:35501939-35501723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:7-253
               
               
               Cow position:chr29:12005058-12004800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 64

               
               
               Conread position:7-255
               
               
               Cow position:chr29:2644602-2644340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):21, 113

               
               
               Conread position:7-255
               
               
               Cow position:chr29:7041129-7040881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):57, 97

               
               
               Conread position:7-255
               
               
               Cow position:chr29:12798638-12798882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):52, 28

               
               
               Conread position:7-255
               
               
               Cow position:chr29:13372372-13372628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):51, 26

               
               
               Conread position:7-255
               
               
               Cow position:chr29:37292477-37292742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):25, 183

               
               
               Conread position:7-255
               
               
               Cow position:chr29:39567392-39567650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):34, 68

               
               
               Conread position:7-259
               
               
               Cow position:chr29:9686303-9686035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):30, 190

               
               
               Conread position:7-259
               
               
               Cow position:chr29:24952392-24952655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:202
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):52, 64

               
               
               Conread position:7-260
               
               
               Cow position:chr29:28775748-28775492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 152

               
               
               Conread position:9-246
               
               
               Cow position:chr29:26771149-26771388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):50, 61

               
               
               Conread position:10-260
               
               
               Cow position:chr29:3395822-3396073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 15

               
               
               Conread position:10-265
               
               
               Cow position:chr29:17668215-17668462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):127, 23

               
               
               Conread position:11-223
               
               
               Cow position:chr29:36633124-36632910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):48, 105

               
               
               Conread position:12-265
               
               
               Cow position:chr29:699898-699646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):128, 45

               
               
               Conread position:22-175
               
               
               Cow position:chr29:36356572-36356732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:23-252
               
               
               Cow position:chr29:39111586-39111355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):36, 91

               
               
               Conread position:23-255
               
               
               Cow position:chr29:19907078-19907318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 74

               
               
               Conread position:26-255
               
               
               Cow position:chr29:4065814-4066048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):7, 36

               
               
               Conread position:33-223
               
               
               Cow position:chr29:21933381-21933181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:34-258
               
               
               Cow position:chr29:22069014-22068780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):25, 89

               
               
               Conread position:35-255
               
               
               Cow position:chr29:94811-94591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):113, 36

               
               
               Conread position:35-267
               
               
               Cow position:chr29:22175427-22175662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):91, 129

               
               
               Conread position:37-252
               
               
               Cow position:chr29:5919589-5919362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):22, 175

               
               
               Conread position:37-252
               
               
               Cow position:chr29:29769610-29769392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):22, 148

               
               
               Conread position:37-259
               
               
               Cow position:chr29:41530588-41530814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):15, 31

               
               
               Conread position:38-266
               
               
               Cow position:chr29:40891965-40891722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):20, 160

               
               
               Conread position:40-148
               
               
               Cow position:chr29:629375-629482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):97, 19

               
               
               Conread position:41-253
               
               
               Cow position:chr29:18212242-18212032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):17, 30

               
               
               Conread position:44-255
               
               
               Cow position:chr29:32767774-32767560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):97, 15

               
               
               Conread position:45-259
               
               
               Cow position:chr29:32963298-32963523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):13, 154

               
               
               Conread position:50-258
               
               
               Cow position:chr29:4194369-4194151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):91, 61

               
               
               Conread position:59-258
               
               
               Cow position:chr29:11915577-11915786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):79, 148

               
               
               Conread position:61-265
               
               
               Cow position:chr29:4520098-4520308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):78, 126

               
               
               Conread position:62-258
               
               
               Cow position:chr29:36183039-36183247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 47

               
               
               Conread position:65-255
               
               
               Cow position:chr29:19254056-19253857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:70-260
               
               
               Cow position:chr29:19821068-19821255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):124, 69

               
               
               Conread position:78-273
               
               
               Cow position:chr29:463874-463676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):65, 115

               
               
               Conread position:82-254
               
               
               Cow position:chr29:31489103-31489282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):44, 98

               
               
               Conread position:83-259
               
               
               Cow position:chr29:22778397-22778210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):58, 109

               
               
               Conread position:106-255
               
               
               Cow position:chr29:12025658-12025507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 78

               
               
               Conread position:1-255
               
               
               Cow position:chr3:2483134-2483387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):57, 24

               
               
               Conread position:1-255
               
               
               Cow position:chr3:3164815-3164556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):58, 24

               
               
               Conread position:1-255
               
               
               Cow position:chr3:7566738-7566484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):58, 19

               
               
               Conread position:1-255
               
               
               Cow position:chr3:22872374-22872106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:1-255
               
               
               Cow position:chr3:42177838-42178099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):64, 187

               
               
               Conread position:1-255
               
               
               Cow position:chr3:53150004-53150268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):33, 184

               
               
               Conread position:1-258
               
               
               Cow position:chr3:5365363-5365621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:203
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):33, 128

               
               
               Conread position:1-258
               
               
               Cow position:chr3:79208313-79208054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):140, 40

               
               
               Conread position:1-259
               
               
               Cow position:chr3:15052264-15052007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):36, 61

               
               
               Conread position:1-260
               
               
               Cow position:chr3:79292513-79292775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:1-264
               
               
               Cow position:chr3:14466026-14465764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):57, 106

               
               
               Conread position:1-265
               
               
               Cow position:chr3:17952334-17952607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 189

               
               
               Conread position:1-265
               
               
               Cow position:chr3:39328090-39328346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):71, 96

               
               
               Conread position:2-255
               
               
               Cow position:chr3:4031644-4031911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):31, 198

               
               
               Conread position:2-255
               
               
               Cow position:chr3:46900875-46901138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):57, 7

               
               
               Conread position:3-265
               
               
               Cow position:chr3:53384603-53384334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 178

               
               
               Conread position:4-221
               
               
               Cow position:chr3:53903870-53904092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):54, 21

               
               
               Conread position:4-255
               
               
               Cow position:chr3:79592207-79591941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):55, 21

               
               
               Conread position:4-258
               
               
               Cow position:chr3:2506798-2506532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 190

               
               
               Conread position:4-258
               
               
               Cow position:chr3:18066815-18067079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 180

               
               
               Conread position:4-259
               
               
               Cow position:chr3:75727908-75727638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:5-259
               
               
               Cow position:chr3:34270616-34270860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):54, 20

               
               
               Conread position:7-220
               
               
               Cow position:chr3:78782658-78782870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):52, 82

               
               
               Conread position:7-247
               
               
               Cow position:chr3:54782327-54782085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):52, 25

               
               
               Conread position:7-252
               
               
               Cow position:chr3:72390767-72391023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):38, 54

               
               
               Conread position:7-253
               
               
               Cow position:chr3:74088477-74088232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):135, 45

               
               
               Conread position:7-254
               
               
               Cow position:chr3:33633202-33632952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):47, 128

               
               
               Conread position:7-255
               
               
               Cow position:chr3:2393288-2393022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):33, 194

               
               
               Conread position:7-255
               
               
               Cow position:chr3:18459836-18459581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 181

               
               
               Conread position:7-255
               
               
               Cow position:chr3:27544650-27544392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:7-255
               
               
               Cow position:chr3:49218623-49218373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):52, 64

               
               
               Conread position:7-256
               
               
               Cow position:chr3:72675771-72676034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 181

               
               
               Conread position:7-258
               
               
               Cow position:chr3:49650064-49650328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:207
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):51, 64

               
               
               Conread position:7-258
               
               
               Cow position:chr3:59596889-59597127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):52, 8

               
               
               Conread position:7-258
               
               
               Cow position:chr3:67704220-67704486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:206
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):29, 182

               
               
               Conread position:7-259
               
               
               Cow position:chr3:28898544-28898276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:7-259
               
               
               Cow position:chr3:48296395-48296654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):50, 183

               
               
               Conread position:7-260
               
               
               Cow position:chr3:31903424-31903168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):60, 197

               
               
               Conread position:7-265
               
               
               Cow position:chr3:1830881-1830624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:7-265
               
               
               Cow position:chr3:59451279-59451540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:203
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):52, 66

               
               
               Conread position:7-266
               
               
               Cow position:chr3:80082133-80081871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):52, 76

               
               
               Conread position:7-270
               
               
               Cow position:chr3:68586725-68586977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):52, 18

               
               
               Conread position:8-253
               
               
               Cow position:chr3:69751016-69750764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):51, 197

               
               
               Conread position:8-254
               
               
               Cow position:chr3:59271244-59271480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):150, 51

               
               
               Conread position:8-259
               
               
               Cow position:chr3:65058387-65058646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):51, 63

               
               
               Conread position:8-266
               
               
               Cow position:chr3:82460868-82461130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):51, 130

               
               
               Conread position:9-218
               
               
               Cow position:chr3:38346889-38347107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):50, 23

               
               
               Conread position:9-244
               
               
               Cow position:chr3:71497460-71497214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):50, 187

               
               
               Conread position:9-255
               
               
               Cow position:chr3:5101074-5100826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 70

               
               
               Conread position:9-259
               
               
               Cow position:chr3:71231092-71231343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):49, 128

               
               
               Conread position:9-266
               
               
               Cow position:chr3:14626464-14626205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 175

               
               
               Conread position:9-272
               
               
               Cow position:chr3:53270511-53270787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):14, 185

               
               
               Conread position:10-260
               
               
               Cow position:chr3:44535073-44534814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 50

               
               
               Conread position:13-255
               
               
               Cow position:chr3:65968845-65969102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 58

               
               
               Conread position:13-266
               
               
               Cow position:chr3:37041118-37041366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):7, 134

               
               
               Conread position:15-260
               
               
               Cow position:chr3:35975413-35975162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):44, 173

               
               
               Conread position:17-258
               
               
               Cow position:chr3:53739499-53739242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):25, 180

               
               
               Conread position:18-258
               
               
               Cow position:chr3:70401598-70401845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:191
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):41, 53

               
               
               Conread position:23-196
               
               
               Cow position:chr3:48852266-48852081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 57

               
               
               Conread position:23-258
               
               
               Cow position:chr3:54959891-54960132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 48

               
               
               Conread position:31-253
               
               
               Cow position:chr3:44932222-44932451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):108, 7

               
               
               Conread position:32-258
               
               
               Cow position:chr3:20437934-20437708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):10, 37

               
               
               Conread position:32-259
               
               
               Cow position:chr3:54862715-54862470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):27, 186

               
               
               Conread position:32-264
               
               
               Cow position:chr3:65413566-65413331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):27, 39

               
               
               Conread position:32-289
               
               
               Cow position:chr3:18854802-18855071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:33-177
               
               
               Cow position:chr3:19822256-19822108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:33-255
               
               
               Cow position:chr3:58540820-58540586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):108, 159

               
               
               Conread position:33-259
               
               
               Cow position:chr3:23471758-23471522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):26, 153

               
               
               Conread position:33-266
               
               
               Cow position:chr3:5096913-5097158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:35-247
               
               
               Cow position:chr3:56704825-56704611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):24, 103

               
               
               Conread position:35-252
               
               
               Cow position:chr3:23876710-23876932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):24, 154

               
               
               Conread position:35-259
               
               
               Cow position:chr3:38691692-38691462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):24, 8

               
               
               Conread position:39-244
               
               
               Cow position:chr3:364503-364282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:42-253
               
               
               Cow position:chr3:51234371-51234156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):97, 11

               
               
               Conread position:42-255
               
               
               Cow position:chr3:77365575-77365357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):17, 79

               
               
               Conread position:43-258
               
               
               Cow position:chr3:55124558-55124340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):16, 149

               
               
               Conread position:43-259
               
               
               Cow position:chr3:57763943-57764171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):16, 151

               
               
               Conread position:43-259
               
               
               Cow position:chr3:75158085-75158304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):15, 134

               
               
               Conread position:44-260
               
               
               Cow position:chr3:49731916-49731695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):15, 120

               
               
               Conread position:44-266
               
               
               Cow position:chr3:44101702-44101923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):15, 75

               
               
               Conread position:45-255
               
               
               Cow position:chr3:68627953-68627746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):14, 118

               
               
               Conread position:46-255
               
               
               Cow position:chr3:73394843-73395062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):88, 13

               
               
               Conread position:57-241
               
               
               Cow position:chr3:59701750-59701936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):103, 77

               
               
               Conread position:58-259
               
               
               Cow position:chr3:57624201-57624409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):22, 133

               
               
               Conread position:62-254
               
               
               Cow position:chr3:8604272-8604074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):77, 143

               
               
               Conread position:62-265
               
               
               Cow position:chr3:4087424-4087213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:168
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:64-247
               
               
               Cow position:chr3:23269846-23270031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):68, 109

               
               
               Conread position:68-255
               
               
               Cow position:chr3:41328203-41328387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):90, 106

               
               
               Conread position:72-259
               
               
               Cow position:chr3:2680263-2680461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):59, 123

               
               
               Conread position:81-266
               
               
               Cow position:chr3:80922329-80922529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 108

               
               
               Conread position:98-251
               
               
               Cow position:chr3:49140259-49140105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):8, 77

               
               
               Conread position:126-258
               
               
               Cow position:chr3:78739667-78739799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 58

               
               
               Conread position:1-252
               
               
               Cow position:chr4:56240152-56239901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):32, 193

               
               
               Conread position:1-258
               
               
               Cow position:chr4:10055905-10056171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):58, 154

               
               
               Conread position:1-259
               
               
               Cow position:chr4:509204-508947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):58, 185

               
               
               Conread position:1-260
               
               
               Cow position:chr4:27276849-27276583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 190

               
               
               Conread position:1-264
               
               
               Cow position:chr4:12048942-12049211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):70, 24

               
               
               Conread position:1-265
               
               
               Cow position:chr4:19313699-19313978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):58, 70

               
               
               Conread position:1-265
               
               
               Cow position:chr4:34166271-34166010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):132, 22

               
               
               Conread position:3-261
               
               
               Cow position:chr4:43543038-43542773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):56, 211

               
               
               Conread position:3-266
               
               
               Cow position:chr4:14414648-14414376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):23, 56

               
               
               Conread position:4-253
               
               
               Cow position:chr4:65815995-65815750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):55, 131

               
               
               Conread position:4-255
               
               
               Cow position:chr4:10905760-10905508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):55, 29

               
               
               Conread position:4-255
               
               
               Cow position:chr4:11099968-11099712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):130, 53

               
               
               Conread position:4-258
               
               
               Cow position:chr4:45738782-45738519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):60, 21

               
               
               Conread position:4-260
               
               
               Cow position:chr4:22051771-22051512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):11, 40

               
               
               Conread position:4-260
               
               
               Cow position:chr4:54501752-54501487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:202
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):54, 169

               
               
               Conread position:4-264
               
               
               Cow position:chr4:68944479-68944207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):55, 210

               
               
               Conread position:5-255
               
               
               Cow position:chr4:61972775-61972504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):54, 6

               
               
               Conread position:7-196
               
               
               Cow position:chr4:4736737-4736927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):30, 66

               
               
               Conread position:7-247
               
               
               Cow position:chr4:22073611-22073366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):19, 66

               
               
               Conread position:7-247
               
               
               Cow position:chr4:67444845-67445096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):52, 73

               
               
               Conread position:7-255
               
               
               Cow position:chr4:8439743-8439481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:7-255
               
               
               Cow position:chr4:61215298-61215040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:7-258
               
               
               Cow position:chr4:44782074-44782333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 171

               
               
               Conread position:7-259
               
               
               Cow position:chr4:20626-20879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):120, 61

               
               
               Conread position:7-259
               
               
               Cow position:chr4:23853903-23854151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:200
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):19, 154

               
               
               Conread position:7-259
               
               
               Cow position:chr4:25879097-25879359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:7-259
               
               
               Cow position:chr4:48137614-48137872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 50

               
               
               Conread position:7-259
               
               
               Cow position:chr4:68764217-68764484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):38, 91

               
               
               Conread position:7-265
               
               
               Cow position:chr4:15904801-15905065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):52, 25

               
               
               Conread position:7-265
               
               
               Cow position:chr4:30574156-30574416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 124

               
               
               Conread position:7-265
               
               
               Cow position:chr4:51903302-51903569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 253

               
               
               Conread position:7-266
               
               
               Cow position:chr4:30974037-30974309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):55, 186

               
               
               Conread position:7-266
               
               
               Cow position:chr4:49424544-49424794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):52, 18

               
               
               Conread position:8-221
               
               
               Cow position:chr4:53208005-53208217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):51, 17

               
               
               Conread position:8-247
               
               
               Cow position:chr4:53545730-53545977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):51, 172

               
               
               Conread position:8-255
               
               
               Cow position:chr4:65891693-65891949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):45, 124

               
               
               Conread position:8-266
               
               
               Cow position:chr4:14919712-14919962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):135, 45

               
               
               Conread position:9-258
               
               
               Cow position:chr4:11671155-11671414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):34, 16

               
               
               Conread position:9-259
               
               
               Cow position:chr4:22236773-22236519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):50, 145

               
               
               Conread position:9-259
               
               
               Cow position:chr4:54190801-54191050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):14, 62

               
               
               Conread position:11-221
               
               
               Cow position:chr4:10703981-10703759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):49, 202

               
               
               Conread position:11-252
               
               
               Cow position:chr4:12003927-12004179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 187

               
               
               Conread position:11-258
               
               
               Cow position:chr4:45589883-45589641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):28, 60

               
               
               Conread position:12-270
               
               
               Cow position:chr4:43370145-43369881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 178

               
               
               Conread position:13-266
               
               
               Cow position:chr4:2609944-2610199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):51, 86

               
               
               Conread position:14-259
               
               
               Cow position:chr4:57555673-57555932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):45, 158

               
               
               Conread position:18-266
               
               
               Cow position:chr4:39128242-39128502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):41, 25

               
               
               Conread position:19-255
               
               
               Cow position:chr4:56570515-56570764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):15, 174

               
               
               Conread position:21-266
               
               
               Cow position:chr4:17474151-17474407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:27-266
               
               
               Cow position:chr4:4321286-4321033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):32, 171

               
               
               Conread position:31-258
               
               
               Cow position:chr4:8801227-8801467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):21, 130

               
               
               Conread position:31-266
               
               
               Cow position:chr4:15439321-15439546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):20, 80

               
               
               Conread position:32-204
               
               
               Cow position:chr4:40576191-40576015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:148
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):27, 39

               
               
               Conread position:32-251
               
               
               Cow position:chr4:52748733-52748505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:179
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):27, 158

               
               
               Conread position:33-233
               
               
               Cow position:chr4:28772341-28772133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):26, 158

               
               
               Conread position:33-252
               
               
               Cow position:chr4:51739977-51739755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):26, 144

               
               
               Conread position:33-253
               
               
               Cow position:chr4:44612729-44612959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):31, 159

               
               
               Conread position:33-254
               
               
               Cow position:chr4:62570541-62570774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 144

               
               
               Conread position:33-259
               
               
               Cow position:chr4:54930690-54930459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):26, 63

               
               
               Conread position:33-260
               
               
               Cow position:chr4:57931637-57931875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:39-255
               
               
               Cow position:chr4:46597115-46597335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):20, 31

               
               
               Conread position:41-253
               
               
               Cow position:chr4:54667957-54667733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):17, 154

               
               
               Conread position:42-274
               
               
               Cow position:chr4:34641994-34641752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):17, 131

               
               
               Conread position:43-258
               
               
               Cow position:chr4:32725960-32726186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):16, 151

               
               
               Conread position:44-255
               
               
               Cow position:chr4:12560777-12560985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):111, 17

               
               
               Conread position:44-260
               
               
               Cow position:chr4:23445314-23445087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):15, 30

               
               
               Conread position:50-203
               
               
               Cow position:chr4:19708687-19708846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:50-259
               
               
               Cow position:chr4:42922100-42921893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):108, 139

               
               
               Conread position:51-254
               
               
               Cow position:chr4:31004657-31004451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):97, 9

               
               
               Conread position:51-255
               
               
               Cow position:chr4:52167099-52166896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):13, 28

               
               
               Conread position:57-255
               
               
               Cow position:chr4:29291275-29291476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):64, 73

               
               
               Conread position:57-260
               
               
               Cow position:chr4:43909505-43909705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):140, 71

               
               
               Conread position:58-240
               
               
               Cow position:chr4:26307746-26307557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):81, 62

               
               
               Conread position:58-247
               
               
               Cow position:chr4:53447912-53447719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:60-259
               
               
               Cow position:chr4:34383581-34383382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):98, 70

               
               
               Conread position:69-254
               
               
               Cow position:chr4:25359376-25359566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):74, 18

               
               
               Conread position:71-259
               
               
               Cow position:chr4:21258983-21259177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):68, 131

               
               
               Conread position:74-259
               
               
               Cow position:chr4:13222406-13222222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):74, 107

               
               
               Conread position:75-259
               
               
               Cow position:chr4:22860935-22860752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):83, 121

               
               
               Conread position:76-258
               
               
               Cow position:chr4:13255865-13256048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):46, 54

               
               
               Conread position:79-254
               
               
               Cow position:chr4:37465809-37465635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):61, 26

               
               
               Conread position:80-255
               
               
               Cow position:chr4:44973418-44973594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):78, 120

               
               
               Conread position:86-259
               
               
               Cow position:chr4:38935140-38935317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):54, 92

               
               
               Conread position:98-255
               
               
               Cow position:chr4:51768906-51769068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):45, 92

               
               
               Conread position:1-221
               
               
               Cow position:chr5:53055826-53055607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):57, 100

               
               
               Conread position:1-255
               
               
               Cow position:chr5:28224182-28224444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):60, 86

               
               
               Conread position:1-255
               
               
               Cow position:chr5:54405167-54404901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):58, 37

               
               
               Conread position:4-248
               
               
               Cow position:chr5:4952486-4952743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):55, 208

               
               
               Conread position:4-248
               
               
               Cow position:chr5:65601193-65601440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):55, 21

               
               
               Conread position:4-255
               
               
               Cow position:chr5:50821518-50821772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):55, 117

               
               
               Conread position:4-266
               
               
               Cow position:chr5:42747891-42748158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):55, 26

               
               
               Conread position:4-273
               
               
               Cow position:chr5:16184822-16185094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 21

               
               
               Conread position:5-255
               
               
               Cow position:chr5:45705778-45706035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 203

               
               
               Conread position:6-257
               
               
               Cow position:chr5:44583386-44583138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 65

               
               
               Conread position:7-193
               
               
               Cow position:chr5:53825257-53825440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:7-251
               
               
               Cow position:chr5:52645347-52645093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):28, 184

               
               
               Conread position:7-251
               
               
               Cow position:chr5:53855437-53855684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 75

               
               
               Conread position:7-255
               
               
               Cow position:chr5:42063936-42064193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):52, 123

               
               
               Conread position:7-258
               
               
               Cow position:chr5:43923416-43923165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):52, 201

               
               
               Conread position:7-258
               
               
               Cow position:chr5:55176625-55176883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:201
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):52, 36

               
               
               Conread position:7-258
               
               
               Cow position:chr5:72564491-72564754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):43, 189

               
               
               Conread position:7-259
               
               
               Cow position:chr5:360212-359948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):36, 64

               
               
               Conread position:7-259
               
               
               Cow position:chr5:65887281-65887013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):52, 259

               
               
               Conread position:7-259
               
               
               Cow position:chr5:65933195-65932934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 97

               
               
               Conread position:7-260
               
               
               Cow position:chr5:18573903-18574168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 194

               
               
               Conread position:7-260
               
               
               Cow position:chr5:42845867-42845602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):52, 71

               
               
               Conread position:7-265
               
               
               Cow position:chr5:30816448-30816718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):52, 187

               
               
               Conread position:7-265
               
               
               Cow position:chr5:45226096-45225824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 105

               
               
               Conread position:8-251
               
               
               Cow position:chr5:4218615-4218856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):51, 23

               
               
               Conread position:9-250
               
               
               Cow position:chr5:56467439-56467685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):94, 50

               
               
               Conread position:9-259
               
               
               Cow position:chr5:52165448-52165184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):17, 63

               
               
               Conread position:17-268
               
               
               Cow position:chr5:50729238-50729496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):42, 219

               
               
               Conread position:18-253
               
               
               Cow position:chr5:43474591-43474835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):41, 160

               
               
               Conread position:31-259
               
               
               Cow position:chr5:65776628-65776390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):27, 7

               
               
               Conread position:32-193
               
               
               Cow position:chr5:9498147-9498312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:32-259
               
               
               Cow position:chr5:51999977-52000216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):32, 163

               
               
               Conread position:33-259
               
               
               Cow position:chr5:72903465-72903237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):104, 35

               
               
               Conread position:34-259
               
               
               Cow position:chr5:37646792-37646552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):25, 148

               
               
               Conread position:34-259
               
               
               Cow position:chr5:49685521-49685276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:35-255
               
               
               Cow position:chr5:75437136-75436897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:39-259
               
               
               Cow position:chr5:45036785-45037015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):20, 153

               
               
               Conread position:39-270
               
               
               Cow position:chr5:17063329-17063086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):19, 155

               
               
               Conread position:40-266
               
               
               Cow position:chr5:24996458-24996222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 44

               
               
               Conread position:41-265
               
               
               Cow position:chr5:41164855-41165086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):18, 128

               
               
               Conread position:43-235
               
               
               Cow position:chr5:16938239-16938037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):16, 78

               
               
               Conread position:45-260
               
               
               Cow position:chr5:32697042-32696828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):14, 78

               
               
               Conread position:47-260
               
               
               Cow position:chr5:35235933-35235714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):94, 142

               
               
               Conread position:57-255
               
               
               Cow position:chr5:62027160-62026957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):89, 11

               
               
               Conread position:57-265
               
               
               Cow position:chr5:64137037-64137253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):86, 209

               
               
               Conread position:59-259
               
               
               Cow position:chr5:75230471-75230672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):70, 128

               
               
               Conread position:59-262
               
               
               Cow position:chr5:56518421-56518214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):80, 12

               
               
               Conread position:61-257
               
               
               Cow position:chr5:21964083-21964280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):97, 17

               
               
               Conread position:61-258
               
               
               Cow position:chr5:18898773-18898969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):85, 124

               
               
               Conread position:63-255
               
               
               Cow position:chr5:64758972-64758781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):83, 54

               
               
               Conread position:63-259
               
               
               Cow position:chr5:458273-458485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:64-255
               
               
               Cow position:chr5:44049495-44049690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):73, 190

               
               
               Conread position:68-289
               
               
               Cow position:chr5:35449050-35449282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):75, 121

               
               
               Conread position:75-259
               
               
               Cow position:chr5:62995649-62995839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):64, 24

               
               
               Conread position:87-259
               
               
               Cow position:chr5:17644840-17644661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):49, 102

               
               
               Conread position:112-247
               
               
               Cow position:chr5:41486896-41486757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):25, 75

               
               
               Conread position:1-237
               
               
               Cow position:chr6:6642847-6642614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:1-254
               
               
               Cow position:chr6:54369155-54368898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):58, 24

               
               
               Conread position:1-258
               
               
               Cow position:chr6:16700003-16700272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:205
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):60, 19

               
               
               Conread position:1-259
               
               
               Cow position:chr6:16737762-16738028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):58, 69

               
               
               Conread position:1-260
               
               
               Cow position:chr6:42565427-42565698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 89

               
               
               Conread position:1-265
               
               
               Cow position:chr6:67950702-67950966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 24

               
               
               Conread position:4-259
               
               
               Cow position:chr6:33302154-33302420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:4-270
               
               
               Cow position:chr6:3952269-3952537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):144, 172

               
               
               Conread position:5-260
               
               
               Cow position:chr6:34075772-34076036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 20

               
               
               Conread position:7-221
               
               
               Cow position:chr6:55608059-55607842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:173
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):53, 141

               
               
               Conread position:7-252
               
               
               Cow position:chr6:9008860-9008610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):52, 27

               
               
               Conread position:7-255
               
               
               Cow position:chr6:10332359-10332087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):27, 267

               
               
               Conread position:7-255
               
               
               Cow position:chr6:44078263-44078521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):38, 201

               
               
               Conread position:7-259
               
               
               Cow position:chr6:31635940-31635684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):29, 55

               
               
               Conread position:7-259
               
               
               Cow position:chr6:35103577-35103325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):51, 18

               
               
               Conread position:7-260
               
               
               Cow position:chr6:5958269-5958017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):132, 61

               
               
               Conread position:7-260
               
               
               Cow position:chr6:10176551-10176287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 13

               
               
               Conread position:7-264
               
               
               Cow position:chr6:54365576-54365318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):49, 74

               
               
               Conread position:7-265
               
               
               Cow position:chr6:47540273-47540545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:207
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):52, 181

               
               
               Conread position:7-266
               
               
               Cow position:chr6:35181506-35181246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 179

               
               
               Conread position:8-210
               
               
               Cow position:chr6:54140566-54140769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):129, 33

               
               
               Conread position:13-196
               
               
               Cow position:chr6:12845070-12845255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:156
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):46, 58

               
               
               Conread position:13-253
               
               
               Cow position:chr6:12927873-12928121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):46, 182

               
               
               Conread position:13-255
               
               
               Cow position:chr6:56849771-56850016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:189
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):46, 135

               
               
               Conread position:14-273
               
               
               Cow position:chr6:2423503-2423765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):45, 87

               
               
               Conread position:17-251
               
               
               Cow position:chr6:561373-561624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):11, 199

               
               
               Conread position:19-268
               
               
               Cow position:chr6:7103476-7103210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):33, 258

               
               
               Conread position:23-259
               
               
               Cow position:chr6:6264407-6264649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):36, 48

               
               
               Conread position:29-266
               
               
               Cow position:chr6:29239712-29239955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):30, 160

               
               
               Conread position:32-254
               
               
               Cow position:chr6:4383265-4383488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):27, 46

               
               
               Conread position:32-259
               
               
               Cow position:chr6:68049208-68049440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):27, 39

               
               
               Conread position:33-255
               
               
               Cow position:chr6:38218445-38218673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):26, 149

               
               
               Conread position:33-255
               
               
               Cow position:chr6:45065233-45065012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):25, 104

               
               
               Conread position:33-259
               
               
               Cow position:chr6:6995171-6994946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):58, 153

               
               
               Conread position:33-259
               
               
               Cow position:chr6:17090372-17090607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):104, 35

               
               
               Conread position:33-259
               
               
               Cow position:chr6:38440955-38441184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):26, 115

               
               
               Conread position:33-259
               
               
               Cow position:chr6:66874135-66874358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):26, 90

               
               
               Conread position:33-265
               
               
               Cow position:chr6:49685358-49685598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):25, 142

               
               
               Conread position:33-266
               
               
               Cow position:chr6:52025878-52025637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):31, 24

               
               
               Conread position:34-259
               
               
               Cow position:chr6:14850937-14850706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):30, 23

               
               
               Conread position:35-273
               
               
               Cow position:chr6:19401637-19401882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):24, 111

               
               
               Conread position:40-255
               
               
               Cow position:chr6:35435783-35435996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 109

               
               
               Conread position:43-259
               
               
               Cow position:chr6:48344111-48344340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):16, 153

               
               
               Conread position:45-266
               
               
               Cow position:chr6:30786363-30786140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):14, 147

               
               
               Conread position:46-264
               
               
               Cow position:chr6:65702615-65702391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):13, 86

               
               
               Conread position:48-255
               
               
               Cow position:chr6:57405336-57405119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):11, 37

               
               
               Conread position:50-270
               
               
               Cow position:chr6:54864873-54864650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):87, 18

               
               
               Conread position:51-259
               
               
               Cow position:chr6:53519829-53519614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):90, 128

               
               
               Conread position:57-266
               
               
               Cow position:chr6:38641298-38641509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:165
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):82, 144

               
               
               Conread position:58-255
               
               
               Cow position:chr6:33276840-33277045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):83, 51

               
               
               Conread position:59-288
               
               
               Cow position:chr6:53139127-53138877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:61-177
               
               
               Cow position:chr6:10237175-10237292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:61-196
               
               
               Cow position:chr6:36011499-36011633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):97, 11

               
               
               Conread position:64-259
               
               
               Cow position:chr6:28318216-28318412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):67, 95

               
               
               Conread position:76-256
               
               
               Cow position:chr6:32518054-32517864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:78-259
               
               
               Cow position:chr6:18968952-18968772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):53, 31

               
               
               Conread position:87-259
               
               
               Cow position:chr6:12668937-12669110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):50, 100

               
               
               Conread position:88-260
               
               
               Cow position:chr6:11246595-11246772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 91

               
               
               Conread position:94-254
               
               
               Cow position:chr6:14914402-14914238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:104-244
               
               
               Cow position:chr6:57298867-57299011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):30, 72

               
               
               Conread position:1-221
               
               
               Cow position:chr7:20534625-20534848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):138, 58

               
               
               Conread position:1-241
               
               
               Cow position:chr7:23472078-23471828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):58, 26

               
               
               Conread position:1-247
               
               
               Cow position:chr7:23099290-23099045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):61, 22

               
               
               Conread position:1-254
               
               
               Cow position:chr7:63085308-63085563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):58, 24

               
               
               Conread position:1-255
               
               
               Cow position:chr7:22357745-22357478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:1-255
               
               
               Cow position:chr7:25512378-25512116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):32, 189

               
               
               Conread position:1-255
               
               
               Cow position:chr7:63771646-63771913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):58, 84

               
               
               Conread position:1-260
               
               
               Cow position:chr7:52718898-52718625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):36, 196

               
               
               Conread position:1-266
               
               
               Cow position:chr7:47932053-47931780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:3-255
               
               
               Cow position:chr7:33804723-33804972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):55, 19

               
               
               Conread position:4-230
               
               
               Cow position:chr7:58967021-58967252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):55, 173

               
               
               Conread position:4-282
               
               
               Cow position:chr7:4138974-4138701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):55, 21

               
               
               Conread position:5-179
               
               
               Cow position:chr7:98369-98190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:7-221
               
               
               Cow position:chr7:59030748-59030963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):132, 28

               
               
               Conread position:7-236
               
               
               Cow position:chr7:39105598-39105357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:7-250
               
               
               Cow position:chr7:58170490-58170740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):52, 185

               
               
               Conread position:7-255
               
               
               Cow position:chr7:32824503-32824249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 64

               
               
               Conread position:7-258
               
               
               Cow position:chr7:9136591-9136843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):51, 18

               
               
               Conread position:7-258
               
               
               Cow position:chr7:39149686-39149951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):52, 194

               
               
               Conread position:7-259
               
               
               Cow position:chr7:4418710-4418451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):32, 25

               
               
               Conread position:7-259
               
               
               Cow position:chr7:21649852-21650113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 32

               
               
               Conread position:7-260
               
               
               Cow position:chr7:57259281-57259016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):52, 170

               
               
               Conread position:7-264
               
               
               Cow position:chr7:44590093-44589835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):103, 34

               
               
               Conread position:7-265
               
               
               Cow position:chr7:42431574-42431845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):52, 28

               
               
               Conread position:7-266
               
               
               Cow position:chr7:34428310-34428590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):52, 265

               
               
               Conread position:7-266
               
               
               Cow position:chr7:39042353-39042615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):52, 184

               
               
               Conread position:7-266
               
               
               Cow position:chr7:65122091-65122360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):37, 176

               
               
               Conread position:7-270
               
               
               Cow position:chr7:20415554-20415281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 64

               
               
               Conread position:8-253
               
               
               Cow position:chr7:15654324-15654071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):50, 185

               
               
               Conread position:8-255
               
               
               Cow position:chr7:59713219-59713477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):51, 15

               
               
               Conread position:8-267
               
               
               Cow position:chr7:53361626-53361366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:201
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):51, 182

               
               
               Conread position:9-258
               
               
               Cow position:chr7:27283431-27283692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):49, 6

               
               
               Conread position:12-266
               
               
               Cow position:chr7:3283119-3283382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):125, 45

               
               
               Conread position:12-266
               
               
               Cow position:chr7:52776999-52776739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:201
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):53, 168

               
               
               Conread position:13-264
               
               
               Cow position:chr7:21526650-21526392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):46, 196

               
               
               Conread position:14-255
               
               
               Cow position:chr7:53612900-53613147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):13, 140

               
               
               Conread position:19-237
               
               
               Cow position:chr7:32693289-32693060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):40, 134

               
               
               Conread position:19-260
               
               
               Cow position:chr7:41293988-41293736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):24, 54

               
               
               Conread position:20-266
               
               
               Cow position:chr7:34422499-34422251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):39, 51

               
               
               Conread position:22-260
               
               
               Cow position:chr7:39988173-39988416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:23-259
               
               
               Cow position:chr7:41328266-41328030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):31, 37

               
               
               Conread position:23-259
               
               
               Cow position:chr7:49942657-49942417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):115, 48

               
               
               Conread position:25-175
               
               
               Cow position:chr7:25496511-25496661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):42, 10

               
               
               Conread position:26-259
               
               
               Cow position:chr7:63113002-63112766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):30, 6

               
               
               Conread position:27-264
               
               
               Cow position:chr7:42460203-42460450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):5, 152

               
               
               Conread position:31-258
               
               
               Cow position:chr7:600115-600344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):12, 39

               
               
               Conread position:32-244
               
               
               Cow position:chr7:17782898-17782683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):27, 122

               
               
               Conread position:32-258
               
               
               Cow position:chr7:45658610-45658378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):47, 157

               
               
               Conread position:33-236
               
               
               Cow position:chr7:24767447-24767243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):125, 150

               
               
               Conread position:33-252
               
               
               Cow position:chr7:25860413-25860191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):26, 125

               
               
               Conread position:33-258
               
               
               Cow position:chr7:14712414-14712193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):129, 5

               
               
               Conread position:33-259
               
               
               Cow position:chr7:41445137-41445370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):26, 161

               
               
               Conread position:35-251
               
               
               Cow position:chr7:27349447-27349228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):23, 46

               
               
               Conread position:35-255
               
               
               Cow position:chr7:31881465-31881683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):24, 78

               
               
               Conread position:37-247
               
               
               Cow position:chr7:32791473-32791702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:37-259
               
               
               Cow position:chr7:15855524-15855308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:39-259
               
               
               Cow position:chr7:40726973-40727204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 172

               
               
               Conread position:40-260
               
               
               Cow position:chr7:48020218-48020432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):24, 88

               
               
               Conread position:41-247
               
               
               Cow position:chr7:1558519-1558735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):18, 152

               
               
               Conread position:43-266
               
               
               Cow position:chr7:3311630-3311862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:44-260
               
               
               Cow position:chr7:35286838-35286626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):104, 15

               
               
               Conread position:44-265
               
               
               Cow position:chr7:16022088-16022312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):15, 142

               
               
               Conread position:45-268
               
               
               Cow position:chr7:57161936-57162174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:49-259
               
               
               Cow position:chr7:63946780-63946573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):109, 79

               
               
               Conread position:50-254
               
               
               Cow position:chr7:54479469-54479680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):81, 130

               
               
               Conread position:50-255
               
               
               Cow position:chr7:39094119-39093921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):128, 51

               
               
               Conread position:50-258
               
               
               Cow position:chr7:42894246-42894454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):89, 68

               
               
               Conread position:50-265
               
               
               Cow position:chr7:25263162-25263393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:56-265
               
               
               Cow position:chr7:7142265-7142044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):79, 206

               
               
               Conread position:57-258
               
               
               Cow position:chr7:1761521-1761734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):82, 49

               
               
               Conread position:57-259
               
               
               Cow position:chr7:256005-255803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):91, 14

               
               
               Conread position:57-259
               
               
               Cow position:chr7:38696650-38696858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):74, 109

               
               
               Conread position:57-274
               
               
               Cow position:chr7:40121268-40121490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):53, 112

               
               
               Conread position:58-266
               
               
               Cow position:chr7:67816711-67816920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):6, 128

               
               
               Conread position:59-259
               
               
               Cow position:chr7:54784005-54783809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):143, 89

               
               
               Conread position:61-258
               
               
               Cow position:chr7:32079265-32079459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):76, 123

               
               
               Conread position:62-255
               
               
               Cow position:chr7:64135657-64135458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):79, 125

               
               
               Conread position:62-260
               
               
               Cow position:chr7:13963010-13963215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:64-252
               
               
               Cow position:chr7:39144499-39144689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 123

               
               
               Conread position:80-259
               
               
               Cow position:chr7:32372684-32372870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):59, 98

               
               
               Conread position:91-237
               
               
               Cow position:chr7:1375983-1376129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):67, 83

               
               
               Conread position:135-260
               
               
               Cow position:chr7:58923282-58923409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):23, 49

               
               
               Conread position:1-247
               
               
               Cow position:chr8:43986500-43986245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):58, 221

               
               
               Conread position:1-248
               
               
               Cow position:chr8:47752204-47751944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):58, 24

               
               
               Conread position:1-258
               
               
               Cow position:chr8:30245113-30244856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 67

               
               
               Conread position:1-265
               
               
               Cow position:chr8:642844-642590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 14

               
               
               Conread position:1-270
               
               
               Cow position:chr8:3704333-3704609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 188

               
               
               Conread position:4-255
               
               
               Cow position:chr8:17047047-17046786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):55, 177

               
               
               Conread position:4-259
               
               
               Cow position:chr8:5450868-5450632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):41, 95

               
               
               Conread position:4-266
               
               
               Cow position:chr8:6233183-6232912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 186

               
               
               Conread position:5-255
               
               
               Cow position:chr8:37571988-37571728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):54, 9

               
               
               Conread position:6-247
               
               
               Cow position:chr8:24513421-24513178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 143

               
               
               Conread position:6-260
               
               
               Cow position:chr8:21206603-21206862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):52, 17

               
               
               Conread position:7-227
               
               
               Cow position:chr8:45245296-45245071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 50

               
               
               Conread position:7-247
               
               
               Cow position:chr8:1999345-1999588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):136, 18

               
               
               Conread position:7-247
               
               
               Cow position:chr8:21221919-21222162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):31, 85

               
               
               Conread position:7-247
               
               
               Cow position:chr8:36648735-36648488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):134, 18

               
               
               Conread position:7-253
               
               
               Cow position:chr8:56581481-56581239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:190
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):52, 146

               
               
               Conread position:7-255
               
               
               Cow position:chr8:9517462-9517203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):52, 19

               
               
               Conread position:7-259
               
               
               Cow position:chr8:20306693-20306956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):35, 164

               
               
               Conread position:7-259
               
               
               Cow position:chr8:21827027-21826773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 16

               
               
               Conread position:7-259
               
               
               Cow position:chr8:24471365-24471629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):52, 178

               
               
               Conread position:7-264
               
               
               Cow position:chr8:60454913-60455173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):52, 183

               
               
               Conread position:7-266
               
               
               Cow position:chr8:16938732-16938468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):52, 158

               
               
               Conread position:7-285
               
               
               Cow position:chr8:16297041-16296740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:221
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:8-258
               
               
               Cow position:chr8:6816950-6816692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):61, 17

               
               
               Conread position:8-258
               
               
               Cow position:chr8:42607550-42607300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:9-259
               
               
               Cow position:chr8:48513285-48513028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 14

               
               
               Conread position:10-255
               
               
               Cow position:chr8:47461585-47461844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):49, 171

               
               
               Conread position:12-258
               
               
               Cow position:chr8:21960973-21961226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 70

               
               
               Conread position:13-258
               
               
               Cow position:chr8:57218538-57218783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:15-259
               
               
               Cow position:chr8:9230159-9229902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):133, 56

               
               
               Conread position:18-265
               
               
               Cow position:chr8:18017245-18017503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):121, 30

               
               
               Conread position:24-265
               
               
               Cow position:chr8:53429508-53429759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):35, 56

               
               
               Conread position:27-259
               
               
               Cow position:chr8:21212557-21212782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):132, 14

               
               
               Conread position:32-247
               
               
               Cow position:chr8:34400690-34400912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):27, 89

               
               
               Conread position:32-255
               
               
               Cow position:chr8:44437510-44437741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:180
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):27, 157

               
               
               Conread position:32-272
               
               
               Cow position:chr8:1472804-1473047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):8, 59

               
               
               Conread position:33-251
               
               
               Cow position:chr8:13634107-13634317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):26, 115

               
               
               Conread position:33-255
               
               
               Cow position:chr8:6074053-6073843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):26, 79

               
               
               Conread position:33-260
               
               
               Cow position:chr8:7149938-7149714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):104, 17

               
               
               Conread position:33-264
               
               
               Cow position:chr8:24952078-24952324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):24, 183

               
               
               Conread position:35-266
               
               
               Cow position:chr8:42794564-42794332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 46

               
               
               Conread position:37-289
               
               
               Cow position:chr8:45664522-45664778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 155

               
               
               Conread position:41-255
               
               
               Cow position:chr8:1297268-1297486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):18, 124

               
               
               Conread position:41-265
               
               
               Cow position:chr8:53485458-53485683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):18, 107

               
               
               Conread position:45-260
               
               
               Cow position:chr8:28412856-28412635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):14, 87

               
               
               Conread position:47-261
               
               
               Cow position:chr8:31297027-31297248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):5, 10

               
               
               Conread position:50-254
               
               
               Cow position:chr8:8668434-8668226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):87, 72

               
               
               Conread position:50-259
               
               
               Cow position:chr8:28509728-28509505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:50-266
               
               
               Cow position:chr8:225601-225381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):98, 138

               
               
               Conread position:57-258
               
               
               Cow position:chr8:36464975-36465185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):12, 133

               
               
               Conread position:57-259
               
               
               Cow position:chr8:20683743-20683949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):64, 134

               
               
               Conread position:57-260
               
               
               Cow position:chr8:54305853-54306060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):20, 131

               
               
               Conread position:57-265
               
               
               Cow position:chr8:32295968-32295744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):59, 140

               
               
               Conread position:58-255
               
               
               Cow position:chr8:31646235-31646033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):78, 130

               
               
               Conread position:60-255
               
               
               Cow position:chr8:53929809-53929607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):29, 134

               
               
               Conread position:61-255
               
               
               Cow position:chr8:42575469-42575672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):78, 144

               
               
               Conread position:61-258
               
               
               Cow position:chr8:35504461-35504260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):78, 128

               
               
               Conread position:61-259
               
               
               Cow position:chr8:39555752-39555959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):79, 130

               
               
               Conread position:62-259
               
               
               Cow position:chr8:39592365-39592566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):79, 15

               
               
               Conread position:65-266
               
               
               Cow position:chr8:1327213-1327417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):74, 22

               
               
               Conread position:70-259
               
               
               Cow position:chr8:37147903-37148100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:161
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):73, 121

               
               
               Conread position:99-259
               
               
               Cow position:chr8:61128893-61128717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:102-258
               
               
               Cow position:chr8:35497689-35497852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):57, 82

               
               
               Conread position:1-169
               
               
               Cow position:chr9:3532581-3532754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):58, 120

               
               
               Conread position:1-258
               
               
               Cow position:chr9:28726398-28726659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 89

               
               
               Conread position:1-259
               
               
               Cow position:chr9:1950250-1949980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):44, 63

               
               
               Conread position:1-260
               
               
               Cow position:chr9:1520401-1520678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 80

               
               
               Conread position:1-260
               
               
               Cow position:chr9:34000284-34000562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):42, 26

               
               
               Conread position:1-265
               
               
               Cow position:chr9:29184809-29185078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:205
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):63, 26

               
               
               Conread position:1-266
               
               
               Cow position:chr9:62442609-62442344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):69, 88

               
               
               Conread position:1-274
               
               
               Cow position:chr9:34287117-34286847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):37, 15

               
               
               Conread position:1-278
               
               
               Cow position:chr9:7410110-7409820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 274

               
               
               Conread position:4-238
               
               
               Cow position:chr9:49279776-49279556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):154, 55

               
               
               Conread position:4-253
               
               
               Cow position:chr9:7363360-7363091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:4-259
               
               
               Cow position:chr9:54528840-54528572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:204
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):55, 168

               
               
               Conread position:4-260
               
               
               Cow position:chr9:26057127-26057382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):154, 55

               
               
               Conread position:7-244
               
               
               Cow position:chr9:13205248-13205490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):26, 65

               
               
               Conread position:7-247
               
               
               Cow position:chr9:1984198-1984453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):21, 70

               
               
               Conread position:7-253
               
               
               Cow position:chr9:29841211-29840951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:7-253
               
               
               Cow position:chr9:41680055-41679812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):38, 18

               
               
               Conread position:7-254
               
               
               Cow position:chr9:5393372-5393114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):51, 64

               
               
               Conread position:7-254
               
               
               Cow position:chr9:48106795-48107050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):36, 187

               
               
               Conread position:7-255
               
               
               Cow position:chr9:5594822-5594566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):52, 184

               
               
               Conread position:7-255
               
               
               Cow position:chr9:43871294-43871043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 113

               
               
               Conread position:7-258
               
               
               Cow position:chr9:36445943-36445690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):52, 64

               
               
               Conread position:7-258
               
               
               Cow position:chr9:42498151-42497887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:7-259
               
               
               Cow position:chr9:5246167-5245922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):52, 18

               
               
               Conread position:7-259
               
               
               Cow position:chr9:59172057-59172322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):52, 15

               
               
               Conread position:7-260
               
               
               Cow position:chr9:15215353-15215626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:7-265
               
               
               Cow position:chr9:18162830-18163101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):32, 82

               
               
               Conread position:8-251
               
               
               Cow position:chr9:14974606-14974862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):51, 14

               
               
               Conread position:8-255
               
               
               Cow position:chr9:21888490-21888231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:8-260
               
               
               Cow position:chr9:8998676-8998416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):51, 183

               
               
               Conread position:9-253
               
               
               Cow position:chr9:22114312-22114569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):13, 184

               
               
               Conread position:9-255
               
               
               Cow position:chr9:5501169-5500922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 166

               
               
               Conread position:9-273
               
               
               Cow position:chr9:52407490-52407213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:10-253
               
               
               Cow position:chr9:50080727-50080980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):49, 181

               
               
               Conread position:13-255
               
               
               Cow position:chr9:7634584-7634338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):46, 128

               
               
               Conread position:13-255
               
               
               Cow position:chr9:9723567-9723818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):46, 58

               
               
               Conread position:16-255
               
               
               Cow position:chr9:20960970-20961212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):30, 169

               
               
               Conread position:23-259
               
               
               Cow position:chr9:10011108-10010862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:26-254
               
               
               Cow position:chr9:45170866-45171101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):33, 152

               
               
               Conread position:29-259
               
               
               Cow position:chr9:54716326-54716546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:32-258
               
               
               Cow position:chr9:35305820-35306056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):10, 137

               
               
               Conread position:32-259
               
               
               Cow position:chr9:55084000-55084237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:182
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):27, 162

               
               
               Conread position:33-255
               
               
               Cow position:chr9:58674037-58673804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):26, 87

               
               
               Conread position:34-266
               
               
               Cow position:chr9:55287600-55287838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):63, 11

               
               
               Conread position:38-221
               
               
               Cow position:chr9:34689321-34689503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):21, 82

               
               
               Conread position:41-247
               
               
               Cow position:chr9:11201867-11201665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):15, 77

               
               
               Conread position:47-252
               
               
               Cow position:chr9:41789556-41789352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):91, 12

               
               
               Conread position:50-253
               
               
               Cow position:chr9:9823243-9823439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):17, 81

               
               
               Conread position:50-255
               
               
               Cow position:chr9:8288894-8288682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):21, 138

               
               
               Conread position:50-265
               
               
               Cow position:chr9:5532228-5532002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:58-252
               
               
               Cow position:chr9:33598249-33598048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):85, 130

               
               
               Conread position:58-259
               
               
               Cow position:chr9:9753128-9753332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:163
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):100, 13

               
               
               Conread position:61-254
               
               
               Cow position:chr9:23541153-23541342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):99, 73

               
               
               Conread position:61-255
               
               
               Cow position:chr9:55890076-55889875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):8, 155

               
               
               Conread position:61-255
               
               
               Cow position:chr9:64559622-64559820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):87, 124

               
               
               Conread position:61-259
               
               
               Cow position:chr9:6225187-6225393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):79, 130

               
               
               Conread position:64-251
               
               
               Cow position:chr9:38846087-38846275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):82, 95

               
               
               Conread position:68-253
               
               
               Cow position:chr9:38875316-38875509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):71, 122

               
               
               Conread position:89-258
               
               
               Cow position:chr9:40604187-40604006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:1-247
               
               
               Cow position:chrX:27516261-27516512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 31

               
               
               Conread position:1-250
               
               
               Cow position:chrX:16762500-16762755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 31

               
               
               Conread position:1-255
               
               
               Cow position:chrX:28134077-28134337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:201
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):58, 26

               
               
               Conread position:1-255
               
               
               Cow position:chrX:34238449-34238706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):58, 192

               
               
               Conread position:1-255
               
               
               Cow position:chrX:35224030-35224287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):58, 77

               
               
               Conread position:1-258
               
               
               Cow position:chrX:35041950-35042219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):58, 22

               
               
               Conread position:1-258
               
               
               Cow position:chrX:35681063-35681335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 130

               
               
               Conread position:1-259
               
               
               Cow position:chrX:27446419-27446691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):58, 24

               
               
               Conread position:1-259
               
               
               Cow position:chrX:29289304-29289575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 200

               
               
               Conread position:1-259
               
               
               Cow position:chrX:31294812-31294568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):61, 34

               
               
               Conread position:1-260
               
               
               Cow position:chrX:5872044-5872315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):58, 23

               
               
               Conread position:1-265
               
               
               Cow position:chrX:35609714-35609990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 192

               
               
               Conread position:2-258
               
               
               Cow position:chrX:20751992-20752249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):37, 23

               
               
               Conread position:3-190
               
               
               Cow position:chrX:37102311-37102128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):155, 68

               
               
               Conread position:3-255
               
               
               Cow position:chrX:8925436-8925692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 22

               
               
               Conread position:3-255
               
               
               Cow position:chrX:27509289-27509034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):56, 9

               
               
               Conread position:4-260
               
               
               Cow position:chrX:34441716-34441455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 21

               
               
               Conread position:4-266
               
               
               Cow position:chrX:48195310-48195037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):54, 258

               
               
               Conread position:6-244
               
               
               Cow position:chrX:38967383-38967628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 184

               
               
               Conread position:7-214
               
               
               Cow position:chrX:11844504-11844294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):58, 18

               
               
               Conread position:7-247
               
               
               Cow position:chrX:28847142-28846898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:7-247
               
               
               Cow position:chrX:33466351-33466593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 52

               
               
               Conread position:7-248
               
               
               Cow position:chrX:41790706-41790461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):134, 52

               
               
               Conread position:7-248
               
               
               Cow position:chrX:47967334-47967585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):52, 30

               
               
               Conread position:7-254
               
               
               Cow position:chrX:38094791-38094531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 64

               
               
               Conread position:7-255
               
               
               Cow position:chrX:12115775-12116037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):52, 36

               
               
               Conread position:7-255
               
               
               Cow position:chrX:19188670-19188929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 186

               
               
               Conread position:7-258
               
               
               Cow position:chrX:7351036-7351295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):52, 18

               
               
               Conread position:7-258
               
               
               Cow position:chrX:14599266-14599526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):15, 51

               
               
               Conread position:7-258
               
               
               Cow position:chrX:38439207-38439472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):51, 188

               
               
               Conread position:7-259
               
               
               Cow position:chrX:488224-488487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):49, 64

               
               
               Conread position:7-259
               
               
               Cow position:chrX:1616317-1616049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):45, 192

               
               
               Conread position:7-259
               
               
               Cow position:chrX:11614455-11614695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):52, 100

               
               
               Conread position:7-259
               
               
               Cow position:chrX:34502657-34502917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):57, 18

               
               
               Conread position:7-259
               
               
               Cow position:chrX:34565034-34565276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):151, 12

               
               
               Conread position:7-259
               
               
               Cow position:chrX:41743647-41743907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 64

               
               
               Conread position:7-260
               
               
               Cow position:chrX:47379733-47379472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):52, 124

               
               
               Conread position:7-266
               
               
               Cow position:chrX:33639699-33639975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:7-266
               
               
               Cow position:chrX:42994348-42994615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 105

               
               
               Conread position:9-247
               
               
               Cow position:chrX:9161324-9161568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):53, 189

               
               
               Conread position:11-255
               
               
               Cow position:chrX:46073075-46072829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):58, 30

               
               
               Conread position:12-259
               
               
               Cow position:chrX:37489470-37489718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):46, 27

               
               
               Conread position:13-259
               
               
               Cow position:chrX:14973992-14973745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):90, 112

               
               
               Conread position:14-255
               
               
               Cow position:chrX:20151591-20151841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-250
               
               
               Cow position:chrX:25816150-25815922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):40, 172

               
               
               Conread position:19-255
               
               
               Cow position:chrX:41673849-41674101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):33, 7

               
               
               Conread position:21-265
               
               
               Cow position:chrX:23497915-23497667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 164

               
               
               Conread position:23-259
               
               
               Cow position:chrX:20709822-20710068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:31-259
               
               
               Cow position:chrX:35284375-35284615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):28, 163

               
               
               Conread position:32-254
               
               
               Cow position:chrX:40788962-40789199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):13, 166

               
               
               Conread position:32-255
               
               
               Cow position:chrX:47757170-47756937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):27, 188

               
               
               Conread position:32-258
               
               
               Cow position:chrX:17631043-17630812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):30, 159

               
               
               Conread position:32-258
               
               
               Cow position:chrX:39558591-39558356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):13, 158

               
               
               Conread position:32-259
               
               
               Cow position:chrX:1514645-1514415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:181
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):24, 148

               
               
               Conread position:32-259
               
               
               Cow position:chrX:24259819-24259588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):114, 27

               
               
               Conread position:33-217
               
               
               Cow position:chrX:34543547-34543741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):26, 74

               
               
               Conread position:33-252
               
               
               Cow position:chrX:26625917-26625688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):26, 164

               
               
               Conread position:33-254
               
               
               Cow position:chrX:27394254-27394032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:179
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):26, 153

               
               
               Conread position:33-255
               
               
               Cow position:chrX:16416268-16416499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):26, 48

               
               
               Conread position:34-260
               
               
               Cow position:chrX:45598843-45598606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):24, 139

               
               
               Conread position:35-259
               
               
               Cow position:chrX:27680165-27680390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:181
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):29, 151

               
               
               Conread position:36-259
               
               
               Cow position:chrX:17662834-17662598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):23, 158

               
               
               Conread position:37-266
               
               
               Cow position:chrX:15814861-15815086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):22, 89

               
               
               Conread position:39-259
               
               
               Cow position:chrX:2383255-2383484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 31

               
               
               Conread position:39-265
               
               
               Cow position:chrX:29602064-29601829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):23, 39

               
               
               Conread position:40-259
               
               
               Cow position:chrX:36975716-36975944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):19, 219

               
               
               Conread position:41-252
               
               
               Cow position:chrX:30963104-30962885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):18, 148

               
               
               Conread position:43-255
               
               
               Cow position:chrX:16790067-16789861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):19, 142

               
               
               Conread position:46-273
               
               
               Cow position:chrX:11856202-11856437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):13, 42

               
               
               Conread position:48-153
               
               
               Cow position:chrX:1465962-1466070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:49-273
               
               
               Cow position:chrX:36283124-36283363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:50-259
               
               
               Cow position:chrX:1503119-1503331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):95, 18

               
               
               Conread position:54-260
               
               
               Cow position:chrX:33000686-33000899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):16, 138

               
               
               Conread position:57-259
               
               
               Cow position:chrX:11633465-11633675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):82, 132

               
               
               Conread position:57-265
               
               
               Cow position:chrX:29509657-29509438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:63-252
               
               
               Cow position:chrX:46315588-46315390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):78, 146

               
               
               Conread position:65-259
               
               
               Cow position:chrX:29120851-29121041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):93, 61

               
               
               Conread position:69-266
               
               
               Cow position:chrX:1499468-1499667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):68, 105

               
               
               Conread position:71-254
               
               
               Cow position:chrX:4091448-4091637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):72, 185

               
               
               Conread position:73-258
               
               
               Cow position:chrX:36961438-36961637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:88-255
               
               
               Cow position:chrX:32820847-32821021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):55, 11

               
               
               Conread position:127-265
               
               
               Cow position:chrX:38728600-38728739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):31, 55
Conread position:	1-252
Cow position:	chr1:31934221-31934480 (view UCSC Genome Browser custom track)
Alignm length:	262
Alignm identity:	185
Alignm E-value:	3e-33
Alignm gaps (pig, cow):	58, 189
Conread position:	1-253
Cow position:	chr1:61724315-61724053 (view UCSC Genome Browser custom track)
Alignm length:	265
Alignm identity:	199
Alignm E-value:	2.8026e-45
Alignm gaps (pig, cow):	58, 14
Conread position:	1-254
Cow position:	chr1:42053617-42053363 (view UCSC Genome Browser custom track)
Alignm length:	262
Alignm identity:	199
Alignm E-value:	9.80909e-45
Alignm gaps (pig, cow):	59, 212
Conread position:	1-255
Cow position:	chr1:15311576-15311840 (view UCSC Genome Browser custom track)
Alignm length:	267
Alignm identity:	196
Alignm E-value:	2e-39
Alignm gaps (pig, cow):	55, 191
Conread position:	1-259
Cow position:	chr1:34159543-34159810 (view UCSC Genome Browser custom track)
Alignm length:	273
Alignm identity:	206
Alignm E-value:	2.94273e-44
Alignm gaps (pig, cow):	61, 24
Conread position:	1-261
Cow position:	chr1:56225186-56225444 (view UCSC Genome Browser custom track)
Alignm length:	266
Alignm identity:	205
Alignm E-value:	0
Alignm gaps (pig, cow):	62, 26
Conread position:	4-175
Cow position:	chr1:70828617-70828794 (view UCSC Genome Browser custom track)
Alignm length:	183
Alignm identity:	136
Alignm E-value:	3e-22
Alignm gaps (pig, cow):	24, 86
Conread position:	4-255
Cow position:	chr1:22728759-22729022 (view UCSC Genome Browser custom track)
Alignm length:	268
Alignm identity:	198
Alignm E-value:	2e-38
Alignm gaps (pig, cow):	55, 31
Conread position:	4-264
Cow position:	chr1:48444467-48444213 (view UCSC Genome Browser custom track)
Alignm length:	266
Alignm identity:	201
Alignm E-value:	2.99878e-43
Alignm gaps (pig, cow):	60, 21
Conread position:	5-247
Cow position:	chr1:72012095-72011846 (view UCSC Genome Browser custom track)
Alignm length:	253
Alignm identity:	191
Alignm E-value:	8.00001e-42
Alignm gaps (pig, cow):	28, 70
Conread position:	5-259
Cow position:	chr1:8334-8591 (view UCSC Genome Browser custom track)
Alignm length:	266
Alignm identity:	195
Alignm E-value:	1e-36
Alignm gaps (pig, cow):	54, 185
Conread position:	5-265
Cow position:	chr1:21954509-21954251 (view UCSC Genome Browser custom track)
Alignm length:	269
Alignm identity:	193
Alignm E-value:	3e-34
Alignm gaps (pig, cow):	26, 6
Conread position:	6-260
Cow position:	chr1:5409898-5409638 (view UCSC Genome Browser custom track)
Alignm length:	267
Alignm identity:	185
Alignm E-value:	5e-27
Alignm gaps (pig, cow):	49, 19
Conread position:	7-247
Cow position:	chr1:53595039-53595283 (view UCSC Genome Browser custom track)
Alignm length:	247
Alignm identity:	183
Alignm E-value:	1.99993e-41
Alignm gaps (pig, cow):	52, 203
Conread position:	7-255
Cow position:	chr1:732211-731971 (view UCSC Genome Browser custom track)
Alignm length:	254
Alignm identity:	186
Alignm E-value:	3e-34
Alignm gaps (pig, cow):	52, 139
Conread position:	7-258
Cow position:	chr1:71045465-71045728 (view UCSC Genome Browser custom track)
Alignm length:	267
Alignm identity:	195
Alignm E-value:	4e-37
Alignm gaps (pig, cow):	33, 68
Conread position:	7-259
Cow position:	chr1:63391058-63390796 (view UCSC Genome Browser custom track)
Alignm length:	263
Alignm identity:	196
Alignm E-value:	1.4013e-45
Alignm gaps (pig, cow):	58, 0
Conread position:	7-260
Cow position:	chr1:90868724-90868465 (view UCSC Genome Browser custom track)
Alignm length:	268
Alignm identity:	202
Alignm E-value:	6e-40
Alignm gaps (pig, cow):	36, 115
Conread position:	7-265
Cow position:	chr1:10719776-10719500 (view UCSC Genome Browser custom track)
Alignm length:	278
Alignm identity:	191
Alignm E-value:	1e-25
Alignm gaps (pig, cow):	26, 207
Conread position:	7-266
Cow position:	chr1:21577521-21577789 (view UCSC Genome Browser custom track)
Alignm length:	273
Alignm identity:	194
Alignm E-value:	3e-33
Alignm gaps (pig, cow):	63, 24