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Cow genome map

           
Conread name:
           
rcbl_0644.y1
        

               
Conread position:
               
1-165
               

               
Cow position:
               
chr1:40482481-40482313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
19, 55
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr1:81355781-81355596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr1:74956093-74955911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 112
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chr1:68862962-68863143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
44, 27
               

               
Conread position:
               
1-179
               

               
Cow position:
               
chr1:41056604-41056792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
21, 39
               

               
Conread position:
               
1-179
               

               
Cow position:
               
chr1:72286135-72285954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
85, 56
               

               
Conread position:
               
1-183
               

               
Cow position:
               
chr1:6826367-6826180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chr1:8544-8737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chr1:102266342-102266147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
21, 189
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr1:81582044-81582237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
51, 168
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr1:99609296-99609491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr1:3352772-3352576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
24, 46
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr1:65318504-65318698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
58, 171
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr1:78838720-78838919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
16, 70
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr1:87072619-87072819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
17, 176
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr1:8349387-8349197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
47, 102
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr1:94261464-94261664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
24, 76
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr1:42360204-42360418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:3923867-3923669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
78, 56
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:52039558-52039767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 129
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:71350801-71350596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:94226630-94226424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:97611731-97611526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr1:67919068-67919268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
89, 23
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr1:101866569-101866365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
54, 171
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr1:13637737-13637528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
23, 59
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr1:34159765-34159971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
52, 199
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr1:36998117-36998319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
20, 46
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr1:47658275-47658481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr1:60986915-60987125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr1:81290429-81290641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
18, 56
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr1:81228416-81228193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr1:88397918-88397704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
21, 37
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:11913955-11913735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:18936907-18936696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
20, 77
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:22730667-22730872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
18, 45
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:52488039-52487839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
89, 29
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:54258492-54258708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
46, 146
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:101834745-101834958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
18, 63
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr1:28563645-28563425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
21, 122
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr1:89742074-89741852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
17, 29
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr1:3323793-3324013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
21, 177
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr1:76613205-76612993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
62, 18
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:3815769-3815541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
16, 209
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:100474159-100474378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
18, 201
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr1:90621580-90621358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
24, 33
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr1:88618524-88618743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
8, 38
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr1:10716424-10716645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
14, 68
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr1:33206949-33206734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
20, 45
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr1:6589970-6590182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
92, 36
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr1:101836976-101837192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
78, 48
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr1:26427935-26427695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr1:18780414-18780142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
14, 234
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:77133682-77133946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
53, 28
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr1:85162622-85162318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr1:69264740-69265040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 205
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr1:77892064-77892380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 78
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr1:21835867-21836174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
18, 56
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr1:39069027-39068697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
21, 29
               

               
Conread position:
               
2-175
               

               
Cow position:
               
chr1:4581404-4581220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
2-176
               

               
Cow position:
               
chr1:81868803-81868619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
19, 176
               

               
Conread position:
               
2-189
               

               
Cow position:
               
chr1:41252478-41252286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
20, 96
               

               
Conread position:
               
2-192
               

               
Cow position:
               
chr1:46218503-46218700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
2-196
               

               
Cow position:
               
chr1:5597281-5597080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
20, 69
               

               
Conread position:
               
2-201
               

               
Cow position:
               
chr1:87197744-87197957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
2-204
               

               
Cow position:
               
chr1:7739877-7740084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
53, 21
               

               
Conread position:
               
2-204
               

               
Cow position:
               
chr1:23186872-23186660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
20, 131
               

               
Conread position:
               
2-206
               

               
Cow position:
               
chr1:62036726-62036944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
2-207
               

               
Cow position:
               
chr1:102768113-102768317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
64, 104
               

               
Conread position:
               
3-179
               

               
Cow position:
               
chr1:37309589-37309405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
3-188
               

               
Cow position:
               
chr1:55429033-55428833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
3-196
               

               
Cow position:
               
chr1:5135770-5135580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
90, 9
               

               
Conread position:
               
3-196
               

               
Cow position:
               
chr1:93043947-93044148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
22, 98
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chr1:61742040-61741832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
20, 37
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chr1:78096854-78097063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
3-208
               

               
Cow position:
               
chr1:53308464-53308251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
19, 34
               

               
Conread position:
               
3-244
               

               
Cow position:
               
chr1:68845561-68845312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
16, 101
               

               
Conread position:
               
3-307
               

               
Cow position:
               
chr1:80336321-80336009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
16, 30
               

               
Conread position:
               
3-318
               

               
Cow position:
               
chr1:5023832-5023515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
50, 172
               

               
Conread position:
               
4-202
               

               
Cow position:
               
chr1:29935456-29935251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
18, 36
               

               
Conread position:
               
5-156
               

               
Cow position:
               
chr1:4374405-4374246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
43, 22
               

               
Conread position:
               
5-164
               

               
Cow position:
               
chr1:48444260-48444095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
5-167
               

               
Cow position:
               
chr1:43703341-43703511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
5-170
               

               
Cow position:
               
chr1:45288938-45288766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
58, 38
               

               
Conread position:
               
5-175
               

               
Cow position:
               
chr1:26616141-26615964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
46, 33
               

               
Conread position:
               
5-175
               

               
Cow position:
               
chr1:26702273-26702097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
45, 106
               

               
Conread position:
               
5-175
               

               
Cow position:
               
chr1:44506902-44507083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
5-175
               

               
Cow position:
               
chr1:89349896-89350075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
5-176
               

               
Cow position:
               
chr1:64572447-64572626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 38
               

               
Conread position:
               
5-179
               

               
Cow position:
               
chr1:30189080-30189266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
5-179
               

               
Cow position:
               
chr1:100421766-100421934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
88, 35
               

               
Conread position:
               
5-180
               

               
Cow position:
               
chr1:61542984-61542804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
5-182
               

               
Cow position:
               
chr1:53425109-53425294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
5-183
               

               
Cow position:
               
chr1:77720301-77720131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
5-184
               

               
Cow position:
               
chr1:37726486-37726300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
49, 32
               

               
Conread position:
               
5-184
               

               
Cow position:
               
chr1:69539631-69539810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
83, 38
               

               
Conread position:
               
5-184
               

               
Cow position:
               
chr1:96472379-96472549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
5-184
               

               
Cow position:
               
chr1:97231892-97232079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
47, 30
               

               
Conread position:
               
5-185
               

               
Cow position:
               
chr1:484532-484347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
41, 28
               

               
Conread position:
               
5-185
               

               
Cow position:
               
chr1:35162343-35162530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
5-188
               

               
Cow position:
               
chr1:52052787-52052594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
5-189
               

               
Cow position:
               
chr1:3607744-3607928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
82, 38
               

               
Conread position:
               
5-189
               

               
Cow position:
               
chr1:39418187-39417991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
41, 166
               

               
Conread position:
               
5-189
               

               
Cow position:
               
chr1:54478258-54478453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
5-189
               

               
Cow position:
               
chr1:56229179-56229363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
83, 32
               

               
Conread position:
               
5-189
               

               
Cow position:
               
chr1:92996962-92996767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
43, 21
               

               
Conread position:
               
5-190
               

               
Cow position:
               
chr1:75933206-75933390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 60
               

               
Conread position:
               
5-193
               

               
Cow position:
               
chr1:68676295-68676490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
54, 38
               

               
Conread position:
               
5-194
               

               
Cow position:
               
chr1:101632405-101632207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
5-195
               

               
Cow position:
               
chr1:56477521-56477722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
5-195
               

               
Cow position:
               
chr1:72011875-72011683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
88, 40
               

               
Conread position:
               
5-195
               

               
Cow position:
               
chr1:100551903-100552105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
5-196
               

               
Cow position:
               
chr1:28176943-28177135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
48, 89
               

               
Conread position:
               
5-196
               

               
Cow position:
               
chr1:47790732-47790535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
43, 140
               

               
Conread position:
               
5-196
               

               
Cow position:
               
chr1:51417706-51417900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
58, 38
               

               
Conread position:
               
5-196
               

               
Cow position:
               
chr1:71119450-71119650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 157
               

               
Conread position:
               
5-196
               

               
Cow position:
               
chr1:90976151-90975956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
88, 38
               

               
Conread position:
               
5-196
               

               
Cow position:
               
chr1:96558901-96558718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
82, 43
               

               
Conread position:
               
5-196
               

               
Cow position:
               
chr1:97696676-97696875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
16, 12
               

               
Conread position:
               
5-196
               

               
Cow position:
               
chr1:100569088-100569287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
5-197
               

               
Cow position:
               
chr1:1956400-1956203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
16, 12
               

               
Conread position:
               
5-197
               

               
Cow position:
               
chr1:42541531-42541729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
54, 189
               

               
Conread position:
               
5-197
               

               
Cow position:
               
chr1:68817865-68817667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
5-197
               

               
Cow position:
               
chr1:84812009-84811808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
38, 183
               

               
Conread position:
               
5-197
               

               
Cow position:
               
chr1:98583691-98583885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
88, 50
               

               
Conread position:
               
5-198
               

               
Cow position:
               
chr1:22525809-22526012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
5-198
               

               
Cow position:
               
chr1:24534320-24534123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
58, 38
               

               
Conread position:
               
5-198
               

               
Cow position:
               
chr1:34686124-34686309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
58, 34
               

               
Conread position:
               
5-198
               

               
Cow position:
               
chr1:45223513-45223714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
5-198
               

               
Cow position:
               
chr1:80422214-80422405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
57, 38
               

               
Conread position:
               
5-198
               

               
Cow position:
               
chr1:91066219-91066019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
41, 125
               

               
Conread position:
               
5-198
               

               
Cow position:
               
chr1:91874975-91874784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
43, 33
               

               
Conread position:
               
5-198
               

               
Cow position:
               
chr1:100817489-100817675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 96
               

               
Conread position:
               
5-200
               

               
Cow position:
               
chr1:93528632-93528836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
5-200
               

               
Cow position:
               
chr1:97794615-97794418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
58, 107
               

               
Conread position:
               
5-201
               

               
Cow position:
               
chr1:24133125-24132926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 22
               

               
Conread position:
               
5-201
               

               
Cow position:
               
chr1:25383597-25383806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
36, 83
               

               
Conread position:
               
5-201
               

               
Cow position:
               
chr1:34771570-34771367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
48, 18
               

               
Conread position:
               
5-201
               

               
Cow position:
               
chr1:41696992-41697190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
34, 54
               

               
Conread position:
               
5-201
               

               
Cow position:
               
chr1:46030893-46031094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
44, 31
               

               
Conread position:
               
5-201
               

               
Cow position:
               
chr1:62519292-62519499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
5-201
               

               
Cow position:
               
chr1:71079024-71078825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
43, 55
               

               
Conread position:
               
5-201
               

               
Cow position:
               
chr1:88913252-88913457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
47, 33
               

               
Conread position:
               
5-201
               

               
Cow position:
               
chr1:93554772-93554972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
5-202
               

               
Cow position:
               
chr1:53520846-53521052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
5-202
               

               
Cow position:
               
chr1:69695058-69694857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
48, 180
               

               
Conread position:
               
5-202
               

               
Cow position:
               
chr1:78697836-78697634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
48, 67
               

               
Conread position:
               
5-204
               

               
Cow position:
               
chr1:6941397-6941608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
85, 38
               

               
Conread position:
               
5-204
               

               
Cow position:
               
chr1:10942164-10941956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
50, 151
               

               
Conread position:
               
5-204
               

               
Cow position:
               
chr1:10964222-10964430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
50, 151
               

               
Conread position:
               
5-204
               

               
Cow position:
               
chr1:13548050-13547838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
58, 32
               

               
Conread position:
               
5-204
               

               
Cow position:
               
chr1:31934446-31934646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
88, 39
               

               
Conread position:
               
5-204
               

               
Cow position:
               
chr1:43505458-43505666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
33, 197
               

               
Conread position:
               
5-204
               

               
Cow position:
               
chr1:86073529-86073735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
48, 21
               

               
Conread position:
               
5-205
               

               
Cow position:
               
chr1:874584-874794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
5-205
               

               
Cow position:
               
chr1:42545852-42545639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
5-205
               

               
Cow position:
               
chr1:51394349-51394557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 178
               

               
Conread position:
               
5-205
               

               
Cow position:
               
chr1:96081414-96081618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
42, 142
               

               
Conread position:
               
5-206
               

               
Cow position:
               
chr1:45555298-45555506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
44, 33
               

               
Conread position:
               
5-207
               

               
Cow position:
               
chr1:1877963-1878162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
50, 33
               

               
Conread position:
               
5-207
               

               
Cow position:
               
chr1:25734802-25735010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
58, 33
               

               
Conread position:
               
5-207
               

               
Cow position:
               
chr1:38278098-38277887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
17, 10
               

               
Conread position:
               
5-207
               

               
Cow position:
               
chr1:43352724-43352514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
5-207
               

               
Cow position:
               
chr1:49433327-49433122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
86, 38
               

               
Conread position:
               
5-207
               

               
Cow position:
               
chr1:78857388-78857187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
88, 45
               

               
Conread position:
               
5-208
               

               
Cow position:
               
chr1:20667808-20667602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
46, 168
               

               
Conread position:
               
5-208
               

               
Cow position:
               
chr1:98511862-98512069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
46, 162
               

               
Conread position:
               
5-209
               

               
Cow position:
               
chr1:30983557-30983353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
54, 37
               

               
Conread position:
               
5-209
               

               
Cow position:
               
chr1:38418962-38419167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
38, 8
               

               
Conread position:
               
5-209
               

               
Cow position:
               
chr1:72813548-72813758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
41, 194
               

               
Conread position:
               
5-212
               

               
Cow position:
               
chr1:65103553-65103761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
50, 19
               

               
Conread position:
               
5-213
               

               
Cow position:
               
chr1:186343-186133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
50, 126
               

               
Conread position:
               
5-213
               

               
Cow position:
               
chr1:84239179-84238975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 94
               

               
Conread position:
               
5-214
               

               
Cow position:
               
chr1:53458630-53458840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
46, 33
               

               
Conread position:
               
5-214
               

               
Cow position:
               
chr1:78809814-78810024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
86, 38
               

               
Conread position:
               
5-215
               

               
Cow position:
               
chr1:4032562-4032780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
49, 208
               

               
Conread position:
               
5-215
               

               
Cow position:
               
chr1:75250045-75250258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
41, 105
               

               
Conread position:
               
5-217
               

               
Cow position:
               
chr1:7971349-7971564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
81, 38
               

               
Conread position:
               
5-217
               

               
Cow position:
               
chr1:97938903-97939109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
105, 39
               

               
Conread position:
               
5-217
               

               
Cow position:
               
chr1:100706067-100706277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
100, 90
               

               
Conread position:
               
5-219
               

               
Cow position:
               
chr1:68763749-68763536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
58, 21
               

               
Conread position:
               
5-220
               

               
Cow position:
               
chr1:79165151-79164940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
43, 145
               

               
Conread position:
               
5-221
               

               
Cow position:
               
chr1:81913221-81913001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
44, 136
               

               
Conread position:
               
5-223
               

               
Cow position:
               
chr1:6972463-6972685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
88, 50
               

               
Conread position:
               
5-230
               

               
Cow position:
               
chr1:93810363-93810594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
5-231
               

               
Cow position:
               
chr1:50931043-50930810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
46, 110
               

               
Conread position:
               
5-231
               

               
Cow position:
               
chr1:87936833-87937062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
47, 154
               

               
Conread position:
               
5-234
               

               
Cow position:
               
chr1:39510121-39509887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
88, 33
               

               
Conread position:
               
5-237
               

               
Cow position:
               
chr1:90868507-90868275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
43, 163
               

               
Conread position:
               
5-244
               

               
Cow position:
               
chr1:76470589-76470822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
47, 118
               

               
Conread position:
               
5-245
               

               
Cow position:
               
chr1:43822334-43822578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
19, 11
               

               
Conread position:
               
5-280
               

               
Cow position:
               
chr1:84240826-84241102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
48, 90
               

               
Conread position:
               
5-285
               

               
Cow position:
               
chr1:52994954-52995241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
44, 198
               

               
Conread position:
               
5-292
               

               
Cow position:
               
chr1:21460803-21461117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
35, 115
               

               
Conread position:
               
5-295
               

               
Cow position:
               
chr1:82884456-82884180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
88, 57
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr1:48769737-48770051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
41, 59
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr1:65909461-65909745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 38
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr1:98594506-98594792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 87
               

               
Conread position:
               
5-301
               

               
Cow position:
               
chr1:57297410-57297710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
43, 158
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr1:11226311-11226024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
58, 32
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr1:74832360-74832633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
88, 19
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr1:81580103-81580415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 246
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr1:83747874-83748173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
41, 22
               

               
Conread position:
               
5-307
               

               
Cow position:
               
chr1:50991868-50992167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
38, 22
               

               
Conread position:
               
5-309
               

               
Cow position:
               
chr1:77683291-77683584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 38
               

               
Conread position:
               
5-310
               

               
Cow position:
               
chr1:40207187-40206876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
54, 38
               

               
Conread position:
               
5-310
               

               
Cow position:
               
chr1:52956187-52956491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
39, 112
               

               
Conread position:
               
5-310
               

               
Cow position:
               
chr1:63434872-63434558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
38, 175
               

               
Conread position:
               
5-310
               

               
Cow position:
               
chr1:78068131-78067839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 45
               

               
Conread position:
               
5-310
               

               
Cow position:
               
chr1:98461221-98461526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
45, 21
               

               
Conread position:
               
5-311
               

               
Cow position:
               
chr1:53671807-53671517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
38, 56
               

               
Conread position:
               
5-311
               

               
Cow position:
               
chr1:92684758-92684469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
79, 52
               

               
Conread position:
               
5-311
               

               
Cow position:
               
chr1:95153153-95153457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 86
               

               
Conread position:
               
5-314
               

               
Cow position:
               
chr1:58036952-58037274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
54, 281
               

               
Conread position:
               
5-319
               

               
Cow position:
               
chr1:68672666-68672348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 110
               

               
Conread position:
               
6-183
               

               
Cow position:
               
chr1:19515680-19515501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
85, 40
               

               
Conread position:
               
6-188
               

               
Cow position:
               
chr1:91811716-91811902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
46, 37
               

               
Conread position:
               
6-206
               

               
Cow position:
               
chr1:53374366-53374568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
43, 71
               

               
Conread position:
               
6-208
               

               
Cow position:
               
chr1:56225722-56225925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
21, 52
               

               
Conread position:
               
6-209
               

               
Cow position:
               
chr1:55357350-55357152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
6-288
               

               
Cow position:
               
chr1:48730895-48730619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 178
               

               
Conread position:
               
6-298
               

               
Cow position:
               
chr1:45553309-45553012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
37, 191
               

               
Conread position:
               
6-308
               

               
Cow position:
               
chr1:98575980-98576282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 193
               

               
Conread position:
               
7-161
               

               
Cow position:
               
chr1:26729652-26729810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
56, 125
               

               
Conread position:
               
7-185
               

               
Cow position:
               
chr1:235819-235642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
43, 60
               

               
Conread position:
               
7-187
               

               
Cow position:
               
chr1:3965775-3965955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
86, 50
               

               
Conread position:
               
7-188
               

               
Cow position:
               
chr1:96019169-96019351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
52, 30
               

               
Conread position:
               
7-189
               

               
Cow position:
               
chr1:24406958-24406773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
86, 46
               

               
Conread position:
               
7-189
               

               
Cow position:
               
chr1:79844402-79844589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
31, 46
               

               
Conread position:
               
7-194
               

               
Cow position:
               
chr1:102753788-102753987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
47, 36
               

               
Conread position:
               
7-195
               

               
Cow position:
               
chr1:96599345-96599157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
94, 38
               

               
Conread position:
               
7-196
               

               
Cow position:
               
chr1:73960641-73960831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
34, 56
               

               
Conread position:
               
7-198
               

               
Cow position:
               
chr1:78794289-78794098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
86, 31
               

               
Conread position:
               
7-202
               

               
Cow position:
               
chr1:95176871-95177075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
39, 124
               

               
Conread position:
               
7-204
               

               
Cow position:
               
chr1:59518854-59519053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 92
               

               
Conread position:
               
7-204
               

               
Cow position:
               
chr1:76019760-76019555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
52, 131
               

               
Conread position:
               
7-231
               

               
Cow position:
               
chr1:6240343-6240117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
44, 148
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:37886874-37886582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
36, 92
               

               
Conread position:
               
8-309
               

               
Cow position:
               
chr1:71253616-71253324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
51, 30
               

               
Conread position:
               
11-201
               

               
Cow position:
               
chr1:54156794-54156597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
11-231
               

               
Cow position:
               
chr1:76436430-76436646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
82, 32
               

               
Conread position:
               
12-172
               

               
Cow position:
               
chr1:75141938-75142104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
12-194
               

               
Cow position:
               
chr1:52662234-52662045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 72
               

               
Conread position:
               
12-197
               

               
Cow position:
               
chr1:10778505-10778695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
10, 47
               

               
Conread position:
               
12-197
               

               
Cow position:
               
chr1:43312092-43311899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
12-198
               

               
Cow position:
               
chr1:15547412-15547603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
40, 31
               

               
Conread position:
               
12-201
               

               
Cow position:
               
chr1:100852657-100852845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 18
               

               
Conread position:
               
12-209
               

               
Cow position:
               
chr1:88359819-88360024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
13-176
               

               
Cow position:
               
chr1:21560955-21561123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
10, 27
               

               
Conread position:
               
13-186
               

               
Cow position:
               
chr1:72141516-72141692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
46, 143
               

               
Conread position:
               
13-197
               

               
Cow position:
               
chr1:46764813-46765009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
9, 155
               

               
Conread position:
               
13-207
               

               
Cow position:
               
chr1:64804162-64803958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
36, 6
               

               
Conread position:
               
13-209
               

               
Cow position:
               
chr1:52912956-52912754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
33, 6
               

               
Conread position:
               
13-222
               

               
Cow position:
               
chr1:81613327-81613547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
15, 193
               

               
Conread position:
               
13-235
               

               
Cow position:
               
chr1:30418100-30417879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
17, 75
               

               
Conread position:
               
14-187
               

               
Cow position:
               
chr1:59147403-59147223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 12
               

               
Conread position:
               
14-201
               

               
Cow position:
               
chr1:31819051-31819242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
32, 101
               

               
Conread position:
               
15-176
               

               
Cow position:
               
chr1:101792173-101792010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
48, 22
               

               
Conread position:
               
15-198
               

               
Cow position:
               
chr1:84768936-84768746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
15-207
               

               
Cow position:
               
chr1:70422249-70422446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
38, 56
               

               
Conread position:
               
15-207
               

               
Cow position:
               
chr1:73545964-73545769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
23, 74
               

               
Conread position:
               
15-222
               

               
Cow position:
               
chr1:77880794-77880578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
31, 88
               

               
Conread position:
               
15-223
               

               
Cow position:
               
chr1:24778044-24777839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
7, 36
               

               
Conread position:
               
15-311
               

               
Cow position:
               
chr1:30862468-30862179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
33, 102
               

               
Conread position:
               
17-201
               

               
Cow position:
               
chr1:34300604-34300415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
34, 47
               

               
Conread position:
               
17-304
               

               
Cow position:
               
chr1:16962063-16961789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
36, 26
               

               
Conread position:
               
19-197
               

               
Cow position:
               
chr1:95974342-95974531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
29, 173
               

               
Conread position:
               
19-212
               

               
Cow position:
               
chr1:500120-500322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
19-237
               

               
Cow position:
               
chr1:68127238-68127021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
72, 31
               

               
Conread position:
               
20-179
               

               
Cow position:
               
chr1:95215232-95215076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
68, 23
               

               
Conread position:
               
20-184
               

               
Cow position:
               
chr1:62235499-62235328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 97
               

               
Conread position:
               
20-186
               

               
Cow position:
               
chr1:42138805-42138979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
20-189
               

               
Cow position:
               
chr1:4027816-4027987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
73, 22
               

               
Conread position:
               
20-189
               

               
Cow position:
               
chr1:43855250-43855418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
28, 75
               

               
Conread position:
               
20-189
               

               
Cow position:
               
chr1:47886537-47886356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
20-189
               

               
Cow position:
               
chr1:82880593-82880768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
20-190
               

               
Cow position:
               
chr1:6394507-6394682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
20-195
               

               
Cow position:
               
chr1:68826956-68826782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 74
               

               
Conread position:
               
20-196
               

               
Cow position:
               
chr1:16767134-16766958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
29, 75
               

               
Conread position:
               
20-196
               

               
Cow position:
               
chr1:77739664-77739852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
13, 158
               

               
Conread position:
               
20-197
               

               
Cow position:
               
chr1:82942235-82942412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
45, 23
               

               
Conread position:
               
20-197
               

               
Cow position:
               
chr1:82944323-82944146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
45, 23
               

               
Conread position:
               
20-198
               

               
Cow position:
               
chr1:3137878-3138046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
20-200
               

               
Cow position:
               
chr1:42868989-42868803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
28, 77
               

               
Conread position:
               
20-200
               

               
Cow position:
               
chr1:101507306-101507494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
7, 24
               

               
Conread position:
               
20-201
               

               
Cow position:
               
chr1:1499743-1499557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 17
               

               
Conread position:
               
20-201
               

               
Cow position:
               
chr1:19885330-19885517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
23, 96
               

               
Conread position:
               
20-201
               

               
Cow position:
               
chr1:26895029-26894836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
35, 23
               

               
Conread position:
               
20-201
               

               
Cow position:
               
chr1:57089735-57089545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
31, 143
               

               
Conread position:
               
20-201
               

               
Cow position:
               
chr1:57420778-57420600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
73, 23
               

               
Conread position:
               
20-201
               

               
Cow position:
               
chr1:72034975-72034787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
38, 23
               

               
Conread position:
               
20-204
               

               
Cow position:
               
chr1:72105360-72105545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
25, 61
               

               
Conread position:
               
20-207
               

               
Cow position:
               
chr1:34856682-34856486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
20-207
               

               
Cow position:
               
chr1:72068890-72068692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
20-207
               

               
Cow position:
               
chr1:79660453-79660260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
22, 45
               

               
Conread position:
               
20-207
               

               
Cow position:
               
chr1:101268059-101267862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
20-209
               

               
Cow position:
               
chr1:48581080-48581269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
26, 38
               

               
Conread position:
               
20-209
               

               
Cow position:
               
chr1:53370030-53370225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
29, 180
               

               
Conread position:
               
20-213
               

               
Cow position:
               
chr1:86578908-86579111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
24, 100
               

               
Conread position:
               
20-214
               

               
Cow position:
               
chr1:61846094-61846292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
35, 17
               

               
Conread position:
               
20-218
               

               
Cow position:
               
chr1:36613304-36613102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
42, 22
               

               
Conread position:
               
20-223
               

               
Cow position:
               
chr1:86062034-86061833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
121, 71
               

               
Conread position:
               
20-227
               

               
Cow position:
               
chr1:45670585-45670791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
39, 6
               

               
Conread position:
               
20-231
               

               
Cow position:
               
chr1:22035557-22035778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
20-304
               

               
Cow position:
               
chr1:8624501-8624222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
43, 23
               

               
Conread position:
               
20-304
               

               
Cow position:
               
chr1:45007413-45007717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
43, 18
               

               
Conread position:
               
20-311
               

               
Cow position:
               
chr1:68245359-68245064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
52, 23
               

               
Conread position:
               
20-311
               

               
Cow position:
               
chr1:99221406-99221132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
26, 91
               

               
Conread position:
               
20-313
               

               
Cow position:
               
chr1:8347072-8347367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 23
               

               
Conread position:
               
21-196
               

               
Cow position:
               
chr1:4291110-4291295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
27, 100
               

               
Conread position:
               
21-204
               

               
Cow position:
               
chr1:74927832-74928023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
21-205
               

               
Cow position:
               
chr1:2971860-2972057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
21-207
               

               
Cow position:
               
chr1:49082690-49082885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
21-310
               

               
Cow position:
               
chr1:36932107-36932407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
38, 22
               

               
Conread position:
               
22-190
               

               
Cow position:
               
chr1:89076678-89076508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
71, 36
               

               
Conread position:
               
22-204
               

               
Cow position:
               
chr1:81481434-81481243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
22-207
               

               
Cow position:
               
chr1:22823853-22824048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
22-209
               

               
Cow position:
               
chr1:85550127-85549934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
37, 21
               

               
Conread position:
               
22-215
               

               
Cow position:
               
chr1:48214211-48214008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 100
               

               
Conread position:
               
22-303
               

               
Cow position:
               
chr1:83582985-83582686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
23-188
               

               
Cow position:
               
chr1:102504527-102504694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
39, 70
               

               
Conread position:
               
24-176
               

               
Cow position:
               
chr1:83887-84033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
24-178
               

               
Cow position:
               
chr1:66430250-66430404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
69, 19
               

               
Conread position:
               
24-201
               

               
Cow position:
               
chr1:84203465-84203647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
19, 134
               

               
Conread position:
               
25-200
               

               
Cow position:
               
chr1:60044939-60045121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
30, 151
               

               
Conread position:
               
25-204
               

               
Cow position:
               
chr1:11729135-11729314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
63, 18
               

               
Conread position:
               
26-207
               

               
Cow position:
               
chr1:21955417-21955233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 12
               

               
Conread position:
               
27-183
               

               
Cow position:
               
chr1:92590150-92590310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
25, 82
               

               
Conread position:
               
28-204
               

               
Cow position:
               
chr1:32001352-32001180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
153, 18
               

               
Conread position:
               
32-198
               

               
Cow position:
               
chr1:36874996-36875159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
62, 14
               

               
Conread position:
               
32-198
               

               
Cow position:
               
chr1:63530521-63530693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
32-299
               

               
Cow position:
               
chr1:8670732-8670988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
20, 156
               

               
Conread position:
               
33-196
               

               
Cow position:
               
chr1:95835836-95835667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
34-198
               

               
Cow position:
               
chr1:17055957-17056122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
13, 80
               

               
Conread position:
               
35-195
               

               
Cow position:
               
chr1:89381243-89381405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
58, 26
               

               
Conread position:
               
36-208
               

               
Cow position:
               
chr1:49980678-49980854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
57, 21
               

               
Conread position:
               
36-208
               

               
Cow position:
               
chr1:98413738-98413913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
11, 149
               

               
Conread position:
               
36-213
               

               
Cow position:
               
chr1:9143688-9143866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
16, 70
               

               
Conread position:
               
36-311
               

               
Cow position:
               
chr1:28470794-28471078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
57, 29
               

               
Conread position:
               
37-194
               

               
Cow position:
               
chr1:102349778-102349623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
54, 71
               

               
Conread position:
               
37-198
               

               
Cow position:
               
chr1:61884882-61885044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
56, 25
               

               
Conread position:
               
37-204
               

               
Cow position:
               
chr1:15333861-15334030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
22, 70
               

               
Conread position:
               
37-207
               

               
Cow position:
               
chr1:87095247-87095072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
37-208
               

               
Cow position:
               
chr1:48206565-48206391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 58
               

               
Conread position:
               
37-209
               

               
Cow position:
               
chr1:102468651-102468475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
26, 159
               

               
Conread position:
               
38-192
               

               
Cow position:
               
chr1:47402498-47402655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
53, 17
               

               
Conread position:
               
38-207
               

               
Cow position:
               
chr1:53402753-53402923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
50, 22
               

               
Conread position:
               
38-207
               

               
Cow position:
               
chr1:67529024-67529197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
38-207
               

               
Cow position:
               
chr1:79718777-79718947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
24, 58
               

               
Conread position:
               
38-217
               

               
Cow position:
               
chr1:5751284-5751463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
55, 18
               

               
Conread position:
               
38-304
               

               
Cow position:
               
chr1:89342016-89341750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
45, 17
               

               
Conread position:
               
39-192
               

               
Cow position:
               
chr1:5637090-5636930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
39-196
               

               
Cow position:
               
chr1:79087890-79087728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
54, 18
               

               
Conread position:
               
39-201
               

               
Cow position:
               
chr1:89448871-89449035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
54, 25
               

               
Conread position:
               
39-209
               

               
Cow position:
               
chr1:98897723-98897549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
51, 18
               

               
Conread position:
               
39-220
               

               
Cow position:
               
chr1:86340494-86340312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
71, 54
               

               
Conread position:
               
39-309
               

               
Cow position:
               
chr1:64328890-64329142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
9, 68
               

               
Conread position:
               
40-178
               

               
Cow position:
               
chr1:97144495-97144353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
15, 74
               

               
Conread position:
               
40-194
               

               
Cow position:
               
chr1:73936175-73936015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
40-200
               

               
Cow position:
               
chr1:75382949-75383105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
19, 68
               

               
Conread position:
               
40-287
               

               
Cow position:
               
chr1:98708607-98708836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
40-303
               

               
Cow position:
               
chr1:40531128-40530881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
71, 17
               

               
Conread position:
               
41-201
               

               
Cow position:
               
chr1:73721332-73721497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
52, 135
               

               
Conread position:
               
41-214
               

               
Cow position:
               
chr1:101177484-101177662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
18, 103
               

               
Conread position:
               
41-223
               

               
Cow position:
               
chr1:54157267-54157456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
48, 16
               

               
Conread position:
               
42-171
               

               
Cow position:
               
chr1:102346062-102345929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 15
               

               
Conread position:
               
42-201
               

               
Cow position:
               
chr1:84104087-84103925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
48, 20
               

               
Conread position:
               
42-202
               

               
Cow position:
               
chr1:71916146-71915983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
42-207
               

               
Cow position:
               
chr1:72422434-72422267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
37, 23
               

               
Conread position:
               
43-207
               

               
Cow position:
               
chr1:100823012-100823179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
43-304
               

               
Cow position:
               
chr1:46100868-46100594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
12, 23
               

               
Conread position:
               
44-229
               

               
Cow position:
               
chr1:55229951-55230139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
39, 165
               

               
Conread position:
               
44-310
               

               
Cow position:
               
chr1:85712415-85712673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 6
               

               
Conread position:
               
45-194
               

               
Cow position:
               
chr1:38706878-38706726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
48, 139
               

               
Conread position:
               
45-199
               

               
Cow position:
               
chr1:43872343-43872188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
41, 81
               

               
Conread position:
               
45-201
               

               
Cow position:
               
chr1:81569051-81568892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 19
               

               
Conread position:
               
46-188
               

               
Cow position:
               
chr1:102648255-102648401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
46-207
               

               
Cow position:
               
chr1:52496750-52496912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 16
               

               
Conread position:
               
47-189
               

               
Cow position:
               
chr1:66752651-66752505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
47-196
               

               
Cow position:
               
chr1:55753236-55753085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 15
               

               
Conread position:
               
47-201
               

               
Cow position:
               
chr1:95618620-95618778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
48-207
               

               
Cow position:
               
chr1:73020682-73020520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
42, 14
               

               
Conread position:
               
50-188
               

               
Cow position:
               
chr1:74082000-74081859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
37, 134
               

               
Conread position:
               
50-188
               

               
Cow position:
               
chr1:96184008-96183862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
50-195
               

               
Cow position:
               
chr1:43311791-43311641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
50-201
               

               
Cow position:
               
chr1:852151-852306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
50-201
               

               
Cow position:
               
chr1:2462363-2462513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
5, 44
               

               
Conread position:
               
50-209
               

               
Cow position:
               
chr1:20125776-20125934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
12, 38
               

               
Conread position:
               
50-210
               

               
Cow position:
               
chr1:76739927-76739765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
40, 9
               

               
Conread position:
               
50-311
               

               
Cow position:
               
chr1:42537341-42537089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
43, 12
               

               
Conread position:
               
50-316
               

               
Cow position:
               
chr1:45478878-45478629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
43, 55
               

               
Conread position:
               
51-189
               

               
Cow position:
               
chr1:3914936-3914795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 54
               

               
Conread position:
               
51-204
               

               
Cow position:
               
chr1:41027057-41027214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
52-188
               

               
Cow position:
               
chr1:45315652-45315513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 12
               

               
Conread position:
               
52-193
               

               
Cow position:
               
chr1:6790758-6790899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 75
               

               
Conread position:
               
54-207
               

               
Cow position:
               
chr1:95152856-95153013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
56-207
               

               
Cow position:
               
chr1:8287643-8287491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
37, 108
               

               
Conread position:
               
57-179
               

               
Cow position:
               
chr1:24561521-24561395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
57-179
               

               
Cow position:
               
chr1:24570959-24570833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
57-188
               

               
Cow position:
               
chr1:61011169-61011304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
57-198
               

               
Cow position:
               
chr1:56711611-56711468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
36, 48
               

               
Conread position:
               
57-201
               

               
Cow position:
               
chr1:6731169-6731316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
34, 12
               

               
Conread position:
               
57-204
               

               
Cow position:
               
chr1:242545-242694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
36, 138
               

               
Conread position:
               
57-204
               

               
Cow position:
               
chr1:51860573-51860422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
57-209
               

               
Cow position:
               
chr1:65881795-65881951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
33, 75
               

               
Conread position:
               
57-214
               

               
Cow position:
               
chr1:6381760-6381916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
34, 100
               

               
Conread position:
               
57-214
               

               
Cow position:
               
chr1:76735490-76735334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
31, 55
               

               
Conread position:
               
57-230
               

               
Cow position:
               
chr1:81809150-81808976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
33, 150
               

               
Conread position:
               
57-301
               

               
Cow position:
               
chr1:59659546-59659296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
36, 60
               

               
Conread position:
               
57-310
               

               
Cow position:
               
chr1:98683862-98684111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
36, 66
               

               
Conread position:
               
57-311
               

               
Cow position:
               
chr1:17317368-17317131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
58-189
               

               
Cow position:
               
chr1:65638904-65639034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
52, 11
               

               
Conread position:
               
58-192
               

               
Cow position:
               
chr1:5006151-5006286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 64
               

               
Conread position:
               
58-196
               

               
Cow position:
               
chr1:63078999-63079138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 63
               

               
Conread position:
               
58-222
               

               
Cow position:
               
chr1:64019532-64019364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
59-206
               

               
Cow position:
               
chr1:69445319-69445473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
61-189
               

               
Cow position:
               
chr1:7793529-7793398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
61-193
               

               
Cow position:
               
chr1:42178737-42178873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
61-205
               

               
Cow position:
               
chr1:69940831-69940681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
61-207
               

               
Cow position:
               
chr1:101280742-101280598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
33, 49
               

               
Conread position:
               
62-184
               

               
Cow position:
               
chr1:90267714-90267839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
62-198
               

               
Cow position:
               
chr1:49334399-49334257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
62-200
               

               
Cow position:
               
chr1:85339386-85339519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
62-204
               

               
Cow position:
               
chr1:20864050-20864192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 49
               

               
Conread position:
               
62-209
               

               
Cow position:
               
chr1:759425-759274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
62-217
               

               
Cow position:
               
chr1:22461245-22461091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
28, 131
               

               
Conread position:
               
62-223
               

               
Cow position:
               
chr1:67918750-67918915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
62-229
               

               
Cow position:
               
chr1:92603011-92603184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
62-304
               

               
Cow position:
               
chr1:24791953-24791694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
62-310
               

               
Cow position:
               
chr1:68845176-68844945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
33, 120
               

               
Conread position:
               
62-312
               

               
Cow position:
               
chr1:19304565-19304814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 67
               

               
Conread position:
               
63-185
               

               
Cow position:
               
chr1:95516033-95516159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
63-201
               

               
Cow position:
               
chr1:93590592-93590450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
63-204
               

               
Cow position:
               
chr1:21954227-21954085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
16, 61
               

               
Conread position:
               
63-207
               

               
Cow position:
               
chr1:11489167-11489017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
64-209
               

               
Cow position:
               
chr1:73551515-73551365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
29, 131
               

               
Conread position:
               
66-293
               

               
Cow position:
               
chr1:83783933-83783705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
23, 118
               

               
Conread position:
               
67-207
               

               
Cow position:
               
chr1:76518420-76518564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
67-288
               

               
Cow position:
               
chr1:82877183-82877412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
70-195
               

               
Cow position:
               
chr1:81364261-81364390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
70-196
               

               
Cow position:
               
chr1:51371811-51371687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 17
               

               
Conread position:
               
70-198
               

               
Cow position:
               
chr1:19997971-19997842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 85
               

               
Conread position:
               
70-199
               

               
Cow position:
               
chr1:32014199-32014330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
71-209
               

               
Cow position:
               
chr1:83606448-83606308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
22, 124
               

               
Conread position:
               
71-312
               

               
Cow position:
               
chr1:69185720-69185469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
117, 22
               

               
Conread position:
               
73-207
               

               
Cow position:
               
chr1:89298104-89297969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 70
               

               
Conread position:
               
73-207
               

               
Cow position:
               
chr1:89301713-89301578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 70
               

               
Conread position:
               
73-209
               

               
Cow position:
               
chr1:95049860-95049724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 109
               

               
Conread position:
               
73-231
               

               
Cow position:
               
chr1:80306367-80306211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
103, 20
               

               
Conread position:
               
74-184
               

               
Cow position:
               
chr1:81858894-81858781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
74-209
               

               
Cow position:
               
chr1:31630282-31630144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
19, 130
               

               
Conread position:
               
75-196
               

               
Cow position:
               
chr1:45673762-45673885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
75-310
               

               
Cow position:
               
chr1:18547974-18547739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
12, 88
               

               
Conread position:
               
75-310
               

               
Cow position:
               
chr1:18550112-18549877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
12, 88
               

               
Conread position:
               
78-207
               

               
Cow position:
               
chr1:54569709-54569840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
78-313
               

               
Cow position:
               
chr1:42822282-42822507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
9, 111
               

               
Conread position:
               
79-178
               

               
Cow position:
               
chr1:22153706-22153806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
79-198
               

               
Cow position:
               
chr1:79409463-79409585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
79-198
               

               
Cow position:
               
chr1:87149803-87149682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
79-200
               

               
Cow position:
               
chr1:81638560-81638684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
79-201
               

               
Cow position:
               
chr1:98557107-98556983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
79-207
               

               
Cow position:
               
chr1:49297663-49297790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
8, 101
               

               
Conread position:
               
79-208
               

               
Cow position:
               
chr1:25022065-25021932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
79-209
               

               
Cow position:
               
chr1:46245727-46245599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 66
               

               
Conread position:
               
79-226
               

               
Cow position:
               
chr1:19031289-19031146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
32, 78
               

               
Conread position:
               
79-293
               

               
Cow position:
               
chr1:3417367-3417572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
6, 113
               

               
Conread position:
               
79-309
               

               
Cow position:
               
chr1:45874056-45873836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
222, 112
               

               
Conread position:
               
80-209
               

               
Cow position:
               
chr1:64457980-64458109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
30, 7
               

               
Conread position:
               
80-307
               

               
Cow position:
               
chr1:49358061-49358299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
10, 205
               

               
Conread position:
               
81-198
               

               
Cow position:
               
chr1:63905245-63905126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
81-223
               

               
Cow position:
               
chr1:69179538-69179682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 9
               

               
Conread position:
               
82-188
               

               
Cow position:
               
chr1:94823377-94823269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
82-196
               

               
Cow position:
               
chr1:8353394-8353510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
82-207
               

               
Cow position:
               
chr1:36018762-36018641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
5, 19
               

               
Conread position:
               
82-209
               

               
Cow position:
               
chr1:39684129-39684003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
5, 73
               

               
Conread position:
               
82-223
               

               
Cow position:
               
chr1:43148530-43148389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
5, 119
               

               
Conread position:
               
82-270
               

               
Cow position:
               
chr1:57359477-57359665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
11, 130
               

               
Conread position:
               
82-304
               

               
Cow position:
               
chr1:38055486-38055256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
5, 198
               

               
Conread position:
               
83-209
               

               
Cow position:
               
chr1:32217259-32217385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
27, 43
               

               
Conread position:
               
85-207
               

               
Cow position:
               
chr1:70146892-70146769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
85-311
               

               
Cow position:
               
chr1:53640734-53640961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
123, 33
               

               
Conread position:
               
86-195
               

               
Cow position:
               
chr1:77685961-77685851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
86-204
               

               
Cow position:
               
chr1:64706513-64706632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
24, 49
               

               
Conread position:
               
86-209
               

               
Cow position:
               
chr1:69411677-69411555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
23, 106
               

               
Conread position:
               
86-226
               

               
Cow position:
               
chr1:86383786-86383645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
86-230
               

               
Cow position:
               
chr1:23055067-23055214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
86-233
               

               
Cow position:
               
chr1:99024211-99024063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
86-312
               

               
Cow position:
               
chr1:47883596-47883381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
24, 35
               

               
Conread position:
               
87-201
               

               
Cow position:
               
chr1:48301430-48301317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
23, 94
               

               
Conread position:
               
87-207
               

               
Cow position:
               
chr1:67539580-67539701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
87-207
               

               
Cow position:
               
chr1:79178649-79178770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
88-206
               

               
Cow position:
               
chr1:23372881-23372999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
22, 91
               

               
Conread position:
               
88-207
               

               
Cow position:
               
chr1:1380019-1380139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
88-312
               

               
Cow position:
               
chr1:32857060-32857275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
17, 104
               

               
Conread position:
               
89-209
               

               
Cow position:
               
chr1:731950-731828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
89-301
               

               
Cow position:
               
chr1:52506149-52505927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
92-196
               

               
Cow position:
               
chr1:70044381-70044484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
8, 18
               

               
Conread position:
               
92-304
               

               
Cow position:
               
chr1:1875412-1875616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
9, 98
               

               
Conread position:
               
92-311
               

               
Cow position:
               
chr1:6962918-6963119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
209, 12
               

               
Conread position:
               
92-314
               

               
Cow position:
               
chr1:49299688-49299901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
17, 119
               

               
Conread position:
               
93-310
               

               
Cow position:
               
chr1:76080834-76081048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 35
               

               
Conread position:
               
95-309
               

               
Cow position:
               
chr1:57331455-57331249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
15, 8
               

               
Conread position:
               
100-206
               

               
Cow position:
               
chr1:43296685-43296578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
10, 0
               
100-313UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr1:42404169-42404364 (view  custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 82
               
109-244UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr1:74010956-74011094 (view  custom track)

               
               
               
Alignm length:
139

               
               
               
Alignm identity:
105

               
               
               
Alignm E-value:
2e-21

               
               
               
Alignm gaps (pig, cow):
95, 0
109-307UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr1:44678332-44678521 (view  custom track)

               
               
               
Alignm length:
199

               
               
               
Alignm identity:
142

               
               
               
Alignm E-value:
2e-23

               
               
               
Alignm gaps (pig, cow):
44, 0

               
               
               Conread position:110-195
               
               
               Cow position:chr1:84787315-84787400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:86
               
               
               Alignm identity:76
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:119-231
               
               
               Cow position:chr1:15167885-15167772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:119-311
               
               
               Cow position:chr1:92095419-92095595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:120-300
               
               
               Cow position:chr1:9181699-9181888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:126-309
               
               
               Cow position:chr1:51654709-51654883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:126-311
               
               
               Cow position:chr1:96322990-96323182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:127-311
               
               
               Cow position:chr1:8359850-8359669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):116, 9

               
               
               Conread position:128-310
               
               
               Cow position:chr1:74266975-74266789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:157-304
               
               
               Cow position:chr1:92384378-92384522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:159-311
               
               
               Cow position:chr1:50287739-50287589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:180-308
               
               
               Cow position:chr1:26158013-26157887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:187-309
               
               
               Cow position:chr1:65883303-65883424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:1-158
               
               
               Cow position:chr10:29588939-29588776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:1-173
               
               
               Cow position:chr10:36107520-36107339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):24, 44

               
               
               Conread position:1-176
               
               
               Cow position:chr10:10026249-10026431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):24, 53

               
               
               Conread position:1-176
               
               
               Cow position:chr10:22321416-22321604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:1-177
               
               
               Cow position:chr10:1423732-1423913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-178
               
               
               Cow position:chr10:28105185-28104996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-184
               
               
               Cow position:chr10:29166177-29166362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):18, 77

               
               
               Conread position:1-184
               
               
               Cow position:chr10:36002090-36002287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):18, 118

               
               
               Conread position:1-186
               
               
               Cow position:chr10:38430664-38430473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 38

               
               
               Conread position:1-189
               
               
               Cow position:chr10:2849248-2849443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):51, 42

               
               
               Conread position:1-189
               
               
               Cow position:chr10:51942689-51942883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):21, 43

               
               
               Conread position:1-192
               
               
               Cow position:chr10:12486161-12486360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):45, 142

               
               
               Conread position:1-197
               
               
               Cow position:chr10:29102436-29102244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):86, 33

               
               
               Conread position:1-198
               
               
               Cow position:chr10:1488737-1488936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):78, 55

               
               
               Conread position:1-198
               
               
               Cow position:chr10:31362316-31362111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:1-198
               
               
               Cow position:chr10:34430327-34430124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):17, 29

               
               
               Conread position:1-198
               
               
               Cow position:chr10:52296392-52296598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):21, 112

               
               
               Conread position:1-198
               
               
               Cow position:chr10:59010243-59010032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-201
               
               
               Cow position:chr10:9576140-9575942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:1-201
               
               
               Cow position:chr10:15309505-15309294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-201
               
               
               Cow position:chr10:17073467-17073260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 36

               
               
               Conread position:1-201
               
               
               Cow position:chr10:21082282-21082487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):18, 44

               
               
               Conread position:1-201
               
               
               Cow position:chr10:47542980-47543182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):20, 56

               
               
               Conread position:1-204
               
               
               Cow position:chr10:3364285-3364071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:1-204
               
               
               Cow position:chr10:31527875-31528079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):18, 137

               
               
               Conread position:1-204
               
               
               Cow position:chr10:40737895-40738102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 37

               
               
               Conread position:1-206
               
               
               Cow position:chr10:49942364-49942580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr10:16598578-16598800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):18, 196

               
               
               Conread position:1-207
               
               
               Cow position:chr10:18042079-18042294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-208
               
               
               Cow position:chr10:12392716-12392498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 157

               
               
               Conread position:1-215
               
               
               Cow position:chr10:5151242-5151467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 69

               
               
               Conread position:1-259
               
               
               Cow position:chr10:20997384-20997126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):48, 22

               
               
               Conread position:1-260
               
               
               Cow position:chr10:24375444-24375708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):20, 80

               
               
               Conread position:1-287
               
               
               Cow position:chr10:36290731-36291030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):52, 14

               
               
               Conread position:1-292
               
               
               Cow position:chr10:22472211-22472514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):23, 206

               
               
               Conread position:1-298
               
               
               Cow position:chr10:25699550-25699830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):57, 42

               
               
               Conread position:1-304
               
               
               Cow position:chr10:64961205-64961506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):52, 88

               
               
               Conread position:1-307
               
               
               Cow position:chr10:24732205-24732521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 46

               
               
               Conread position:1-308
               
               
               Cow position:chr10:51696634-51696951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):18, 247

               
               
               Conread position:1-309
               
               
               Cow position:chr10:50359814-50360108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):45, 78

               
               
               Conread position:1-311
               
               
               Cow position:chr10:77281-77611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):21, 44

               
               
               Conread position:1-311
               
               
               Cow position:chr10:13315833-13316141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 201

               
               
               Conread position:1-330
               
               
               Cow position:chr10:24022386-24022046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):16, 140

               
               
               Conread position:1-338
               
               
               Cow position:chr10:55930095-55930440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 185

               
               
               Conread position:2-201
               
               
               Cow position:chr10:25717-25931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:2-202
               
               
               Cow position:chr10:23912602-23912404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):20, 93

               
               
               Conread position:3-176
               
               
               Cow position:chr10:41408173-41408356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 51

               
               
               Conread position:3-190
               
               
               Cow position:chr10:6532257-6532063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):20, 97

               
               
               Conread position:3-201
               
               
               Cow position:chr10:10752088-10751884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:3-204
               
               
               Cow position:chr10:55396084-55395867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:3-205
               
               
               Cow position:chr10:51289151-51289361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):18, 30

               
               
               Conread position:3-209
               
               
               Cow position:chr10:47651196-47651409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):16, 186

               
               
               Conread position:3-215
               
               
               Cow position:chr10:35901223-35901431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 37

               
               
               Conread position:3-222
               
               
               Cow position:chr10:60960834-60961062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:3-288
               
               
               Cow position:chr10:15293169-15293446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:216
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):49, 193

               
               
               Conread position:3-288
               
               
               Cow position:chr10:59588279-59587986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):16, 145

               
               
               Conread position:3-315
               
               
               Cow position:chr10:30441148-30440829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):15, 200

               
               
               Conread position:4-212
               
               
               Cow position:chr10:59839383-59839169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):61, 124

               
               
               Conread position:5-172
               
               
               Cow position:chr10:40420939-40420770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):47, 120

               
               
               Conread position:5-173
               
               
               Cow position:chr10:533433-533610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):46, 38

               
               
               Conread position:5-174
               
               
               Cow position:chr10:50134903-50134724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 66

               
               
               Conread position:5-176
               
               
               Cow position:chr10:45624246-45624075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):88, 41

               
               
               Conread position:5-179
               
               
               Cow position:chr10:46184648-46184824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):36, 104

               
               
               Conread position:5-179
               
               
               Cow position:chr10:65423995-65423820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:5-181
               
               
               Cow position:chr10:33732964-33732786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):58, 123

               
               
               Conread position:5-181
               
               
               Cow position:chr10:47412201-47412020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 111

               
               
               Conread position:5-184
               
               
               Cow position:chr10:12315060-12315236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):54, 103

               
               
               Conread position:5-184
               
               
               Cow position:chr10:29279345-29279535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-186
               
               
               Cow position:chr10:58935265-58935078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 113

               
               
               Conread position:5-187
               
               
               Cow position:chr10:1976412-1976225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):16, 12

               
               
               Conread position:5-187
               
               
               Cow position:chr10:12100645-12100451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-188
               
               
               Cow position:chr10:24276828-24276632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:5-188
               
               
               Cow position:chr10:52278634-52278818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):74, 22

               
               
               Conread position:5-188
               
               
               Cow position:chr10:53674728-53674919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):48, 10

               
               
               Conread position:5-188
               
               
               Cow position:chr10:59151958-59151770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:5-188
               
               
               Cow position:chr10:65132863-65133037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:5-189
               
               
               Cow position:chr10:6663930-6664128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr10:61982290-61982481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):33, 59

               
               
               Conread position:5-189
               
               
               Cow position:chr10:65345568-65345379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:5-190
               
               
               Cow position:chr10:56080266-56080078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:5-194
               
               
               Cow position:chr10:4164171-4164369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-195
               
               
               Cow position:chr10:721203-721399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):46, 114

               
               
               Conread position:5-195
               
               
               Cow position:chr10:4109495-4109687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):83, 174

               
               
               Conread position:5-195
               
               
               Cow position:chr10:23886556-23886360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):49, 33

               
               
               Conread position:5-195
               
               
               Cow position:chr10:28670920-28670718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):41, 188

               
               
               Conread position:5-195
               
               
               Cow position:chr10:54948231-54948035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):58, 38

               
               
               Conread position:5-196
               
               
               Cow position:chr10:15868153-15868353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-196
               
               
               Cow position:chr10:43508895-43509101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-196
               
               
               Cow position:chr10:62219730-62219935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr10:6435963-6436163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr10:39387364-39387556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:5-198
               
               
               Cow position:chr10:53248106-53247900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):33, 172

               
               
               Conread position:5-200
               
               
               Cow position:chr10:54477010-54477210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):86, 38

               
               
               Conread position:5-201
               
               
               Cow position:chr10:5543344-5543144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):16, 12

               
               
               Conread position:5-201
               
               
               Cow position:chr10:20553086-20553291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 62

               
               
               Conread position:5-201
               
               
               Cow position:chr10:24756320-24756518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:5-201
               
               
               Cow position:chr10:31005115-31004914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:5-201
               
               
               Cow position:chr10:35862321-35862122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):85, 178

               
               
               Conread position:5-201
               
               
               Cow position:chr10:37295761-37295566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:5-201
               
               
               Cow position:chr10:37415691-37415896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:5-204
               
               
               Cow position:chr10:22341471-22341686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):41, 157

               
               
               Conread position:5-204
               
               
               Cow position:chr10:46150781-46150980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:5-204
               
               
               Cow position:chr10:50183145-50182942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):38, 114

               
               
               Conread position:5-204
               
               
               Cow position:chr10:61510037-61509835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):52, 33

               
               
               Conread position:5-206
               
               
               Cow position:chr10:63276296-63276505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):58, 151

               
               
               Conread position:5-207
               
               
               Cow position:chr10:16645285-16645077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):50, 32

               
               
               Conread position:5-207
               
               
               Cow position:chr10:24753053-24753255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):88, 133

               
               
               Conread position:5-207
               
               
               Cow position:chr10:43487615-43487825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):57, 119

               
               
               Conread position:5-207
               
               
               Cow position:chr10:45379100-45378892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):58, 38

               
               
               Conread position:5-207
               
               
               Cow position:chr10:52881716-52881506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr10:56475370-56475582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):58, 38

               
               
               Conread position:5-207
               
               
               Cow position:chr10:61588358-61588148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr10:66194400-66194192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):50, 18

               
               
               Conread position:5-208
               
               
               Cow position:chr10:2202220-2202016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):41, 145

               
               
               Conread position:5-208
               
               
               Cow position:chr10:16986234-16986445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):43, 11

               
               
               Conread position:5-209
               
               
               Cow position:chr10:33084533-33084327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):42, 103

               
               
               Conread position:5-212
               
               
               Cow position:chr10:2537999-2538207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):53, 89

               
               
               Conread position:5-214
               
               
               Cow position:chr10:11009316-11009531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:5-214
               
               
               Cow position:chr10:13586612-13586822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):86, 20

               
               
               Conread position:5-214
               
               
               Cow position:chr10:23506587-23506372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):33, 64

               
               
               Conread position:5-215
               
               
               Cow position:chr10:42312807-42313022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):48, 192

               
               
               Conread position:5-221
               
               
               Cow position:chr10:46493094-46492873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):45, 179

               
               
               Conread position:5-228
               
               
               Cow position:chr10:3998807-3999045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-230
               
               
               Cow position:chr10:59164191-59163970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):107, 85

               
               
               Conread position:5-237
               
               
               Cow position:chr10:15427163-15426939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):60, 38

               
               
               Conread position:5-267
               
               
               Cow position:chr10:61839499-61839757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):44, 92

               
               
               Conread position:5-292
               
               
               Cow position:chr10:31791354-31791076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):41, 30

               
               
               Conread position:5-303
               
               
               Cow position:chr10:25913891-25913607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 112

               
               
               Conread position:5-304
               
               
               Cow position:chr10:9083201-9083508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):48, 170

               
               
               Conread position:5-304
               
               
               Cow position:chr10:47724855-47725155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):76, 21

               
               
               Conread position:5-304
               
               
               Cow position:chr10:59664073-59663762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):41, 181

               
               
               Conread position:5-307
               
               
               Cow position:chr10:29919930-29919620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:219
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):88, 37

               
               
               Conread position:5-309
               
               
               Cow position:chr10:10720769-10720458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):54, 176

               
               
               Conread position:5-309
               
               
               Cow position:chr10:28776254-28776575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):37, 52

               
               
               Conread position:5-310
               
               
               Cow position:chr10:42230693-42230986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 172

               
               
               Conread position:5-311
               
               
               Cow position:chr10:43287964-43287646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:5-311
               
               
               Cow position:chr10:52113767-52113463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):48, 111

               
               
               Conread position:5-313
               
               
               Cow position:chr10:31374191-31373864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:240
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):41, 161

               
               
               Conread position:5-321
               
               
               Cow position:chr10:17926175-17925854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:236
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):32, 206

               
               
               Conread position:6-177
               
               
               Cow position:chr10:517195-517365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):88, 51

               
               
               Conread position:6-188
               
               
               Cow position:chr10:54819170-54819359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:6-198
               
               
               Cow position:chr10:45370959-45371159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:6-198
               
               
               Cow position:chr10:45658050-45658248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:6-198
               
               
               Cow position:chr10:64041987-64042186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):16, 158

               
               
               Conread position:6-201
               
               
               Cow position:chr10:54848679-54848884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):16, 109

               
               
               Conread position:6-207
               
               
               Cow position:chr10:66127766-66127964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):16, 45

               
               
               Conread position:6-301
               
               
               Cow position:chr10:52069581-52069285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):40, 181

               
               
               Conread position:6-311
               
               
               Cow position:chr10:52167083-52167408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):40, 127

               
               
               Conread position:7-187
               
               
               Cow position:chr10:37768207-37768395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 62

               
               
               Conread position:7-187
               
               
               Cow position:chr10:57059377-57059189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:7-195
               
               
               Cow position:chr10:24132914-24132723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):56, 101

               
               
               Conread position:7-196
               
               
               Cow position:chr10:48462432-48462242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):41, 121

               
               
               Conread position:7-197
               
               
               Cow position:chr10:10137773-10137967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):48, 36

               
               
               Conread position:7-198
               
               
               Cow position:chr10:19549581-19549385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):45, 177

               
               
               Conread position:7-198
               
               
               Cow position:chr10:41760417-41760218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):31, 46

               
               
               Conread position:7-200
               
               
               Cow position:chr10:34661408-34661220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 32

               
               
               Conread position:7-201
               
               
               Cow position:chr10:7383705-7383506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 56

               
               
               Conread position:7-201
               
               
               Cow position:chr10:46575413-46575615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):31, 181

               
               
               Conread position:7-202
               
               
               Cow position:chr10:52046769-52046975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):45, 187

               
               
               Conread position:7-204
               
               
               Cow position:chr10:33915158-33914956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:7-207
               
               
               Cow position:chr10:42637130-42637345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:7-208
               
               
               Cow position:chr10:4184098-4184307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):42, 194

               
               
               Conread position:7-209
               
               
               Cow position:chr10:40107010-40107210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 106

               
               
               Conread position:7-222
               
               
               Cow position:chr10:62286459-62286681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 183

               
               
               Conread position:7-308
               
               
               Cow position:chr10:17175941-17176229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):51, 101

               
               
               Conread position:7-310
               
               
               Cow position:chr10:15318789-15319084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 180

               
               
               Conread position:7-311
               
               
               Cow position:chr10:9579060-9578746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 210

               
               
               Conread position:10-201
               
               
               Cow position:chr10:29091432-29091241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):16, 26

               
               
               Conread position:10-314
               
               
               Cow position:chr10:53405382-53405689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):12, 59

               
               
               Conread position:12-194
               
               
               Cow position:chr10:34646540-34646347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:12-195
               
               
               Cow position:chr10:15871965-15871772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:12-196
               
               
               Cow position:chr10:37014543-37014735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:12-220
               
               
               Cow position:chr10:60491350-60491147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 50

               
               
               Conread position:12-292
               
               
               Cow position:chr10:29252074-29252351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):10, 114

               
               
               Conread position:13-157
               
               
               Cow position:chr10:22360196-22360044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:13-201
               
               
               Cow position:chr10:51804125-51803942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):74, 25

               
               
               Conread position:13-204
               
               
               Cow position:chr10:28395392-28395194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):36, 13

               
               
               Conread position:13-206
               
               
               Cow position:chr10:44764596-44764385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):42, 180

               
               
               Conread position:13-214
               
               
               Cow position:chr10:47690296-47690509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:13-231
               
               
               Cow position:chr10:29526985-29526767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):16, 101

               
               
               Conread position:14-188
               
               
               Cow position:chr10:59849327-59849512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:14-204
               
               
               Cow position:chr10:34673928-34674126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):32, 173

               
               
               Conread position:15-179
               
               
               Cow position:chr10:53973761-53973926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):23, 49

               
               
               Conread position:15-192
               
               
               Cow position:chr10:22633711-22633528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):46, 23

               
               
               Conread position:15-201
               
               
               Cow position:chr10:15817879-15817688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 28

               
               
               Conread position:15-207
               
               
               Cow position:chr10:46934873-46934669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:15-207
               
               
               Cow position:chr10:47182651-47182457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):27, 11

               
               
               Conread position:15-212
               
               
               Cow position:chr10:59675340-59675136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 28

               
               
               Conread position:15-214
               
               
               Cow position:chr10:30746595-30746791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):78, 28

               
               
               Conread position:15-237
               
               
               Cow position:chr10:58259604-58259383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):64, 23

               
               
               Conread position:15-307
               
               
               Cow position:chr10:4197894-4198182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):78, 90

               
               
               Conread position:16-192
               
               
               Cow position:chr10:1749501-1749682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 94

               
               
               Conread position:16-201
               
               
               Cow position:chr10:50533956-50533762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 98

               
               
               Conread position:16-237
               
               
               Cow position:chr10:35893997-35893764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):6, 148

               
               
               Conread position:17-196
               
               
               Cow position:chr10:45295228-45295043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 181

               
               
               Conread position:17-202
               
               
               Cow position:chr10:69934858-69934673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):45, 62

               
               
               Conread position:17-288
               
               
               Cow position:chr10:27749590-27749848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):11, 138

               
               
               Conread position:19-186
               
               
               Cow position:chr10:68829364-68829192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):33, 19

               
               
               Conread position:19-197
               
               
               Cow position:chr10:51306259-51306443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 164

               
               
               Conread position:20-176
               
               
               Cow position:chr10:11221621-11221784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:20-176
               
               
               Cow position:chr10:38241002-38241160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:20-176
               
               
               Cow position:chr10:60237175-60237014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 104

               
               
               Conread position:20-176
               
               
               Cow position:chr10:68183032-68182873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):73, 23

               
               
               Conread position:20-179
               
               
               Cow position:chr10:23936401-23936561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 22

               
               
               Conread position:20-183
               
               
               Cow position:chr10:49846697-49846863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):67, 23

               
               
               Conread position:20-183
               
               
               Cow position:chr10:53357816-53357984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):26, 91

               
               
               Conread position:20-186
               
               
               Cow position:chr10:5020450-5020291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):63, 33

               
               
               Conread position:20-186
               
               
               Cow position:chr10:45871438-45871606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):42, 18

               
               
               Conread position:20-188
               
               
               Cow position:chr10:58488132-58488300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 124

               
               
               Conread position:20-189
               
               
               Cow position:chr10:35753038-35752866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):73, 23

               
               
               Conread position:20-189
               
               
               Cow position:chr10:51727499-51727329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):28, 18

               
               
               Conread position:20-195
               
               
               Cow position:chr10:13918334-13918159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 76

               
               
               Conread position:20-196
               
               
               Cow position:chr10:55382232-55382416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:20-198
               
               
               Cow position:chr10:13197916-13197728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-201
               
               
               Cow position:chr10:11463747-11463559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):29, 17

               
               
               Conread position:20-201
               
               
               Cow position:chr10:19098756-19098942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):32, 23

               
               
               Conread position:20-201
               
               
               Cow position:chr10:64182370-64182550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):32, 111

               
               
               Conread position:20-204
               
               
               Cow position:chr10:17844683-17844876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:20-204
               
               
               Cow position:chr10:21447987-21447800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:20-204
               
               
               Cow position:chr10:41132185-41132374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):33, 150

               
               
               Conread position:20-204
               
               
               Cow position:chr10:63484560-63484749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:20-207
               
               
               Cow position:chr10:24745045-24745230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):32, 73

               
               
               Conread position:20-207
               
               
               Cow position:chr10:25465982-25466179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr10:33194949-33195154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr10:41626512-41626705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):33, 106

               
               
               Conread position:20-207
               
               
               Cow position:chr10:50332506-50332705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 115

               
               
               Conread position:20-209
               
               
               Cow position:chr10:19539903-19539710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):39, 30

               
               
               Conread position:20-209
               
               
               Cow position:chr10:19895316-19895505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):28, 77

               
               
               Conread position:20-212
               
               
               Cow position:chr10:57461273-57461469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):26, 166

               
               
               Conread position:20-213
               
               
               Cow position:chr10:28429579-28429386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):73, 24

               
               
               Conread position:20-213
               
               
               Cow position:chr10:67581200-67581401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):31, 170

               
               
               Conread position:20-214
               
               
               Cow position:chr10:52120658-52120855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):73, 162

               
               
               Conread position:20-215
               
               
               Cow position:chr10:20132607-20132406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:20-215
               
               
               Cow position:chr10:24871084-24871286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:20-218
               
               
               Cow position:chr10:15424972-15425175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):43, 88

               
               
               Conread position:20-222
               
               
               Cow position:chr10:13311650-13311858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 57

               
               
               Conread position:20-234
               
               
               Cow position:chr10:34660324-34660102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):38, 198

               
               
               Conread position:20-267
               
               
               Cow position:chr10:49456169-49455933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):59, 30

               
               
               Conread position:20-304
               
               
               Cow position:chr10:22567523-22567252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 30

               
               
               Conread position:20-304
               
               
               Cow position:chr10:56180484-56180759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):35, 176

               
               
               Conread position:20-304
               
               
               Cow position:chr10:56683285-56683010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):28, 125

               
               
               Conread position:20-326
               
               
               Cow position:chr10:2462567-2462258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 85

               
               
               Conread position:21-194
               
               
               Cow position:chr10:17691302-17691142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:21-196
               
               
               Cow position:chr10:55319409-55319597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:21-202
               
               
               Cow position:chr10:11059677-11059863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:21-213
               
               
               Cow position:chr10:33311555-33311368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):34, 73

               
               
               Conread position:21-222
               
               
               Cow position:chr10:26209332-26209120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):21, 56

               
               
               Conread position:23-169
               
               
               Cow position:chr10:48282633-48282477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:24-186
               
               
               Cow position:chr10:59843991-59843817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:25-204
               
               
               Cow position:chr10:42745841-42746024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 154

               
               
               Conread position:26-201
               
               
               Cow position:chr10:63883864-63884044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):22, 63

               
               
               Conread position:26-207
               
               
               Cow position:chr10:14817237-14817052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 116

               
               
               Conread position:26-207
               
               
               Cow position:chr10:70000799-70000614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):22, 141

               
               
               Conread position:27-189
               
               
               Cow position:chr10:20485628-20485465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):66, 26

               
               
               Conread position:28-228
               
               
               Cow position:chr10:24903062-24902851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:30-207
               
               
               Cow position:chr10:55122741-55122919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):63, 13

               
               
               Conread position:32-209
               
               
               Cow position:chr10:23128052-23127871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):56, 25

               
               
               Conread position:32-220
               
               
               Cow position:chr10:32928909-32929102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:35-188
               
               
               Cow position:chr10:58737020-58736872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:35-189
               
               
               Cow position:chr10:4311107-4311267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:35-198
               
               
               Cow position:chr10:64285858-64285692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):59, 149

               
               
               Conread position:35-201
               
               
               Cow position:chr10:17568162-17567995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):58, 10

               
               
               Conread position:35-209
               
               
               Cow position:chr10:43273108-43272930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:36-247
               
               
               Cow position:chr10:48407075-48407291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):13, 29

               
               
               Conread position:36-252
               
               
               Cow position:chr10:17766034-17765812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):52, 21

               
               
               Conread position:36-304
               
               
               Cow position:chr10:34175043-34174774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):20, 161

               
               
               Conread position:37-178
               
               
               Cow position:chr10:22480226-22480369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):53, 20

               
               
               Conread position:37-179
               
               
               Cow position:chr10:17293492-17293347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):56, 25

               
               
               Conread position:37-204
               
               
               Cow position:chr10:23576486-23576652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):49, 28

               
               
               Conread position:37-204
               
               
               Cow position:chr10:37426194-37426024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 25

               
               
               Conread position:38-204
               
               
               Cow position:chr10:9656589-9656413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:38-207
               
               
               Cow position:chr10:48317006-48316835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):55, 24

               
               
               Conread position:39-187
               
               
               Cow position:chr10:35604990-35605142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:39-197
               
               
               Cow position:chr10:49169094-49168932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):52, 27

               
               
               Conread position:39-209
               
               
               Cow position:chr10:55600215-55600043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):54, 20

               
               
               Conread position:40-214
               
               
               Cow position:chr10:48377459-48377281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):19, 84

               
               
               Conread position:41-197
               
               
               Cow position:chr10:14093301-14093145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 86

               
               
               Conread position:41-198
               
               
               Cow position:chr10:40744059-40744216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:43-178
               
               
               Cow position:chr10:705054-704912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:43-198
               
               
               Cow position:chr10:26631353-26631509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 94

               
               
               Conread position:43-201
               
               
               Cow position:chr10:54699762-54699602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):9, 139

               
               
               Conread position:43-206
               
               
               Cow position:chr10:41115849-41116016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:45-186
               
               
               Cow position:chr10:32127710-32127860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 12

               
               
               Conread position:45-207
               
               
               Cow position:chr10:10027522-10027683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 12

               
               
               Conread position:45-307
               
               
               Cow position:chr10:6530133-6530395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):49, 17

               
               
               Conread position:45-312
               
               
               Cow position:chr10:30121351-30121617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):7, 180

               
               
               Conread position:46-214
               
               
               Cow position:chr10:24831139-24830960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:46-300
               
               
               Cow position:chr10:49253315-49253557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):61, 16

               
               
               Conread position:46-304
               
               
               Cow position:chr10:30455886-30455630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):47, 153

               
               
               Conread position:46-304
               
               
               Cow position:chr10:32573675-32573928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):42, 141

               
               
               Conread position:46-308
               
               
               Cow position:chr10:49947932-49947677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):34, 137

               
               
               Conread position:46-310
               
               
               Cow position:chr10:2694913-2695170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:47-299
               
               
               Cow position:chr10:627937-628193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):32, 15

               
               
               Conread position:47-311
               
               
               Cow position:chr10:63932533-63932266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):15, 118

               
               
               Conread position:48-310
               
               
               Cow position:chr10:50042554-50042799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):7, 64

               
               
               Conread position:51-204
               
               
               Cow position:chr10:47159167-47159324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:51-301
               
               
               Cow position:chr10:17388793-17389027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):39, 11

               
               
               Conread position:54-195
               
               
               Cow position:chr10:16944427-16944573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:56-187
               
               
               Cow position:chr10:50498565-50498432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:57-183
               
               
               Cow position:chr10:29349570-29349702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:57-187
               
               
               Cow position:chr10:48898624-48898758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:57-189
               
               
               Cow position:chr10:58285841-58285713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:57-196
               
               
               Cow position:chr10:34700589-34700731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):36, 125

               
               
               Conread position:57-199
               
               
               Cow position:chr10:32080233-32080376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):36, 55

               
               
               Conread position:57-199
               
               
               Cow position:chr10:33369746-33369887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 86

               
               
               Conread position:57-201
               
               
               Cow position:chr10:22981020-22980871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-201
               
               
               Cow position:chr10:63628147-63628294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 139

               
               
               Conread position:57-204
               
               
               Cow position:chr10:10152968-10153117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 107

               
               
               Conread position:57-204
               
               
               Cow position:chr10:52125726-52125580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):28, 86

               
               
               Conread position:57-207
               
               
               Cow position:chr10:16830428-16830275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 127

               
               
               Conread position:57-207
               
               
               Cow position:chr10:39258536-39258382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 97

               
               
               Conread position:57-209
               
               
               Cow position:chr10:13927693-13927848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:57-284
               
               
               Cow position:chr10:51223171-51222937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:183
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):29, 164

               
               
               Conread position:57-292
               
               
               Cow position:chr10:33371343-33371587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:186
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):36, 191

               
               
               Conread position:57-310
               
               
               Cow position:chr10:67260568-67260309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):36, 90

               
               
               Conread position:58-207
               
               
               Cow position:chr10:62454410-62454257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:59-204
               
               
               Cow position:chr10:48620051-48619902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:59-207
               
               
               Cow position:chr10:21564709-21564858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 89

               
               
               Conread position:61-184
               
               
               Cow position:chr10:38322326-38322200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:61-209
               
               
               Cow position:chr10:6516660-6516810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):32, 52

               
               
               Conread position:62-201
               
               
               Cow position:chr10:2857011-2857153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 76

               
               
               Conread position:62-207
               
               
               Cow position:chr10:23379097-23379246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:62-307
               
               
               Cow position:chr10:36947230-36946981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 124

               
               
               Conread position:66-176
               
               
               Cow position:chr10:38223591-38223477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:66-222
               
               
               Cow position:chr10:35795308-35795466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):11, 28

               
               
               Conread position:69-198
               
               
               Cow position:chr10:30787653-30787525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 17

               
               
               Conread position:69-201
               
               
               Cow position:chr10:50049880-50050011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:69-209
               
               
               Cow position:chr10:59214516-59214367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:71-201
               
               
               Cow position:chr10:35486467-35486332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:72-312
               
               
               Cow position:chr10:2260121-2260341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 9

               
               
               Conread position:73-307
               
               
               Cow position:chr10:57457607-57457849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):117, 231

               
               
               Conread position:74-209
               
               
               Cow position:chr10:52061796-52061933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):19, 73

               
               
               Conread position:75-237
               
               
               Cow position:chr10:22120146-22119978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:75-312
               
               
               Cow position:chr10:22139802-22139571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):12, 152

               
               
               Conread position:77-218
               
               
               Cow position:chr10:2696916-2697053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):111, 16

               
               
               Conread position:78-239
               
               
               Cow position:chr10:17448217-17448054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):9, 104

               
               
               Conread position:79-201
               
               
               Cow position:chr10:2708854-2708978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:79-201
               
               
               Cow position:chr10:58149187-58149063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-201
               
               
               Cow position:chr10:58637994-58638119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):14, 95

               
               
               Conread position:79-204
               
               
               Cow position:chr10:37795916-37795783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-207
               
               
               Cow position:chr10:13158095-13158226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-207
               
               
               Cow position:chr10:28223196-28223325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 45

               
               
               Conread position:79-207
               
               
               Cow position:chr10:39140302-39140431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):8, 24

               
               
               Conread position:79-212
               
               
               Cow position:chr10:48814445-48814314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):8, 103

               
               
               Conread position:79-309
               
               
               Cow position:chr10:48500371-48500604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):8, 57

               
               
               Conread position:79-310
               
               
               Cow position:chr10:53972121-53971896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):193, 29

               
               
               Conread position:80-311
               
               
               Cow position:chr10:31266065-31265830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):116, 13

               
               
               Conread position:81-201
               
               
               Cow position:chr10:52309043-52309164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 82

               
               
               Conread position:81-206
               
               
               Cow position:chr10:15602195-15602070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):29, 7

               
               
               Conread position:81-207
               
               
               Cow position:chr10:38799826-38799950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 28

               
               
               Conread position:81-312
               
               
               Cow position:chr10:22811075-22810853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):12, 138

               
               
               Conread position:82-195
               
               
               Cow position:chr10:33462400-33462285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:82-197
               
               
               Cow position:chr10:60032373-60032262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:82-304
               
               
               Cow position:chr10:5113855-5114067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):5, 69

               
               
               Conread position:84-309
               
               
               Cow position:chr10:48742540-48742329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):11, 99

               
               
               Conread position:85-207
               
               
               Cow position:chr10:36856142-36856018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:86-179
               
               
               Cow position:chr10:7493610-7493516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-195
               
               
               Cow position:chr10:37709026-37708917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 95

               
               
               Conread position:86-209
               
               
               Cow position:chr10:19394580-19394459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:86-214
               
               
               Cow position:chr10:64877720-64877597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 95

               
               
               Conread position:86-234
               
               
               Cow position:chr10:20505760-20505903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:87-221
               
               
               Cow position:chr10:889954-890087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):23, 101

               
               
               Conread position:88-201
               
               
               Cow position:chr10:19503291-19503176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:88-223
               
               
               Cow position:chr10:32986176-32986041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):9, 50

               
               
               Conread position:88-292
               
               
               Cow position:chr10:19866027-19866239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):22, 106

               
               
               Conread position:88-304
               
               
               Cow position:chr10:25529199-25528994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):23, 104

               
               
               Conread position:88-309
               
               
               Cow position:chr10:46941486-46941274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):22, 104

               
               
               Conread position:89-257
               
               
               Cow position:chr10:37785372-37785204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 79

               
               
               Conread position:89-304
               
               
               Cow position:chr10:37442536-37442738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):22, 93

               
               
               Conread position:89-310
               
               
               Cow position:chr10:2191118-2190894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:92-204
               
               
               Cow position:chr10:31812150-31812039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 31

               
               
               Conread position:93-198
               
               
               Cow position:chr10:35454943-35454838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 88

               
               
               Conread position:94-207
               
               
               Cow position:chr10:7309454-7309340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:95-207
               
               
               Cow position:chr10:30837037-30836923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:95-309
               
               
               Cow position:chr10:19071856-19072060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 93

               
               
               Conread position:109-318
               
               
               Cow position:chr10:22567143-22566923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):130, 71

               
               
               Conread position:118-313
               
               
               Cow position:chr10:68009988-68009808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:153-313
               
               
               Cow position:chr10:2936719-2936552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:154-311
               
               
               Cow position:chr10:14384852-14384700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:189-313
               
               
               Cow position:chr10:39109633-39109510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1-170
               
               
               Cow position:chr11:13040260-13040090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:1-171
               
               
               Cow position:chr11:7395041-7395212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 46

               
               
               Conread position:1-176
               
               
               Cow position:chr11:3833455-3833276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):22, 74

               
               
               Conread position:1-176
               
               
               Cow position:chr11:45434984-45435168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-176
               
               
               Cow position:chr11:48306442-48306259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-187
               
               
               Cow position:chr11:30639044-30638851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-187
               
               
               Cow position:chr11:80761475-80761279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):21, 38

               
               
               Conread position:1-190
               
               
               Cow position:chr11:80413114-80412911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-194
               
               
               Cow position:chr11:41080-41285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 94

               
               
               Conread position:1-195
               
               
               Cow position:chr11:44636854-44636648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):18, 190

               
               
               Conread position:1-196
               
               
               Cow position:chr11:25791789-25791587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):24, 41

               
               
               Conread position:1-198
               
               
               Cow position:chr11:17278760-17278566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):94, 41

               
               
               Conread position:1-198
               
               
               Cow position:chr11:23586541-23586748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:1-198
               
               
               Cow position:chr11:34646489-34646699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):18, 41

               
               
               Conread position:1-198
               
               
               Cow position:chr11:42066764-42066974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 16

               
               
               Conread position:1-199
               
               
               Cow position:chr11:42083376-42083578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):21, 109

               
               
               Conread position:1-200
               
               
               Cow position:chr11:21844229-21844027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):49, 115

               
               
               Conread position:1-201
               
               
               Cow position:chr11:31227866-31228075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):20, 45

               
               
               Conread position:1-201
               
               
               Cow position:chr11:35213263-35213055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:1-201
               
               
               Cow position:chr11:49148937-49149163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:1-201
               
               
               Cow position:chr11:62789032-62789242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):20, 69

               
               
               Conread position:1-201
               
               
               Cow position:chr11:65607787-65607578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 51

               
               
               Conread position:1-201
               
               
               Cow position:chr11:70978829-70978623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):24, 168

               
               
               Conread position:1-202
               
               
               Cow position:chr11:11125566-11125776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):21, 183

               
               
               Conread position:1-204
               
               
               Cow position:chr11:3393306-3393094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):42, 146

               
               
               Conread position:1-206
               
               
               Cow position:chr11:35723885-35724086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):86, 37

               
               
               Conread position:1-207
               
               
               Cow position:chr11:17493376-17493601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):18, 184

               
               
               Conread position:1-207
               
               
               Cow position:chr11:47311079-47310867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1-210
               
               
               Cow position:chr11:75285862-75285638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1-215
               
               
               Cow position:chr11:1380578-1380800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):21, 38

               
               
               Conread position:1-215
               
               
               Cow position:chr11:33753999-33753782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):21, 95

               
               
               Conread position:1-217
               
               
               Cow position:chr11:73512533-73512313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:1-224
               
               
               Cow position:chr11:42044092-42043861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):25, 113

               
               
               Conread position:1-224
               
               
               Cow position:chr11:71501228-71500997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):21, 182

               
               
               Conread position:1-228
               
               
               Cow position:chr11:45282827-45283065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):18, 35

               
               
               Conread position:1-247
               
               
               Cow position:chr11:33345341-33345606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-252
               
               
               Cow position:chr11:83033333-83033079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):21, 115

               
               
               Conread position:1-304
               
               
               Cow position:chr11:27932168-27932485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):20, 205

               
               
               Conread position:1-304
               
               
               Cow position:chr11:77758858-77758537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):19, 189

               
               
               Conread position:1-309
               
               
               Cow position:chr11:33341243-33340929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):21, 190

               
               
               Conread position:1-310
               
               
               Cow position:chr11:23138155-23137837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 31

               
               
               Conread position:1-310
               
               
               Cow position:chr11:48649883-48650175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):27, 43

               
               
               Conread position:1-311
               
               
               Cow position:chr11:30879581-30879909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):21, 77

               
               
               Conread position:1-311
               
               
               Cow position:chr11:64868111-64867803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):21, 51

               
               
               Conread position:1-317
               
               
               Cow position:chr11:21894254-21893951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):18, 29

               
               
               Conread position:2-188
               
               
               Cow position:chr11:29308479-29308680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:2-190
               
               
               Cow position:chr11:53553135-53553318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):100, 13

               
               
               Conread position:2-201
               
               
               Cow position:chr11:77319317-77319527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:2-308
               
               
               Cow position:chr11:62225885-62226196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 205

               
               
               Conread position:3-213
               
               
               Cow position:chr11:15373753-15373964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):15, 42

               
               
               Conread position:3-292
               
               
               Cow position:chr11:64351887-64351594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):15, 207

               
               
               Conread position:3-306
               
               
               Cow position:chr11:4653070-4652761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):44, 200

               
               
               Conread position:4-189
               
               
               Cow position:chr11:19946344-19946530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 19

               
               
               Conread position:4-206
               
               
               Cow position:chr11:21507912-21508122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):46, 33

               
               
               Conread position:4-207
               
               
               Cow position:chr11:8669916-8670134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:5-150
               
               
               Cow position:chr11:38874493-38874340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:5-166
               
               
               Cow position:chr11:55203550-55203382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:5-169
               
               
               Cow position:chr11:75965740-75965571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:5-170
               
               
               Cow position:chr11:52983586-52983757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-176
               
               
               Cow position:chr11:28993822-28993652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):74, 34

               
               
               Conread position:5-176
               
               
               Cow position:chr11:55333821-55333997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):58, 32

               
               
               Conread position:5-176
               
               
               Cow position:chr11:77546327-77546503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):47, 27

               
               
               Conread position:5-177
               
               
               Cow position:chr11:64638619-64638437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:5-178
               
               
               Cow position:chr11:49934827-49934641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr11:22499454-22499271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 26

               
               
               Conread position:5-184
               
               
               Cow position:chr11:68913052-68913236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-185
               
               
               Cow position:chr11:23232606-23232423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):25, 39

               
               
               Conread position:5-186
               
               
               Cow position:chr11:18572711-18572898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-187
               
               
               Cow position:chr11:8147989-8147800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):47, 38

               
               
               Conread position:5-187
               
               
               Cow position:chr11:16540771-16540961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-188
               
               
               Cow position:chr11:2917676-2917487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):48, 32

               
               
               Conread position:5-189
               
               
               Cow position:chr11:23251682-23251493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):50, 44

               
               
               Conread position:5-189
               
               
               Cow position:chr11:41603780-41603586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):46, 155

               
               
               Conread position:5-189
               
               
               Cow position:chr11:43360873-43360684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):53, 96

               
               
               Conread position:5-189
               
               
               Cow position:chr11:45631852-45631665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):47, 86

               
               
               Conread position:5-189
               
               
               Cow position:chr11:49152861-49153049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr11:71492945-71492761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:5-189
               
               
               Cow position:chr11:73354144-73353960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):88, 45

               
               
               Conread position:5-189
               
               
               Cow position:chr11:77118621-77118800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):88, 32

               
               
               Conread position:5-190
               
               
               Cow position:chr11:64101692-64101873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):96, 33

               
               
               Conread position:5-192
               
               
               Cow position:chr11:4199182-4199374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-194
               
               
               Cow position:chr11:42296708-42296514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 61

               
               
               Conread position:5-194
               
               
               Cow position:chr11:77705665-77705856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):48, 106

               
               
               Conread position:5-195
               
               
               Cow position:chr11:29960205-29960402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:5-195
               
               
               Cow position:chr11:87155429-87155626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:5-196
               
               
               Cow position:chr11:4663136-4662940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):41, 168

               
               
               Conread position:5-196
               
               
               Cow position:chr11:6194317-6194504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):58, 38

               
               
               Conread position:5-196
               
               
               Cow position:chr11:26144186-26143988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:5-196
               
               
               Cow position:chr11:51729197-51729394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-196
               
               
               Cow position:chr11:53816768-53816961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):58, 23

               
               
               Conread position:5-196
               
               
               Cow position:chr11:55744381-55744575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):83, 54

               
               
               Conread position:5-196
               
               
               Cow position:chr11:70600909-70600721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):44, 61

               
               
               Conread position:5-197
               
               
               Cow position:chr11:35536497-35536695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):48, 33

               
               
               Conread position:5-197
               
               
               Cow position:chr11:77745346-77745142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):36, 181

               
               
               Conread position:5-198
               
               
               Cow position:chr11:18588676-18588476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 32

               
               
               Conread position:5-198
               
               
               Cow position:chr11:39060691-39060493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 8

               
               
               Conread position:5-198
               
               
               Cow position:chr11:63482516-63482321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):42, 103

               
               
               Conread position:5-198
               
               
               Cow position:chr11:63920139-63919944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):88, 21

               
               
               Conread position:5-201
               
               
               Cow position:chr11:2933061-2933259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):92, 46

               
               
               Conread position:5-201
               
               
               Cow position:chr11:13043236-13043033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr11:17676461-17676260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):40, 63

               
               
               Conread position:5-201
               
               
               Cow position:chr11:30370017-30370217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:5-201
               
               
               Cow position:chr11:30493908-30494106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):38, 152

               
               
               Conread position:5-201
               
               
               Cow position:chr11:32436241-32436445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):47, 145

               
               
               Conread position:5-201
               
               
               Cow position:chr11:33414147-33414349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):54, 48

               
               
               Conread position:5-201
               
               
               Cow position:chr11:48295940-48296143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):17, 35

               
               
               Conread position:5-201
               
               
               Cow position:chr11:52690612-52690409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):50, 173

               
               
               Conread position:5-201
               
               
               Cow position:chr11:70086238-70086445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):38, 141

               
               
               Conread position:5-201
               
               
               Cow position:chr11:70250828-70251031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:5-201
               
               
               Cow position:chr11:83925960-83926155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:5-202
               
               
               Cow position:chr11:41986134-41985932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):47, 33

               
               
               Conread position:5-204
               
               
               Cow position:chr11:59872841-59873043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 102

               
               
               Conread position:5-206
               
               
               Cow position:chr11:48672623-48672830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr11:8545103-8544899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):48, 66

               
               
               Conread position:5-207
               
               
               Cow position:chr11:13864192-13863985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):38, 53

               
               
               Conread position:5-207
               
               
               Cow position:chr11:13940102-13940305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:5-207
               
               
               Cow position:chr11:37804646-37804435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr11:40459021-40459225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):36, 21

               
               
               Conread position:5-207
               
               
               Cow position:chr11:42016723-42016521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):83, 33

               
               
               Conread position:5-207
               
               
               Cow position:chr11:46998894-46999097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):78, 38

               
               
               Conread position:5-207
               
               
               Cow position:chr11:63435427-63435639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr11:65826832-65826632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):88, 30

               
               
               Conread position:5-208
               
               
               Cow position:chr11:54334243-54334448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):74, 38

               
               
               Conread position:5-208
               
               
               Cow position:chr11:63909750-63909547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):46, 12

               
               
               Conread position:5-208
               
               
               Cow position:chr11:70756391-70756594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):45, 21

               
               
               Conread position:5-209
               
               
               Cow position:chr11:13592646-13592856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):58, 32

               
               
               Conread position:5-209
               
               
               Cow position:chr11:19592081-19591876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):47, 188

               
               
               Conread position:5-209
               
               
               Cow position:chr11:71807661-71807445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):16, 10

               
               
               Conread position:5-209
               
               
               Cow position:chr11:84385726-84385520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:5-212
               
               
               Cow position:chr11:40573423-40573212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 122

               
               
               Conread position:5-212
               
               
               Cow position:chr11:43008396-43008196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):59, 32

               
               
               Conread position:5-213
               
               
               Cow position:chr11:3739862-3740079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-213
               
               
               Cow position:chr11:30954909-30955123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:5-213
               
               
               Cow position:chr11:34145005-34144800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):58, 106

               
               
               Conread position:5-214
               
               
               Cow position:chr11:6245232-6245439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):85, 33

               
               
               Conread position:5-221
               
               
               Cow position:chr11:40478940-40478721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):79, 204

               
               
               Conread position:5-221
               
               
               Cow position:chr11:70278198-70277981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):72, 52

               
               
               Conread position:5-222
               
               
               Cow position:chr11:71168680-71168471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):55, 152

               
               
               Conread position:5-225
               
               
               Cow position:chr11:63847758-63847981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 54

               
               
               Conread position:5-230
               
               
               Cow position:chr11:34032292-34032057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:5-231
               
               
               Cow position:chr11:33348274-33348046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):47, 62

               
               
               Conread position:5-237
               
               
               Cow position:chr11:36658911-36658673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):45, 105

               
               
               Conread position:5-238
               
               
               Cow position:chr11:79728759-79728518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:5-239
               
               
               Cow position:chr11:21852395-21852149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 225

               
               
               Conread position:5-258
               
               
               Cow position:chr11:36238693-36238939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):89, 187

               
               
               Conread position:5-300
               
               
               Cow position:chr11:69075818-69076112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):44, 203

               
               
               Conread position:5-301
               
               
               Cow position:chr11:377734-377440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 184

               
               
               Conread position:5-304
               
               
               Cow position:chr11:16907134-16906848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 41

               
               
               Conread position:5-310
               
               
               Cow position:chr11:26845685-26845380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):33, 177

               
               
               Conread position:5-310
               
               
               Cow position:chr11:83230487-83230181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 58

               
               
               Conread position:5-311
               
               
               Cow position:chr11:14466579-14466266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:224
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):49, 204

               
               
               Conread position:5-311
               
               
               Cow position:chr11:17831311-17831017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 187

               
               
               Conread position:5-311
               
               
               Cow position:chr11:18509107-18508820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:5-311
               
               
               Cow position:chr11:41293908-41293614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):54, 193

               
               
               Conread position:5-311
               
               
               Cow position:chr11:41812002-41811693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):83, 223

               
               
               Conread position:5-311
               
               
               Cow position:chr11:48272107-48272435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-311
               
               
               Cow position:chr11:61181442-61181136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):55, 153

               
               
               Conread position:5-313
               
               
               Cow position:chr11:43430547-43430248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):38, 113

               
               
               Conread position:5-314
               
               
               Cow position:chr11:50072857-50073148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):88, 41

               
               
               Conread position:5-314
               
               
               Cow position:chr11:53511993-53512320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):52, 121

               
               
               Conread position:5-317
               
               
               Cow position:chr11:33310882-33311205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 21

               
               
               Conread position:5-319
               
               
               Cow position:chr11:61958835-61958498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):44, 21

               
               
               Conread position:5-325
               
               
               Cow position:chr11:69119201-69119524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 193

               
               
               Conread position:6-173
               
               
               Cow position:chr11:84490579-84490415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):104, 32

               
               
               Conread position:6-197
               
               
               Cow position:chr11:69977886-69978079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):87, 32

               
               
               Conread position:6-198
               
               
               Cow position:chr11:1067532-1067330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:6-198
               
               
               Cow position:chr11:66188412-66188207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 172

               
               
               Conread position:6-201
               
               
               Cow position:chr11:7590104-7590301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):40, 106

               
               
               Conread position:6-204
               
               
               Cow position:chr11:7460704-7460498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:6-207
               
               
               Cow position:chr11:6233969-6233761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:6-209
               
               
               Cow position:chr11:83066405-83066607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 88

               
               
               Conread position:6-231
               
               
               Cow position:chr11:66518400-66518626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):41, 147

               
               
               Conread position:6-304
               
               
               Cow position:chr11:7013833-7013545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):45, 87

               
               
               Conread position:6-308
               
               
               Cow position:chr11:59702395-59702702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):32, 62

               
               
               Conread position:7-157
               
               
               Cow position:chr11:41176038-41175880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:7-184
               
               
               Cow position:chr11:85191697-85191517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 105

               
               
               Conread position:7-186
               
               
               Cow position:chr11:9221816-9221634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 81

               
               
               Conread position:7-196
               
               
               Cow position:chr11:55761782-55761973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):36, 165

               
               
               Conread position:7-197
               
               
               Cow position:chr11:67600694-67600893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:7-198
               
               
               Cow position:chr11:44031913-44032121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:7-201
               
               
               Cow position:chr11:7385349-7385551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):41, 157

               
               
               Conread position:7-201
               
               
               Cow position:chr11:67804665-67804857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):50, 25

               
               
               Conread position:7-204
               
               
               Cow position:chr11:34113175-34113382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:7-207
               
               
               Cow position:chr11:35926995-35926791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):48, 91

               
               
               Conread position:7-208
               
               
               Cow position:chr11:46746543-46746756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):36, 187

               
               
               Conread position:7-215
               
               
               Cow position:chr11:2084053-2084268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):48, 193

               
               
               Conread position:7-221
               
               
               Cow position:chr11:6202358-6202573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):81, 36

               
               
               Conread position:7-245
               
               
               Cow position:chr11:67246704-67246946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 36

               
               
               Conread position:7-310
               
               
               Cow position:chr11:62778358-62778676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):33, 90

               
               
               Conread position:9-177
               
               
               Cow position:chr11:36986869-36987038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):70, 56

               
               
               Conread position:12-191
               
               
               Cow position:chr11:33409346-33409159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):13, 55

               
               
               Conread position:12-198
               
               
               Cow position:chr11:40608682-40608485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:12-201
               
               
               Cow position:chr11:62742719-62742533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):10, 27

               
               
               Conread position:12-213
               
               
               Cow position:chr11:29699782-29699574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:13-188
               
               
               Cow position:chr11:30934338-30934516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 95

               
               
               Conread position:13-190
               
               
               Cow position:chr11:71009052-71009226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):39, 12

               
               
               Conread position:13-201
               
               
               Cow position:chr11:62813036-62812837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:13-295
               
               
               Cow position:chr11:73924646-73924358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):12, 103

               
               
               Conread position:13-311
               
               
               Cow position:chr11:4430212-4429934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):9, 37

               
               
               Conread position:13-312
               
               
               Cow position:chr11:3282951-3283232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:14-207
               
               
               Cow position:chr11:7924672-7924475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):34, 118

               
               
               Conread position:15-183
               
               
               Cow position:chr11:38334444-38334618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:15-186
               
               
               Cow position:chr11:45742298-45742471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):33, 98

               
               
               Conread position:15-196
               
               
               Cow position:chr11:23272083-23271893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:15-198
               
               
               Cow position:chr11:63065577-63065761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 44

               
               
               Conread position:15-201
               
               
               Cow position:chr11:7874065-7874251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):69, 31

               
               
               Conread position:15-207
               
               
               Cow position:chr11:32254300-32254099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):7, 187

               
               
               Conread position:15-221
               
               
               Cow position:chr11:38577853-38577648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):37, 20

               
               
               Conread position:15-304
               
               
               Cow position:chr11:36635120-36634815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):37, 283

               
               
               Conread position:16-201
               
               
               Cow position:chr11:31875011-31875205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 27

               
               
               Conread position:17-201
               
               
               Cow position:chr11:83397827-83398018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:17-204
               
               
               Cow position:chr11:19247278-19247084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:17-204
               
               
               Cow position:chr11:78381136-78380949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):35, 10

               
               
               Conread position:17-267
               
               
               Cow position:chr11:17574412-17574176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):32, 53

               
               
               Conread position:17-307
               
               
               Cow position:chr11:79019140-79018824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:19-188
               
               
               Cow position:chr11:53510578-53510403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):27, 98

               
               
               Conread position:19-204
               
               
               Cow position:chr11:40395361-40395556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:19-206
               
               
               Cow position:chr11:60470253-60470081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):68, 24

               
               
               Conread position:19-207
               
               
               Cow position:chr11:46747941-46747742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):29, 16

               
               
               Conread position:19-207
               
               
               Cow position:chr11:71868680-71868484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:19-210
               
               
               Cow position:chr11:33526976-33527174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:19-221
               
               
               Cow position:chr11:18785948-18785745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):34, 80

               
               
               Conread position:20-183
               
               
               Cow position:chr11:76606600-76606767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:20-187
               
               
               Cow position:chr11:40792783-40792606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:20-188
               
               
               Cow position:chr11:36112350-36112518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):32, 86

               
               
               Conread position:20-189
               
               
               Cow position:chr11:8988302-8988131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):35, 23

               
               
               Conread position:20-189
               
               
               Cow position:chr11:9270801-9270626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):38, 147

               
               
               Conread position:20-195
               
               
               Cow position:chr11:80530293-80530465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):35, 74

               
               
               Conread position:20-196
               
               
               Cow position:chr11:41313732-41313551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):32, 23

               
               
               Conread position:20-196
               
               
               Cow position:chr11:84890796-84890612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):29, 125

               
               
               Conread position:20-197
               
               
               Cow position:chr11:18698802-18698985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 169

               
               
               Conread position:20-198
               
               
               Cow position:chr11:22977946-22977765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):73, 149

               
               
               Conread position:20-198
               
               
               Cow position:chr11:47004269-47004455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 140

               
               
               Conread position:20-200
               
               
               Cow position:chr11:49057327-49057503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):43, 78

               
               
               Conread position:20-201
               
               
               Cow position:chr11:65495401-65495227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):88, 23

               
               
               Conread position:20-203
               
               
               Cow position:chr11:53778540-53778729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):29, 169

               
               
               Conread position:20-205
               
               
               Cow position:chr11:72870825-72871022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-206
               
               
               Cow position:chr11:2344179-2344370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):73, 42

               
               
               Conread position:20-207
               
               
               Cow position:chr11:15772790-15772596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):11, 180

               
               
               Conread position:20-207
               
               
               Cow position:chr11:38236176-38236370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:20-208
               
               
               Cow position:chr11:82289499-82289698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):19, 102

               
               
               Conread position:20-209
               
               
               Cow position:chr11:58588271-58588465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):44, 23

               
               
               Conread position:20-213
               
               
               Cow position:chr11:4207236-4207433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):27, 151

               
               
               Conread position:20-214
               
               
               Cow position:chr11:48474628-48474829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:20-217
               
               
               Cow position:chr11:27565260-27565458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):32, 112

               
               
               Conread position:20-229
               
               
               Cow position:chr11:84228788-84228579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 17

               
               
               Conread position:20-234
               
               
               Cow position:chr11:70825875-70826094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:20-235
               
               
               Cow position:chr11:71341541-71341318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-237
               
               
               Cow position:chr11:5789966-5789751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):66, 30

               
               
               Conread position:20-307
               
               
               Cow position:chr11:22747405-22747122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):28, 10

               
               
               Conread position:20-309
               
               
               Cow position:chr11:15072781-15073083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 18

               
               
               Conread position:20-311
               
               
               Cow position:chr11:36848852-36849147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):32, 54

               
               
               Conread position:21-184
               
               
               Cow position:chr11:64048331-64048499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:21-197
               
               
               Cow position:chr11:51196153-51195974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 61

               
               
               Conread position:21-204
               
               
               Cow position:chr11:39462547-39462739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:21-204
               
               
               Cow position:chr11:64104922-64105113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 60

               
               
               Conread position:21-205
               
               
               Cow position:chr11:10095271-10095460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:21-214
               
               
               Cow position:chr11:59024428-59024235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:21-221
               
               
               Cow position:chr11:48232748-48232961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 17

               
               
               Conread position:22-184
               
               
               Cow position:chr11:1157573-1157739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:22-207
               
               
               Cow position:chr11:50472244-50472435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 16

               
               
               Conread position:23-207
               
               
               Cow position:chr11:41215670-41215851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):67, 20

               
               
               Conread position:23-214
               
               
               Cow position:chr11:34962992-34963197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):34, 102

               
               
               Conread position:24-188
               
               
               Cow position:chr11:82940693-82940525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):19, 52

               
               
               Conread position:24-189
               
               
               Cow position:chr11:3234012-3234176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):55, 26

               
               
               Conread position:24-201
               
               
               Cow position:chr11:36920651-36920463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):22, 166

               
               
               Conread position:24-209
               
               
               Cow position:chr11:35573560-35573371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:24-213
               
               
               Cow position:chr11:47837246-47837442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):26, 176

               
               
               Conread position:25-201
               
               
               Cow position:chr11:57608527-57608350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):22, 90

               
               
               Conread position:26-202
               
               
               Cow position:chr11:17559074-17559242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):64, 11

               
               
               Conread position:26-207
               
               
               Cow position:chr11:63202319-63202130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):28, 12

               
               
               Conread position:27-301
               
               
               Cow position:chr11:10363457-10363168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):24, 11

               
               
               Conread position:28-165
               
               
               Cow position:chr11:71482311-71482456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:29-196
               
               
               Cow position:chr11:71935021-71934849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 140

               
               
               Conread position:29-207
               
               
               Cow position:chr11:3714763-3714939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:32-239
               
               
               Cow position:chr11:13499952-13500173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:32-307
               
               
               Cow position:chr11:6633653-6633912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):55, 11

               
               
               Conread position:33-184
               
               
               Cow position:chr11:16320228-16320379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):54, 24

               
               
               Conread position:34-188
               
               
               Cow position:chr11:64090156-64089998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 145

               
               
               Conread position:34-201
               
               
               Cow position:chr11:68173475-68173643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):52, 9

               
               
               Conread position:34-205
               
               
               Cow position:chr11:69168530-69168703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):59, 16

               
               
               Conread position:34-208
               
               
               Cow position:chr11:35352095-35351921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:35-304
               
               
               Cow position:chr11:69307456-69307713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):53, 160

               
               
               Conread position:35-309
               
               
               Cow position:chr11:34692799-34693065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):55, 10

               
               
               Conread position:36-207
               
               
               Cow position:chr11:30209877-30209704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):14, 78

               
               
               Conread position:36-309
               
               
               Cow position:chr11:62609549-62609827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):43, 10

               
               
               Conread position:37-176
               
               
               Cow position:chr11:48512110-48512251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):51, 27

               
               
               Conread position:37-189
               
               
               Cow position:chr11:1362524-1362367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:38-201
               
               
               Cow position:chr11:29659502-29659673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:38-202
               
               
               Cow position:chr11:42160108-42159944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):55, 143

               
               
               Conread position:39-189
               
               
               Cow position:chr11:41809547-41809392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:39-197
               
               
               Cow position:chr11:62663285-62663126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:40-196
               
               
               Cow position:chr11:5219214-5219053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):19, 65

               
               
               Conread position:41-194
               
               
               Cow position:chr11:39249918-39250078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):18, 117

               
               
               Conread position:41-202
               
               
               Cow position:chr11:27913233-27913399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:41-222
               
               
               Cow position:chr11:29946965-29946778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:42-149
               
               
               Cow position:chr11:65624842-65624733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 15

               
               
               Conread position:43-201
               
               
               Cow position:chr11:48659884-48660047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:43-317
               
               
               Cow position:chr11:17321599-17321866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):50, 10

               
               
               Conread position:44-197
               
               
               Cow position:chr11:33697592-33697745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):8, 95

               
               
               Conread position:45-195
               
               
               Cow position:chr11:77013738-77013887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):64, 12

               
               
               Conread position:45-197
               
               
               Cow position:chr11:84977407-84977250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):7, 154

               
               
               Conread position:45-213
               
               
               Cow position:chr11:71110843-71111014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):8, 151

               
               
               Conread position:45-313
               
               
               Cow position:chr11:62754366-62754106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):46, 145

               
               
               Conread position:46-188
               
               
               Cow position:chr11:62811252-62811396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 11

               
               
               Conread position:46-195
               
               
               Cow position:chr11:62155591-62155745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:46-197
               
               
               Cow position:chr11:17227688-17227536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:46-197
               
               
               Cow position:chr11:63484900-63485046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):64, 32

               
               
               Conread position:46-214
               
               
               Cow position:chr11:15382549-15382377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:46-220
               
               
               Cow position:chr11:70483901-70483721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 141

               
               
               Conread position:46-299
               
               
               Cow position:chr11:41452044-41451800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 73

               
               
               Conread position:46-307
               
               
               Cow position:chr11:61454560-61454317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):47, 152

               
               
               Conread position:47-213
               
               
               Cow position:chr11:44016929-44017099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:47-223
               
               
               Cow position:chr11:77128616-77128793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 10

               
               
               Conread position:47-237
               
               
               Cow position:chr11:28644043-28644236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):46, 19

               
               
               Conread position:48-204
               
               
               Cow position:chr11:35670000-35669837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):15, 106

               
               
               Conread position:50-189
               
               
               Cow position:chr11:32691013-32690870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:50-198
               
               
               Cow position:chr11:66041243-66041388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):60, 9

               
               
               Conread position:51-201
               
               
               Cow position:chr11:62889935-62889781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:51-202
               
               
               Cow position:chr11:897632-897786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 133

               
               
               Conread position:51-253
               
               
               Cow position:chr11:71345365-71345156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 192

               
               
               Conread position:52-195
               
               
               Cow position:chr11:78820111-78820256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):39, 67

               
               
               Conread position:52-319
               
               
               Cow position:chr11:2832722-2832459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):142, 42

               
               
               Conread position:53-207
               
               
               Cow position:chr11:32260495-32260647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):34, 92

               
               
               Conread position:54-188
               
               
               Cow position:chr11:30787185-30787323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:54-207
               
               
               Cow position:chr11:46427446-46427287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:57-174
               
               
               Cow position:chr11:34106705-34106584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:57-201
               
               
               Cow position:chr11:30925121-30925267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):28, 99

               
               
               Conread position:57-204
               
               
               Cow position:chr11:39855049-39854902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 48

               
               
               Conread position:57-207
               
               
               Cow position:chr11:34136208-34136359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:57-207
               
               
               Cow position:chr11:35109573-35109420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):36, 100

               
               
               Conread position:57-214
               
               
               Cow position:chr11:29786534-29786375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):36, 133

               
               
               Conread position:57-228
               
               
               Cow position:chr11:18587631-18587453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-234
               
               
               Cow position:chr11:58173590-58173770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):36, 62

               
               
               Conread position:57-255
               
               
               Cow position:chr11:21910662-21910461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 127

               
               
               Conread position:57-256
               
               
               Cow position:chr11:56290476-56290679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):22, 184

               
               
               Conread position:57-304
               
               
               Cow position:chr11:58938780-58938533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 153

               
               
               Conread position:57-309
               
               
               Cow position:chr11:82731033-82730796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):36, 138

               
               
               Conread position:57-311
               
               
               Cow position:chr11:53717842-53717600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):34, 138

               
               
               Conread position:58-204
               
               
               Cow position:chr11:81931146-81931001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):49, 35

               
               
               Conread position:58-309
               
               
               Cow position:chr11:30888317-30888070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:59-198
               
               
               Cow position:chr11:34968647-34968503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 79

               
               
               Conread position:61-196
               
               
               Cow position:chr11:69415628-69415491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:61-197
               
               
               Cow position:chr11:63382222-63382082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:61-204
               
               
               Cow position:chr11:64408945-64409086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):30, 44

               
               
               Conread position:61-206
               
               
               Cow position:chr11:62168362-62168214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):32, 107

               
               
               Conread position:61-207
               
               
               Cow position:chr11:69417372-69417520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:61-221
               
               
               Cow position:chr11:67312749-67312913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:62-189
               
               
               Cow position:chr11:37436017-37435887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:62-196
               
               
               Cow position:chr11:66939623-66939485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:62-311
               
               
               Cow position:chr11:47882773-47883013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):32, 133

               
               
               Conread position:63-194
               
               
               Cow position:chr11:17768457-17768589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:64-188
               
               
               Cow position:chr11:9698874-9698998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):29, 41

               
               
               Conread position:64-194
               
               
               Cow position:chr11:48063829-48063695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:64-205
               
               
               Cow position:chr11:43914263-43914410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:64-304
               
               
               Cow position:chr11:83579204-83578963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):31, 207

               
               
               Conread position:67-183
               
               
               Cow position:chr11:32782909-32782789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:70-251
               
               
               Cow position:chr11:25783690-25783875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 153

               
               
               Conread position:71-186
               
               
               Cow position:chr11:46452119-46452233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 7

               
               
               Conread position:72-194
               
               
               Cow position:chr11:15683000-15682874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:72-207
               
               
               Cow position:chr11:46884353-46884492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:72-292
               
               
               Cow position:chr11:68975124-68975359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 33

               
               
               Conread position:72-309
               
               
               Cow position:chr11:84775054-84775279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):21, 96

               
               
               Conread position:73-188
               
               
               Cow position:chr11:15366990-15366873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:74-204
               
               
               Cow position:chr11:86895360-86895492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:74-217
               
               
               Cow position:chr11:30805149-30805007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):36, 101

               
               
               Conread position:75-207
               
               
               Cow position:chr11:18792085-18791946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:75-207
               
               
               Cow position:chr11:60486434-60486298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:76-317
               
               
               Cow position:chr11:87172091-87171856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):11, 116

               
               
               Conread position:78-201
               
               
               Cow position:chr11:77241694-77241817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:79-196
               
               
               Cow position:chr11:62808517-62808399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):8, 45

               
               
               Conread position:79-209
               
               
               Cow position:chr11:17517387-17517519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-223
               
               
               Cow position:chr11:29983728-29983584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 61

               
               
               Conread position:79-241
               
               
               Cow position:chr11:65843085-65842918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):8, 50

               
               
               Conread position:79-301
               
               
               Cow position:chr11:74378863-74379073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):8, 115

               
               
               Conread position:79-304
               
               
               Cow position:chr11:37982587-37982364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 8

               
               
               Conread position:79-304
               
               
               Cow position:chr11:70709772-70709994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):8, 130

               
               
               Conread position:79-323
               
               
               Cow position:chr11:73984015-73983787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):8, 90

               
               
               Conread position:80-207
               
               
               Cow position:chr11:60296718-60296848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:82-207
               
               
               Cow position:chr11:2835851-2835977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:86-198
               
               
               Cow position:chr11:71767598-71767711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:87-215
               
               
               Cow position:chr11:81614516-81614389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 117

               
               
               Conread position:87-228
               
               
               Cow position:chr11:70517596-70517455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:88-201
               
               
               Cow position:chr11:60720457-60720343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:88-208
               
               
               Cow position:chr11:49396527-49396406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:88-291
               
               
               Cow position:chr11:45437277-45437478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 138

               
               
               Conread position:88-304
               
               
               Cow position:chr11:81605857-81606061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:88-311
               
               
               Cow position:chr11:59916144-59916359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:89-223
               
               
               Cow position:chr11:4436747-4436882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:90-312
               
               
               Cow position:chr11:42067054-42067281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):24, 165

               
               
               Conread position:92-195
               
               
               Cow position:chr11:80586277-80586381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:92-222
               
               
               Cow position:chr11:35860585-35860713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:92-312
               
               
               Cow position:chr11:61178360-61178581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):18, 149

               
               
               Conread position:95-310
               
               
               Cow position:chr11:56895969-56895743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):15, 67

               
               
               Conread position:96-223
               
               
               Cow position:chr11:63199538-63199667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:97-311
               
               
               Cow position:chr11:70513595-70513805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):13, 94

               
               
               Conread position:98-316
               
               
               Cow position:chr11:21817050-21816838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):144, 18

               
               
               Conread position:99-207
               
               
               Cow position:chr11:68570371-68570263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):11, 82

               
               
               Conread position:100-209
               
               
               Cow position:chr11:78780848-78780738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:100-317
               
               
               Cow position:chr11:71443229-71443027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):10, 52

               
               
               Conread position:109-300
               
               
               Cow position:chr11:35073573-35073389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:109-312
               
               
               Cow position:chr11:34623191-34623405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:167
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:109-312
               
               
               Cow position:chr11:75246369-75246562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):193, 12

               
               
               Conread position:110-304
               
               
               Cow position:chr11:13843469-13843656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:121-300
               
               
               Cow position:chr11:10078666-10078834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:122-296
               
               
               Cow position:chr11:2864037-2864198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:126-304
               
               
               Cow position:chr11:55243560-55243380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):76, 116

               
               
               Conread position:127-234
               
               
               Cow position:chr11:36128443-36128550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:128-310
               
               
               Cow position:chr11:80600957-80601143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):84, 118

               
               
               Conread position:130-310
               
               
               Cow position:chr11:63549868-63550044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):109, 72

               
               
               Conread position:137-304
               
               
               Cow position:chr11:48932575-48932406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):19, 53

               
               
               Conread position:1-166
               
               
               Cow position:chr12:19664645-19664475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):21, 43

               
               
               Conread position:1-184
               
               
               Cow position:chr12:46314820-46314629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:1-187
               
               
               Cow position:chr12:24116480-24116285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:1-189
               
               
               Cow position:chr12:5940225-5940424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:1-189
               
               
               Cow position:chr12:30210365-30210563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1-189
               
               
               Cow position:chr12:31517290-31517092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):21, 190

               
               
               Conread position:1-194
               
               
               Cow position:chr12:6410849-6410649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):58, 42

               
               
               Conread position:1-195
               
               
               Cow position:chr12:6210275-6210071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:1-197
               
               
               Cow position:chr12:3197153-3197356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-198
               
               
               Cow position:chr12:10942168-10942376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):18, 39

               
               
               Conread position:1-201
               
               
               Cow position:chr12:35123771-35123981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-201
               
               
               Cow position:chr12:35771142-35770929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:1-201
               
               
               Cow position:chr12:40910406-40910194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):51, 176

               
               
               Conread position:1-205
               
               
               Cow position:chr12:3599875-3599664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):18, 52

               
               
               Conread position:1-205
               
               
               Cow position:chr12:5635564-5635357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):85, 42

               
               
               Conread position:1-206
               
               
               Cow position:chr12:3950462-3950251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):60, 188

               
               
               Conread position:1-206
               
               
               Cow position:chr12:13643118-13643329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr12:27563500-27563281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):18, 194

               
               
               Conread position:1-207
               
               
               Cow position:chr12:41159471-41159685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):20, 6

               
               
               Conread position:1-209
               
               
               Cow position:chr12:19400933-19400721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):21, 13

               
               
               Conread position:1-209
               
               
               Cow position:chr12:38184482-38184696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):44, 54

               
               
               Conread position:1-214
               
               
               Cow position:chr12:8943335-8943117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):63, 31

               
               
               Conread position:1-215
               
               
               Cow position:chr12:18577723-18577949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):47, 35

               
               
               Conread position:1-304
               
               
               Cow position:chr12:11090304-11090605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):12, 69

               
               
               Conread position:2-187
               
               
               Cow position:chr12:36790927-36790734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):20, 46

               
               
               Conread position:3-189
               
               
               Cow position:chr12:21922337-21922532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):45, 20

               
               
               Conread position:3-192
               
               
               Cow position:chr12:39465461-39465663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:3-194
               
               
               Cow position:chr12:17774678-17774879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:3-197
               
               
               Cow position:chr12:7977922-7978125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:4-188
               
               
               Cow position:chr12:42285855-42286050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:4-196
               
               
               Cow position:chr12:10895670-10895466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:4-204
               
               
               Cow position:chr12:18583105-18582898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:5-140
               
               
               Cow position:chr12:37137634-37137495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):31, 85

               
               
               Conread position:5-173
               
               
               Cow position:chr12:8868988-8868818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):47, 91

               
               
               Conread position:5-173
               
               
               Cow position:chr12:18964038-18963864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:5-178
               
               
               Cow position:chr12:42174309-42174485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):41, 58

               
               
               Conread position:5-179
               
               
               Cow position:chr12:23855726-23855902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 110

               
               
               Conread position:5-183
               
               
               Cow position:chr12:24211301-24211481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):44, 92

               
               
               Conread position:5-184
               
               
               Cow position:chr12:19691345-19691159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 113

               
               
               Conread position:5-184
               
               
               Cow position:chr12:31429681-31429496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):50, 38

               
               
               Conread position:5-186
               
               
               Cow position:chr12:9146838-9147017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):85, 32

               
               
               Conread position:5-186
               
               
               Cow position:chr12:31948007-31948189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):47, 31

               
               
               Conread position:5-186
               
               
               Cow position:chr12:42602353-42602167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):41, 165

               
               
               Conread position:5-187
               
               
               Cow position:chr12:46333239-46333422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):58, 38

               
               
               Conread position:5-188
               
               
               Cow position:chr12:44733203-44733013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):50, 32

               
               
               Conread position:5-189
               
               
               Cow position:chr12:13988260-13988449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:5-189
               
               
               Cow position:chr12:18943769-18943578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr12:38126638-38126444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr12:46714262-46714449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 31

               
               
               Conread position:5-190
               
               
               Cow position:chr12:30438130-30438318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):46, 106

               
               
               Conread position:5-191
               
               
               Cow position:chr12:47804043-47804237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 137

               
               
               Conread position:5-192
               
               
               Cow position:chr12:34466118-34465920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-193
               
               
               Cow position:chr12:28582615-28582426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):54, 103

               
               
               Conread position:5-195
               
               
               Cow position:chr12:44517847-44517652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-196
               
               
               Cow position:chr12:15173714-15173910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):48, 21

               
               
               Conread position:5-196
               
               
               Cow position:chr12:22485707-22485893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:5-198
               
               
               Cow position:chr12:22540093-22540296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):16, 48

               
               
               Conread position:5-198
               
               
               Cow position:chr12:23797992-23798188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 108

               
               
               Conread position:5-198
               
               
               Cow position:chr12:33323606-33323406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr12:11056763-11056966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):50, 33

               
               
               Conread position:5-201
               
               
               Cow position:chr12:15122211-15122418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr12:16056971-16056766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr12:28257160-28256963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):76, 32

               
               
               Conread position:5-201
               
               
               Cow position:chr12:30805743-30805950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:5-201
               
               
               Cow position:chr12:33976089-33976292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:5-204
               
               
               Cow position:chr12:26217937-26217728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:5-205
               
               
               Cow position:chr12:7884793-7884585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):48, 33

               
               
               Conread position:5-206
               
               
               Cow position:chr12:19258168-19258373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):48, 115

               
               
               Conread position:5-207
               
               
               Cow position:chr12:15050728-15050527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):58, 107

               
               
               Conread position:5-207
               
               
               Cow position:chr12:24152226-24152437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 185

               
               
               Conread position:5-207
               
               
               Cow position:chr12:30590656-30590864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):88, 180

               
               
               Conread position:5-207
               
               
               Cow position:chr12:34007194-34007398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 91

               
               
               Conread position:5-208
               
               
               Cow position:chr12:4341851-4341645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):16, 12

               
               
               Conread position:5-208
               
               
               Cow position:chr12:12300810-12301017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):84, 40

               
               
               Conread position:5-208
               
               
               Cow position:chr12:25561259-25561468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):47, 33

               
               
               Conread position:5-209
               
               
               Cow position:chr12:9914678-9914889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:5-209
               
               
               Cow position:chr12:37993834-37993634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):87, 46

               
               
               Conread position:5-213
               
               
               Cow position:chr12:7110089-7110301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:5-213
               
               
               Cow position:chr12:29995571-29995357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):46, 33

               
               
               Conread position:5-214
               
               
               Cow position:chr12:4596354-4596569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:5-215
               
               
               Cow position:chr12:24222629-24222414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):41, 14

               
               
               Conread position:5-223
               
               
               Cow position:chr12:5905943-5906171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):49, 217

               
               
               Conread position:5-226
               
               
               Cow position:chr12:11836120-11836352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:5-228
               
               
               Cow position:chr12:41581007-41581229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):82, 52

               
               
               Conread position:5-237
               
               
               Cow position:chr12:30753612-30753842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):74, 178

               
               
               Conread position:5-238
               
               
               Cow position:chr12:2711385-2711628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 231

               
               
               Conread position:5-239
               
               
               Cow position:chr12:11109655-11109885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):83, 33

               
               
               Conread position:5-247
               
               
               Cow position:chr12:29969469-29969717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):38, 27

               
               
               Conread position:5-267
               
               
               Cow position:chr12:25320811-25321079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):48, 33

               
               
               Conread position:5-303
               
               
               Cow position:chr12:31959776-31960065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 45

               
               
               Conread position:5-304
               
               
               Cow position:chr12:3906362-3906690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):53, 103

               
               
               Conread position:5-304
               
               
               Cow position:chr12:29780016-29779717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 22

               
               
               Conread position:5-308
               
               
               Cow position:chr12:29770684-29770387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):57, 92

               
               
               Conread position:5-308
               
               
               Cow position:chr12:45820479-45820162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-309
               
               
               Cow position:chr12:22881942-22882247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):9, 178

               
               
               Conread position:5-310
               
               
               Cow position:chr12:15163039-15163324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:5-310
               
               
               Cow position:chr12:27037562-27037249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):57, 245

               
               
               Conread position:5-311
               
               
               Cow position:chr12:6720212-6720516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):49, 181

               
               
               Conread position:5-311
               
               
               Cow position:chr12:44919923-44920226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:226
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):59, 140

               
               
               Conread position:5-311
               
               
               Cow position:chr12:46120941-46120650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:5-318
               
               
               Cow position:chr12:5658180-5657846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):83, 38

               
               
               Conread position:5-323
               
               
               Cow position:chr12:7000715-7000403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 12

               
               
               Conread position:6-198
               
               
               Cow position:chr12:33851248-33851446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):40, 105

               
               
               Conread position:6-209
               
               
               Cow position:chr12:23836211-23836430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:6-299
               
               
               Cow position:chr12:18766088-18765789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):29, 186

               
               
               Conread position:6-310
               
               
               Cow position:chr12:18523453-18523751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):40, 197

               
               
               Conread position:7-148
               
               
               Cow position:chr12:25529973-25530115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):86, 36

               
               
               Conread position:7-184
               
               
               Cow position:chr12:34161307-34161488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):52, 31

               
               
               Conread position:7-188
               
               
               Cow position:chr12:17671327-17671509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):52, 43

               
               
               Conread position:7-189
               
               
               Cow position:chr12:15699963-15700160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):27, 149

               
               
               Conread position:7-204
               
               
               Cow position:chr12:3623585-3623789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:7-204
               
               
               Cow position:chr12:38774348-38774147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):86, 53

               
               
               Conread position:7-311
               
               
               Cow position:chr12:34473733-34473440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):39, 89

               
               
               Conread position:9-201
               
               
               Cow position:chr12:4866713-4866909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):11, 28

               
               
               Conread position:12-139
               
               
               Cow position:chr12:18420365-18420500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:12-189
               
               
               Cow position:chr12:24023901-24023722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):74, 17

               
               
               Conread position:12-207
               
               
               Cow position:chr12:21780058-21780259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):10, 49

               
               
               Conread position:13-187
               
               
               Cow position:chr12:42233951-42234137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):9, 167

               
               
               Conread position:13-188
               
               
               Cow position:chr12:35241208-35241027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):9, 39

               
               
               Conread position:13-201
               
               
               Cow position:chr12:41473984-41474181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:13-303
               
               
               Cow position:chr12:14131870-14131593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:13-304
               
               
               Cow position:chr12:25444819-25445098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:225
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):16, 36

               
               
               Conread position:14-200
               
               
               Cow position:chr12:30194604-30194792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:14-212
               
               
               Cow position:chr12:7960686-7960483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):36, 138

               
               
               Conread position:15-162
               
               
               Cow position:chr12:25452548-25452394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):48, 28

               
               
               Conread position:15-187
               
               
               Cow position:chr12:14222875-14223059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:16-204
               
               
               Cow position:chr12:23446620-23446815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:19-198
               
               
               Cow position:chr12:40200606-40200786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):33, 92

               
               
               Conread position:20-165
               
               
               Cow position:chr12:9894688-9894838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:20-167
               
               
               Cow position:chr12:10491174-10491330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):28, 109

               
               
               Conread position:20-174
               
               
               Cow position:chr12:17716978-17717127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):74, 42

               
               
               Conread position:20-185
               
               
               Cow position:chr12:45680184-45680353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:20-196
               
               
               Cow position:chr12:23916747-23916929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):29, 91

               
               
               Conread position:20-197
               
               
               Cow position:chr12:44595907-44595722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:20-198
               
               
               Cow position:chr12:5609607-5609423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):31, 73

               
               
               Conread position:20-201
               
               
               Cow position:chr12:19697306-19697489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):28, 52

               
               
               Conread position:20-204
               
               
               Cow position:chr12:4954734-4954919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):30, 15

               
               
               Conread position:20-204
               
               
               Cow position:chr12:11587677-11587869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-204
               
               
               Cow position:chr12:22515831-22515640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):22, 141

               
               
               Conread position:20-204
               
               
               Cow position:chr12:37008800-37008612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):32, 95

               
               
               Conread position:20-204
               
               
               Cow position:chr12:48415612-48415421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):29, 72

               
               
               Conread position:20-206
               
               
               Cow position:chr12:29675235-29675045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr12:25188090-25188285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 179

               
               
               Conread position:20-207
               
               
               Cow position:chr12:25280600-25280407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):28, 170

               
               
               Conread position:20-207
               
               
               Cow position:chr12:30662043-30661854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):28, 13

               
               
               Conread position:20-207
               
               
               Cow position:chr12:35368545-35368740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr12:36501042-36500852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 46

               
               
               Conread position:20-207
               
               
               Cow position:chr12:42254571-42254764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):26, 36

               
               
               Conread position:20-209
               
               
               Cow position:chr12:31269054-31269253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):28, 169

               
               
               Conread position:20-209
               
               
               Cow position:chr12:42966903-42967092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):28, 77

               
               
               Conread position:20-214
               
               
               Cow position:chr12:19866146-19866345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:20-221
               
               
               Cow position:chr12:34165491-34165694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:20-311
               
               
               Cow position:chr12:39382515-39382788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):67, 17

               
               
               Conread position:21-221
               
               
               Cow position:chr12:31883249-31883449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):66, 43

               
               
               Conread position:22-204
               
               
               Cow position:chr12:37514377-37514187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 157

               
               
               Conread position:23-232
               
               
               Cow position:chr12:7299554-7299334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):40, 15

               
               
               Conread position:23-244
               
               
               Cow position:chr12:6687798-6688030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 23

               
               
               Conread position:24-196
               
               
               Cow position:chr12:26750051-26749865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:24-204
               
               
               Cow position:chr12:18103703-18103519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):24, 162

               
               
               Conread position:24-208
               
               
               Cow position:chr12:42749348-42749537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:26-192
               
               
               Cow position:chr12:3615910-3616081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):23, 71

               
               
               Conread position:28-198
               
               
               Cow position:chr12:42181214-42181040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:29-183
               
               
               Cow position:chr12:4134990-4135151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:29-186
               
               
               Cow position:chr12:29483970-29483810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):12, 22

               
               
               Conread position:30-189
               
               
               Cow position:chr12:17252280-17252119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):71, 32

               
               
               Conread position:31-209
               
               
               Cow position:chr12:25809345-25809529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:31-311
               
               
               Cow position:chr12:3880066-3879785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:213
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):32, 221

               
               
               Conread position:32-222
               
               
               Cow position:chr12:42698316-42698133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:33-201
               
               
               Cow position:chr12:13911662-13911481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:34-188
               
               
               Cow position:chr12:40158102-40157946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):15, 98

               
               
               Conread position:35-202
               
               
               Cow position:chr12:4719870-4720040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):58, 22

               
               
               Conread position:35-207
               
               
               Cow position:chr12:6241238-6241417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:36-195
               
               
               Cow position:chr12:37255947-37256099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:37-188
               
               
               Cow position:chr12:18518600-18518752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):56, 13

               
               
               Conread position:37-214
               
               
               Cow position:chr12:24663034-24663216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):16, 151

               
               
               Conread position:38-189
               
               
               Cow position:chr12:45090427-45090272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):20, 93

               
               
               Conread position:38-200
               
               
               Cow position:chr12:4768849-4769017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:38-207
               
               
               Cow position:chr12:7457619-7457447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:38-288
               
               
               Cow position:chr12:4793122-4793376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):52, 193

               
               
               Conread position:39-196
               
               
               Cow position:chr12:16341819-16341978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):54, 114

               
               
               Conread position:40-198
               
               
               Cow position:chr12:29057315-29057478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:40-222
               
               
               Cow position:chr12:42162974-42163155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):151, 29

               
               
               Conread position:43-209
               
               
               Cow position:chr12:29966036-29966200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):9, 68

               
               
               Conread position:46-198
               
               
               Cow position:chr12:6754130-6754285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):42, 18

               
               
               Conread position:46-201
               
               
               Cow position:chr12:3371919-3371767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 13

               
               
               Conread position:46-207
               
               
               Cow position:chr12:9514295-9514459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 16

               
               
               Conread position:46-209
               
               
               Cow position:chr12:32753446-32753614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:46-304
               
               
               Cow position:chr12:45168085-45167847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:46-309
               
               
               Cow position:chr12:36994183-36993927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):45, 149

               
               
               Conread position:47-196
               
               
               Cow position:chr12:45092381-45092533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):46, 17

               
               
               Conread position:47-201
               
               
               Cow position:chr12:15260698-15260853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 15

               
               
               Conread position:47-207
               
               
               Cow position:chr12:45002132-45001970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):40, 10

               
               
               Conread position:48-207
               
               
               Cow position:chr12:6188182-6188014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:49-193
               
               
               Cow position:chr12:38155134-38154987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):41, 13

               
               
               Conread position:49-196
               
               
               Cow position:chr12:34195773-34195623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):8, 65

               
               
               Conread position:51-178
               
               
               Cow position:chr12:15389009-15389140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:57-171
               
               
               Cow position:chr12:43691472-43691354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-186
               
               
               Cow position:chr12:43354179-43354051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):54, 29

               
               
               Conread position:57-193
               
               
               Cow position:chr12:9229556-9229417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):22, 136

               
               
               Conread position:57-196
               
               
               Cow position:chr12:47267365-47267222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:57-198
               
               
               Cow position:chr12:31532456-31532315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):37, 50

               
               
               Conread position:57-208
               
               
               Cow position:chr12:24181093-24181245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 36

               
               
               Conread position:57-208
               
               
               Cow position:chr12:39663256-39663102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 127

               
               
               Conread position:57-217
               
               
               Cow position:chr12:12912993-12912832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 48

               
               
               Conread position:57-223
               
               
               Cow position:chr12:7920186-7920353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):36, 139

               
               
               Conread position:57-270
               
               
               Cow position:chr12:4797244-4797473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-300
               
               
               Cow position:chr12:32419427-32419188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 107

               
               
               Conread position:57-304
               
               
               Cow position:chr12:22894114-22894364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:192
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):36, 112

               
               
               Conread position:57-310
               
               
               Cow position:chr12:3675583-3675347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):34, 102

               
               
               Conread position:58-209
               
               
               Cow position:chr12:25355809-25355658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 135

               
               
               Conread position:59-202
               
               
               Cow position:chr12:26147223-26147078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):30, 7

               
               
               Conread position:61-310
               
               
               Cow position:chr12:23764442-23764666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:62-189
               
               
               Cow position:chr12:9439502-9439372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 78

               
               
               Conread position:63-207
               
               
               Cow position:chr12:12532541-12532394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):27, 105

               
               
               Conread position:65-336
               
               
               Cow position:chr12:45723268-45723539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):26, 40

               
               
               Conread position:66-195
               
               
               Cow position:chr12:43854847-43854979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:66-201
               
               
               Cow position:chr12:22859420-22859555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):13, 47

               
               
               Conread position:66-207
               
               
               Cow position:chr12:26868860-26868716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:66-209
               
               
               Cow position:chr12:24437682-24437535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:67-200
               
               
               Cow position:chr12:23105891-23106026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):26, 127

               
               
               Conread position:67-310
               
               
               Cow position:chr12:5543839-5543601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):26, 45

               
               
               Conread position:69-198
               
               
               Cow position:chr12:1701849-1701716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:69-201
               
               
               Cow position:chr12:3586074-3586210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:69-304
               
               
               Cow position:chr12:2661458-2661206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:71-215
               
               
               Cow position:chr12:26357411-26357266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):16, 109

               
               
               Conread position:71-301
               
               
               Cow position:chr12:6226186-6225963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):22, 42

               
               
               Conread position:72-204
               
               
               Cow position:chr12:44542225-44542361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:72-307
               
               
               Cow position:chr12:40270103-40269867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):21, 33

               
               
               Conread position:75-196
               
               
               Cow position:chr12:11106615-11106494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:76-207
               
               
               Cow position:chr12:39150089-39149954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:78-204
               
               
               Cow position:chr12:25417603-25417476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):9, 74

               
               
               Conread position:79-207
               
               
               Cow position:chr12:24397195-24397067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):8, 53

               
               
               Conread position:79-214
               
               
               Cow position:chr12:22752595-22752727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 9

               
               
               Conread position:79-223
               
               
               Cow position:chr12:28651079-28651227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):14, 79

               
               
               Conread position:79-223
               
               
               Cow position:chr12:30226965-30226818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:80-189
               
               
               Cow position:chr12:44559817-44559930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:95
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:80-312
               
               
               Cow position:chr12:39452522-39452278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):30, 74

               
               
               Conread position:81-201
               
               
               Cow position:chr12:1344715-1344838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:81-310
               
               
               Cow position:chr12:23913041-23912813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):9, 112

               
               
               Conread position:82-189
               
               
               Cow position:chr12:6666545-6666650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:90
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):5, 27

               
               
               Conread position:82-189
               
               
               Cow position:chr12:18938839-18938948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:82-196
               
               
               Cow position:chr12:31602849-31602735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 11

               
               
               Conread position:82-198
               
               
               Cow position:chr12:18996781-18996899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:82-265
               
               
               Cow position:chr12:3662875-3662691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):5, 141

               
               
               Conread position:86-208
               
               
               Cow position:chr12:45782202-45782325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-213
               
               
               Cow position:chr12:20355191-20355318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):23, 95

               
               
               Conread position:86-214
               
               
               Cow position:chr12:27430482-27430616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:86-296
               
               
               Cow position:chr12:27572264-27572056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):24, 118

               
               
               Conread position:88-304
               
               
               Cow position:chr12:33319690-33319478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):22, 93

               
               
               Conread position:89-310
               
               
               Cow position:chr12:38182474-38182695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):20, 72

               
               
               Conread position:89-311
               
               
               Cow position:chr12:15832176-15832375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:90-207
               
               
               Cow position:chr12:12699663-12699543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:92-190
               
               
               Cow position:chr12:22469494-22469593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:100-213
               
               
               Cow position:chr12:44846638-44846754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:100-302
               
               
               Cow position:chr12:15790048-15790259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):20, 189

               
               
               Conread position:108-293
               
               
               Cow position:chr12:3569227-3569410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:109-312
               
               
               Cow position:chr12:4962634-4962823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:111-304
               
               
               Cow position:chr12:35218061-35217871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):114, 84

               
               
               Conread position:112-304
               
               
               Cow position:chr12:2241828-2241651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:114-304
               
               
               Cow position:chr12:25304894-25304712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):55, 77

               
               
               Conread position:117-304
               
               
               Cow position:chr12:1848489-1848311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:119-310
               
               
               Cow position:chr12:4790064-4789880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:128-307
               
               
               Cow position:chr12:34459679-34459877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):97, 152

               
               
               Conread position:129-308
               
               
               Cow position:chr12:1106248-1106079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):173, 66

               
               
               Conread position:135-310
               
               
               Cow position:chr12:39674668-39674496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):104, 135

               
               
               Conread position:152-308
               
               
               Cow position:chr12:5135689-5135846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:193-310
               
               
               Cow position:chr12:39452064-39451949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:92
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:1-140
               
               
               Cow position:chr13:61166389-61166534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:1-172
               
               
               Cow position:chr13:17622345-17622173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):51, 25

               
               
               Conread position:1-176
               
               
               Cow position:chr13:152024-151843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:1-176
               
               
               Cow position:chr13:31344161-31344339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 46

               
               
               Conread position:1-179
               
               
               Cow position:chr13:45073856-45074037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):45, 98

               
               
               Conread position:1-183
               
               
               Cow position:chr13:49457743-49457557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 51

               
               
               Conread position:1-185
               
               
               Cow position:chr13:11202095-11201912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):22, 75

               
               
               Conread position:1-186
               
               
               Cow position:chr13:25496067-25495875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):63, 37

               
               
               Conread position:1-189
               
               
               Cow position:chr13:24753950-24753754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):18, 55

               
               
               Conread position:1-192
               
               
               Cow position:chr13:31813941-31813740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:1-195
               
               
               Cow position:chr13:21242022-21242223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 65

               
               
               Conread position:1-195
               
               
               Cow position:chr13:25926854-25926651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):42, 17

               
               
               Conread position:1-196
               
               
               Cow position:chr13:52055524-52055732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-198
               
               
               Cow position:chr13:8362686-8362885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):50, 107

               
               
               Conread position:1-198
               
               
               Cow position:chr13:37803949-37803749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):17, 40

               
               
               Conread position:1-201
               
               
               Cow position:chr13:17021665-17021870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):22, 47

               
               
               Conread position:1-201
               
               
               Cow position:chr13:20534951-20534752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):37, 18

               
               
               Conread position:1-201
               
               
               Cow position:chr13:51821820-51822017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):58, 30

               
               
               Conread position:1-204
               
               
               Cow position:chr13:5263222-5263429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):13, 37

               
               
               Conread position:1-204
               
               
               Cow position:chr13:20579976-20579764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):19, 78

               
               
               Conread position:1-204
               
               
               Cow position:chr13:40491283-40491066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr13:620191-620395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):47, 107

               
               
               Conread position:1-207
               
               
               Cow position:chr13:15162588-15162783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 44

               
               
               Conread position:1-207
               
               
               Cow position:chr13:18929591-18929378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):24, 128

               
               
               Conread position:1-208
               
               
               Cow position:chr13:14576276-14576061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):11, 39

               
               
               Conread position:1-213
               
               
               Cow position:chr13:16014879-16014654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):11, 46

               
               
               Conread position:1-214
               
               
               Cow position:chr13:13297739-13297521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):21, 156

               
               
               Conread position:1-268
               
               
               Cow position:chr13:43829307-43829028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:1-287
               
               
               Cow position:chr13:11644003-11643715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:222
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):45, 198

               
               
               Conread position:1-304
               
               
               Cow position:chr13:185601-185292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):18, 206

               
               
               Conread position:1-306
               
               
               Cow position:chr13:13465714-13466009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):24, 46

               
               
               Conread position:1-312
               
               
               Cow position:chr13:9265769-9266069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):50, 18

               
               
               Conread position:2-201
               
               
               Cow position:chr13:19393359-19393147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:2-201
               
               
               Cow position:chr13:52057621-52057412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 36

               
               
               Conread position:3-172
               
               
               Cow position:chr13:49022800-49022984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:3-176
               
               
               Cow position:chr13:43139153-43139334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:3-207
               
               
               Cow position:chr13:37521676-37521893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):16, 172

               
               
               Conread position:3-312
               
               
               Cow position:chr13:20706144-20706446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):19, 204

               
               
               Conread position:4-207
               
               
               Cow position:chr13:1147090-1147298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):18, 74

               
               
               Conread position:4-207
               
               
               Cow position:chr13:60509057-60509271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:4-209
               
               
               Cow position:chr13:34728783-34728988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 115

               
               
               Conread position:4-217
               
               
               Cow position:chr13:7076317-7076093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:5-148
               
               
               Cow position:chr13:17613401-17613248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:5-149
               
               
               Cow position:chr13:42114076-42113926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:5-162
               
               
               Cow position:chr13:19183924-19183762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):57, 32

               
               
               Conread position:5-171
               
               
               Cow position:chr13:29123363-29123189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:5-172
               
               
               Cow position:chr13:47964137-47964297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:5-173
               
               
               Cow position:chr13:19240493-19240314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:5-176
               
               
               Cow position:chr13:46736270-46736095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:5-178
               
               
               Cow position:chr13:8524558-8524745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-179
               
               
               Cow position:chr13:6153725-6153906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):53, 170

               
               
               Conread position:5-182
               
               
               Cow position:chr13:5758283-5758469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):52, 33

               
               
               Conread position:5-182
               
               
               Cow position:chr13:52284866-52284690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):54, 99

               
               
               Conread position:5-184
               
               
               Cow position:chr13:12614313-12614125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr13:25428170-25428351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):38, 53

               
               
               Conread position:5-184
               
               
               Cow position:chr13:25435062-25435251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 143

               
               
               Conread position:5-186
               
               
               Cow position:chr13:5713358-5713185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):61, 33

               
               
               Conread position:5-187
               
               
               Cow position:chr13:13501564-13501748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):81, 50

               
               
               Conread position:5-187
               
               
               Cow position:chr13:18999598-18999404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-188
               
               
               Cow position:chr13:2822925-2822738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:5-188
               
               
               Cow position:chr13:26120305-26120491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):57, 18

               
               
               Conread position:5-188
               
               
               Cow position:chr13:42200677-42200487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:5-188
               
               
               Cow position:chr13:52228045-52228232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:5-188
               
               
               Cow position:chr13:54582934-54582742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 130

               
               
               Conread position:5-189
               
               
               Cow position:chr13:827300-827113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):41, 179

               
               
               Conread position:5-189
               
               
               Cow position:chr13:46112024-46111838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):48, 122

               
               
               Conread position:5-189
               
               
               Cow position:chr13:62008170-62007974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:5-191
               
               
               Cow position:chr13:56678073-56677880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 126

               
               
               Conread position:5-194
               
               
               Cow position:chr13:42229379-42229175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 185

               
               
               Conread position:5-195
               
               
               Cow position:chr13:19778791-19778992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:5-196
               
               
               Cow position:chr13:15288865-15289061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:5-196
               
               
               Cow position:chr13:15991173-15991371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):59, 38

               
               
               Conread position:5-196
               
               
               Cow position:chr13:18995184-18994986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):50, 113

               
               
               Conread position:5-196
               
               
               Cow position:chr13:20563053-20562853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:5-196
               
               
               Cow position:chr13:24369640-24369442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 62

               
               
               Conread position:5-196
               
               
               Cow position:chr13:25579130-25579330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:5-196
               
               
               Cow position:chr13:43184814-43185020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):42, 181

               
               
               Conread position:5-198
               
               
               Cow position:chr13:18166791-18166590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr13:34261288-34261089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):69, 38

               
               
               Conread position:5-198
               
               
               Cow position:chr13:42672364-42672565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:5-198
               
               
               Cow position:chr13:44202058-44201863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 76

               
               
               Conread position:5-198
               
               
               Cow position:chr13:52749420-52749614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):103, 33

               
               
               Conread position:5-198
               
               
               Cow position:chr13:54286674-54286865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):32, 54

               
               
               Conread position:5-199
               
               
               Cow position:chr13:15192832-15193029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-200
               
               
               Cow position:chr13:17110278-17110083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 111

               
               
               Conread position:5-200
               
               
               Cow position:chr13:20473624-20473825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 188

               
               
               Conread position:5-201
               
               
               Cow position:chr13:6616694-6616904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:5-201
               
               
               Cow position:chr13:6974218-6974017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):45, 164

               
               
               Conread position:5-201
               
               
               Cow position:chr13:11434522-11434718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 24

               
               
               Conread position:5-201
               
               
               Cow position:chr13:12546853-12547053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):54, 32

               
               
               Conread position:5-201
               
               
               Cow position:chr13:13320852-13320652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr13:18197549-18197753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):46, 33

               
               
               Conread position:5-201
               
               
               Cow position:chr13:20666327-20666531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr13:20839621-20839421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:5-201
               
               
               Cow position:chr13:21275915-21275714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr13:25695709-25695912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):23, 39

               
               
               Conread position:5-201
               
               
               Cow position:chr13:48597967-48597764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr13:54388961-54389166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:5-202
               
               
               Cow position:chr13:17822893-17823096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):54, 97

               
               
               Conread position:5-202
               
               
               Cow position:chr13:19188358-19188157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:5-204
               
               
               Cow position:chr13:10989018-10989224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):48, 106

               
               
               Conread position:5-204
               
               
               Cow position:chr13:17498274-17498068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 39

               
               
               Conread position:5-204
               
               
               Cow position:chr13:20784652-20784444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):44, 186

               
               
               Conread position:5-204
               
               
               Cow position:chr13:21170587-21170378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:5-206
               
               
               Cow position:chr13:17838007-17837801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:164
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):48, 181

               
               
               Conread position:5-206
               
               
               Cow position:chr13:61188588-61188382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):32, 55

               
               
               Conread position:5-207
               
               
               Cow position:chr13:5279129-5279353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr13:10221009-10220810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):83, 37

               
               
               Conread position:5-207
               
               
               Cow position:chr13:12875913-12876123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):43, 145

               
               
               Conread position:5-207
               
               
               Cow position:chr13:15281882-15282083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):50, 116

               
               
               Conread position:5-207
               
               
               Cow position:chr13:17158817-17159029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr13:19223703-19223504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 89

               
               
               Conread position:5-207
               
               
               Cow position:chr13:19279154-19278945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:5-207
               
               
               Cow position:chr13:24230267-24230062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):74, 41

               
               
               Conread position:5-207
               
               
               Cow position:chr13:25547528-25547733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:5-208
               
               
               Cow position:chr13:1568981-1568780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):41, 81

               
               
               Conread position:5-209
               
               
               Cow position:chr13:25817586-25817374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 33

               
               
               Conread position:5-209
               
               
               Cow position:chr13:55162269-55162059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:5-213
               
               
               Cow position:chr13:9900206-9900002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):82, 64

               
               
               Conread position:5-213
               
               
               Cow position:chr13:53330329-53330115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):80, 38

               
               
               Conread position:5-214
               
               
               Cow position:chr13:12207101-12206888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):82, 33

               
               
               Conread position:5-214
               
               
               Cow position:chr13:23960755-23960960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):100, 39

               
               
               Conread position:5-217
               
               
               Cow position:chr13:60974140-60973919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 110

               
               
               Conread position:5-219
               
               
               Cow position:chr13:10845653-10845440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):41, 90

               
               
               Conread position:5-219
               
               
               Cow position:chr13:17970970-17971192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):35, 18

               
               
               Conread position:5-220
               
               
               Cow position:chr13:15869180-15868950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:5-220
               
               
               Cow position:chr13:61990279-61990484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):41, 97

               
               
               Conread position:5-222
               
               
               Cow position:chr13:18172396-18172172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:5-223
               
               
               Cow position:chr13:40722650-40722875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):18, 60

               
               
               Conread position:5-226
               
               
               Cow position:chr13:12925831-12925612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):86, 96

               
               
               Conread position:5-236
               
               
               Cow position:chr13:60430017-60430257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):41, 116

               
               
               Conread position:5-266
               
               
               Cow position:chr13:56148581-56148306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):58, 50

               
               
               Conread position:5-266
               
               
               Cow position:chr13:56160386-56160661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):58, 50

               
               
               Conread position:5-295
               
               
               Cow position:chr13:2414086-2413799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):43, 135

               
               
               Conread position:5-299
               
               
               Cow position:chr13:5006050-5005774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):22, 46

               
               
               Conread position:5-303
               
               
               Cow position:chr13:45023154-45023435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 22

               
               
               Conread position:5-304
               
               
               Cow position:chr13:36771362-36771689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):41, 136

               
               
               Conread position:5-307
               
               
               Cow position:chr13:17563794-17563503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:224
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):82, 163

               
               
               Conread position:5-308
               
               
               Cow position:chr13:55316131-55316440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):50, 201

               
               
               Conread position:5-310
               
               
               Cow position:chr13:55727958-55727646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):38, 46

               
               
               Conread position:5-311
               
               
               Cow position:chr13:3315620-3315906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):31, 53

               
               
               Conread position:5-311
               
               
               Cow position:chr13:45604357-45604658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):57, 193

               
               
               Conread position:5-322
               
               
               Cow position:chr13:51940794-51940465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):47, 207

               
               
               Conread position:6-175
               
               
               Cow position:chr13:6060951-6061127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):46, 13

               
               
               Conread position:6-189
               
               
               Cow position:chr13:9643830-9644013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):42, 164

               
               
               Conread position:6-190
               
               
               Cow position:chr13:37981688-37981879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):52, 37

               
               
               Conread position:6-204
               
               
               Cow position:chr13:18491661-18491448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:6-212
               
               
               Cow position:chr13:38872895-38873100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):15, 9

               
               
               Conread position:6-213
               
               
               Cow position:chr13:23856269-23856054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):45, 32

               
               
               Conread position:6-223
               
               
               Cow position:chr13:37640640-37640425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):74, 44

               
               
               Conread position:6-231
               
               
               Cow position:chr13:45725952-45725711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):53, 114

               
               
               Conread position:6-308
               
               
               Cow position:chr13:8355262-8354961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):56, 117

               
               
               Conread position:7-179
               
               
               Cow position:chr13:9593564-9593383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 165

               
               
               Conread position:7-188
               
               
               Cow position:chr13:9385971-9386153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):83, 31

               
               
               Conread position:7-204
               
               
               Cow position:chr13:11260326-11260127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):37, 79

               
               
               Conread position:7-291
               
               
               Cow position:chr13:33352293-33352565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):43, 109

               
               
               Conread position:7-304
               
               
               Cow position:chr13:20679395-20679101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):55, 39

               
               
               Conread position:7-315
               
               
               Cow position:chr13:8609493-8609794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):39, 185

               
               
               Conread position:7-316
               
               
               Cow position:chr13:1042910-1043220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:229
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):48, 160

               
               
               Conread position:8-196
               
               
               Cow position:chr13:19882980-19883174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):35, 138

               
               
               Conread position:12-189
               
               
               Cow position:chr13:43762223-43762036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):10, 173

               
               
               Conread position:12-198
               
               
               Cow position:chr13:5671537-5671728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):10, 53

               
               
               Conread position:12-207
               
               
               Cow position:chr13:37592893-37593098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:165
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:12-207
               
               
               Cow position:chr13:52894198-52893998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):16, 175

               
               
               Conread position:13-188
               
               
               Cow position:chr13:21171520-21171704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):9, 53

               
               
               Conread position:13-218
               
               
               Cow position:chr13:23270158-23270369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):15, 96

               
               
               Conread position:13-301
               
               
               Cow position:chr13:51115968-51116266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 178

               
               
               Conread position:14-212
               
               
               Cow position:chr13:21295121-21294919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):19, 51

               
               
               Conread position:15-186
               
               
               Cow position:chr13:39826600-39826427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 44

               
               
               Conread position:15-207
               
               
               Cow position:chr13:33256549-33256350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):31, 114

               
               
               Conread position:15-207
               
               
               Cow position:chr13:52459432-52459631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):7, 80

               
               
               Conread position:15-207
               
               
               Cow position:chr13:54128546-54128746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):39, 158

               
               
               Conread position:15-214
               
               
               Cow position:chr13:2774175-2773967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):76, 28

               
               
               Conread position:15-279
               
               
               Cow position:chr13:23167047-23167309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):7, 175

               
               
               Conread position:15-292
               
               
               Cow position:chr13:14771503-14771218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):27, 264

               
               
               Conread position:17-172
               
               
               Cow position:chr13:60393829-60393668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:17-201
               
               
               Cow position:chr13:12673247-12673433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 143

               
               
               Conread position:19-183
               
               
               Cow position:chr13:8233039-8232875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):29, 39

               
               
               Conread position:19-186
               
               
               Cow position:chr13:11061027-11060857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):67, 11

               
               
               Conread position:19-204
               
               
               Cow position:chr13:15195167-15195351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):39, 7

               
               
               Conread position:19-208
               
               
               Cow position:chr13:43893278-43893476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:19-208
               
               
               Cow position:chr13:43919218-43919414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:19-308
               
               
               Cow position:chr13:37381845-37381559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 24

               
               
               Conread position:20-157
               
               
               Cow position:chr13:18243904-18243761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:20-161
               
               
               Cow position:chr13:60389450-60389593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):59, 22

               
               
               Conread position:20-164
               
               
               Cow position:chr13:8201440-8201591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):23, 49

               
               
               Conread position:20-179
               
               
               Cow position:chr13:8652396-8652566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:20-183
               
               
               Cow position:chr13:37946907-37947078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 109

               
               
               Conread position:20-184
               
               
               Cow position:chr13:25537669-25537495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:20-187
               
               
               Cow position:chr13:46516103-46515930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:20-188
               
               
               Cow position:chr13:17350396-17350223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):34, 98

               
               
               Conread position:20-188
               
               
               Cow position:chr13:51901635-51901452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:20-192
               
               
               Cow position:chr13:23512409-23512236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):35, 18

               
               
               Conread position:20-194
               
               
               Cow position:chr13:6342045-6342226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-194
               
               
               Cow position:chr13:20231152-20231328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:20-195
               
               
               Cow position:chr13:584829-585009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 7

               
               
               Conread position:20-195
               
               
               Cow position:chr13:9975033-9975215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-195
               
               
               Cow position:chr13:16020895-16020712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:20-195
               
               
               Cow position:chr13:24715286-24715102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:20-195
               
               
               Cow position:chr13:51856843-51857023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):35, 23

               
               
               Conread position:20-196
               
               
               Cow position:chr13:43595066-43595243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):28, 122

               
               
               Conread position:20-196
               
               
               Cow position:chr13:56034816-56034999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):29, 18

               
               
               Conread position:20-198
               
               
               Cow position:chr13:15349212-15349387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):119, 26

               
               
               Conread position:20-198
               
               
               Cow position:chr13:26480170-26480346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):26, 43

               
               
               Conread position:20-198
               
               
               Cow position:chr13:59170694-59170515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:20-201
               
               
               Cow position:chr13:15985053-15984863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):31, 23

               
               
               Conread position:20-201
               
               
               Cow position:chr13:20288697-20288503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-201
               
               
               Cow position:chr13:37503538-37503728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):23, 81

               
               
               Conread position:20-201
               
               
               Cow position:chr13:60966810-60966624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:20-202
               
               
               Cow position:chr13:7191022-7190819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):24, 155

               
               
               Conread position:20-204
               
               
               Cow position:chr13:7663379-7663572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 162

               
               
               Conread position:20-207
               
               
               Cow position:chr13:10924870-10925070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):29, 149

               
               
               Conread position:20-207
               
               
               Cow position:chr13:20137867-20137670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr13:20360319-20360128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr13:27181073-27180890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 23

               
               
               Conread position:20-207
               
               
               Cow position:chr13:34873633-34873438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):32, 6

               
               
               Conread position:20-209
               
               
               Cow position:chr13:52640907-52641099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):31, 18

               
               
               Conread position:20-217
               
               
               Cow position:chr13:26369568-26369363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):39, 113

               
               
               Conread position:20-285
               
               
               Cow position:chr13:39368003-39367723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):73, 220

               
               
               Conread position:20-299
               
               
               Cow position:chr13:1733089-1733387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 87

               
               
               Conread position:20-301
               
               
               Cow position:chr13:3211594-3211300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):32, 232

               
               
               Conread position:20-311
               
               
               Cow position:chr13:37621320-37621595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:20-312
               
               
               Cow position:chr13:4420387-4420085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):35, 23

               
               
               Conread position:20-319
               
               
               Cow position:chr13:21283659-21283969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 229

               
               
               Conread position:20-324
               
               
               Cow position:chr13:51227700-51228003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:21-197
               
               
               Cow position:chr13:4664824-4664995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):65, 22

               
               
               Conread position:21-198
               
               
               Cow position:chr13:20879782-20879967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:21-209
               
               
               Cow position:chr13:43869071-43869267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):25, 160

               
               
               Conread position:21-289
               
               
               Cow position:chr13:38278107-38278396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 22

               
               
               Conread position:22-301
               
               
               Cow position:chr13:52585993-52586272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):25, 168

               
               
               Conread position:23-223
               
               
               Cow position:chr13:17439730-17439935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):30, 93

               
               
               Conread position:26-310
               
               
               Cow position:chr13:9117533-9117821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):33, 131

               
               
               Conread position:26-321
               
               
               Cow position:chr13:11096211-11095898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):60, 23

               
               
               Conread position:27-230
               
               
               Cow position:chr13:10928956-10929163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 11

               
               
               Conread position:28-198
               
               
               Cow position:chr13:28439444-28439267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:29-207
               
               
               Cow position:chr13:8667653-8667468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:30-205
               
               
               Cow position:chr13:55081174-55080994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):13, 140

               
               
               Conread position:31-176
               
               
               Cow position:chr13:3125826-3125681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 12

               
               
               Conread position:31-207
               
               
               Cow position:chr13:32283160-32282977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:35-192
               
               
               Cow position:chr13:15069983-15069822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:35-207
               
               
               Cow position:chr13:47243530-47243701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):7, 28

               
               
               Conread position:35-237
               
               
               Cow position:chr13:84604-84389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:36-201
               
               
               Cow position:chr13:18340557-18340388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:36-208
               
               
               Cow position:chr13:17977376-17977202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):15, 76

               
               
               Conread position:37-301
               
               
               Cow position:chr13:25450459-25450725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):11, 140

               
               
               Conread position:39-201
               
               
               Cow position:chr13:6663733-6663897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):51, 18

               
               
               Conread position:39-201
               
               
               Cow position:chr13:37069365-37069200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):54, 23

               
               
               Conread position:39-201
               
               
               Cow position:chr13:45353053-45352886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:39-201
               
               
               Cow position:chr13:48222526-48222693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:40-176
               
               
               Cow position:chr13:50582801-50582944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):48, 24

               
               
               Conread position:40-209
               
               
               Cow position:chr13:2404774-2404609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):18, 75

               
               
               Conread position:40-215
               
               
               Cow position:chr13:6926535-6926359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):53, 10

               
               
               Conread position:41-207
               
               
               Cow position:chr13:8699719-8699890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):52, 16

               
               
               Conread position:41-217
               
               
               Cow position:chr13:42640401-42640224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):65, 45

               
               
               Conread position:41-300
               
               
               Cow position:chr13:19750734-19750488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):38, 93

               
               
               Conread position:43-205
               
               
               Cow position:chr13:37985726-37985895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:43-218
               
               
               Cow position:chr13:47675917-47676096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 142

               
               
               Conread position:45-164
               
               
               Cow position:chr13:15739704-15739585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):65, 48

               
               
               Conread position:45-196
               
               
               Cow position:chr13:50646616-50646771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 45

               
               
               Conread position:45-222
               
               
               Cow position:chr13:26889236-26889056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):48, 14

               
               
               Conread position:46-196
               
               
               Cow position:chr13:7046883-7046730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:46-198
               
               
               Cow position:chr13:15997047-15996892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):47, 11

               
               
               Conread position:46-198
               
               
               Cow position:chr13:24110495-24110338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:46-204
               
               
               Cow position:chr13:59461251-59461096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):64, 11

               
               
               Conread position:46-207
               
               
               Cow position:chr13:48554380-48554215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):8, 98

               
               
               Conread position:46-208
               
               
               Cow position:chr13:1462284-1462444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:47-196
               
               
               Cow position:chr13:23479042-23478890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):46, 15

               
               
               Conread position:47-198
               
               
               Cow position:chr13:47193397-47193250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 48

               
               
               Conread position:48-207
               
               
               Cow position:chr13:14796217-14796058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):14, 9

               
               
               Conread position:49-194
               
               
               Cow position:chr13:10522944-10522799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 13

               
               
               Conread position:50-185
               
               
               Cow position:chr13:6442100-6442234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):61, 43

               
               
               Conread position:50-189
               
               
               Cow position:chr13:20520071-20519928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:50-201
               
               
               Cow position:chr13:4404540-4404386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):38, 10

               
               
               Conread position:50-204
               
               
               Cow position:chr13:45593927-45593773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):29, 62

               
               
               Conread position:50-207
               
               
               Cow position:chr13:32017502-32017663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:51-217
               
               
               Cow position:chr13:37751058-37751226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):42, 152

               
               
               Conread position:52-200
               
               
               Cow position:chr13:52536573-52536420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 146

               
               
               Conread position:57-176
               
               
               Cow position:chr13:18517048-18516926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):33, 81

               
               
               Conread position:57-182
               
               
               Cow position:chr13:15143840-15143968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-196
               
               
               Cow position:chr13:36666271-36666414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:57-197
               
               
               Cow position:chr13:6486248-6486389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):31, 53

               
               
               Conread position:57-200
               
               
               Cow position:chr13:54652326-54652468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):132, 29

               
               
               Conread position:57-204
               
               
               Cow position:chr13:55765175-55765326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):36, 115

               
               
               Conread position:57-206
               
               
               Cow position:chr13:28536319-28536467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):53, 37

               
               
               Conread position:57-208
               
               
               Cow position:chr13:21980973-21981124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 50

               
               
               Conread position:57-209
               
               
               Cow position:chr13:13775240-13775394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):34, 127

               
               
               Conread position:57-209
               
               
               Cow position:chr13:16908220-16908066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):36, 138

               
               
               Conread position:57-209
               
               
               Cow position:chr13:44003702-44003549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):30, 125

               
               
               Conread position:57-311
               
               
               Cow position:chr13:13182197-13181948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):34, 55

               
               
               Conread position:57-315
               
               
               Cow position:chr13:51813933-51814196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 44

               
               
               Conread position:59-207
               
               
               Cow position:chr13:37775206-37775357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):34, 119

               
               
               Conread position:61-188
               
               
               Cow position:chr13:43794553-43794429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):49, 99

               
               
               Conread position:61-189
               
               
               Cow position:chr13:6183421-6183553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:61-197
               
               
               Cow position:chr13:17813470-17813330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:61-207
               
               
               Cow position:chr13:50768595-50768448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):32, 39

               
               
               Conread position:62-207
               
               
               Cow position:chr13:12923872-12923726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:62-207
               
               
               Cow position:chr13:40541107-40541256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:62-209
               
               
               Cow position:chr13:18615382-18615231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):26, 135

               
               
               Conread position:65-198
               
               
               Cow position:chr13:15460781-15460916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 119

               
               
               Conread position:67-196
               
               
               Cow position:chr13:49356056-49356191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:69-197
               
               
               Cow position:chr13:43787846-43787979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:69-197
               
               
               Cow position:chr13:43839685-43839818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:69-309
               
               
               Cow position:chr13:9884526-9884268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:70-221
               
               
               Cow position:chr13:27419094-27419239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:71-188
               
               
               Cow position:chr13:24094328-24094445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):15, 45

               
               
               Conread position:74-311
               
               
               Cow position:chr13:39398637-39398410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 121

               
               
               Conread position:75-207
               
               
               Cow position:chr13:53865621-53865485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:76-312
               
               
               Cow position:chr13:42017826-42018061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):25, 106

               
               
               Conread position:79-185
               
               
               Cow position:chr13:24099025-24098917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-207
               
               
               Cow position:chr13:11147036-11146906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-212
               
               
               Cow position:chr13:47227380-47227517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:79-226
               
               
               Cow position:chr13:37517198-37517343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):8, 88

               
               
               Conread position:79-284
               
               
               Cow position:chr13:1075060-1075271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:80-189
               
               
               Cow position:chr13:8392919-8393030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:80-223
               
               
               Cow position:chr13:6608404-6608547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):7, 125

               
               
               Conread position:82-201
               
               
               Cow position:chr13:6975867-6975990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:82-204
               
               
               Cow position:chr13:30148587-30148711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:82-301
               
               
               Cow position:chr13:29631584-29631378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):5, 111

               
               
               Conread position:82-311
               
               
               Cow position:chr13:20531498-20531715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):5, 107

               
               
               Conread position:83-229
               
               
               Cow position:chr13:21193068-21192921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):27, 72

               
               
               Conread position:83-304
               
               
               Cow position:chr13:53309157-53309367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):159, 10

               
               
               Conread position:85-204
               
               
               Cow position:chr13:9124896-9124778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 50

               
               
               Conread position:85-216
               
               
               Cow position:chr13:25520943-25521072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):25, 112

               
               
               Conread position:86-198
               
               
               Cow position:chr13:16163553-16163440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-201
               
               
               Cow position:chr13:13796840-13796956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-207
               
               
               Cow position:chr13:3153721-3153600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 95

               
               
               Conread position:86-207
               
               
               Cow position:chr13:6113555-6113679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-209
               
               
               Cow position:chr13:8637669-8637547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 105

               
               
               Conread position:87-207
               
               
               Cow position:chr13:23685029-23685150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:88-311
               
               
               Cow position:chr13:32387035-32387261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:92-207
               
               
               Cow position:chr13:13781145-13781030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 61

               
               
               Conread position:92-207
               
               
               Cow position:chr13:48127073-48126957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:93-211
               
               
               Cow position:chr13:15808730-15808613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):17, 38

               
               
               Conread position:100-308
               
               
               Cow position:chr13:29907997-29908198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):6, 20

               
               
               Conread position:104-312
               
               
               Cow position:chr13:26365857-26365646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:109-335
               
               
               Cow position:chr13:17229664-17229458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):209, 71

               
               
               Conread position:110-198
               
               
               Cow position:chr13:13981217-13981305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:89
               
               
               Alignm identity:76
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:115-316
               
               
               Cow position:chr13:4980988-4980789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:122-308
               
               
               Cow position:chr13:37021062-37021245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:128-303
               
               
               Cow position:chr13:3948431-3948262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:138-309
               
               
               Cow position:chr13:8521775-8521944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):101, 31

               
               
               Conread position:149-304
               
               
               Cow position:chr13:50713007-50712844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:168-309
               
               
               Cow position:chr13:11071300-11071446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:1-173
               
               
               Cow position:chr14:49767584-49767403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):50, 16

               
               
               Conread position:1-175
               
               
               Cow position:chr14:25403811-25403997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-178
               
               
               Cow position:chr14:10697388-10697566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):45, 12

               
               
               Conread position:1-182
               
               
               Cow position:chr14:35018628-35018822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-184
               
               
               Cow position:chr14:37447349-37447534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):25, 106

               
               
               Conread position:1-186
               
               
               Cow position:chr14:40474680-40474492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 57

               
               
               Conread position:1-195
               
               
               Cow position:chr14:41267630-41267814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):21, 80

               
               
               Conread position:1-196
               
               
               Cow position:chr14:7036228-7036440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-197
               
               
               Cow position:chr14:8541094-8541295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):21, 175

               
               
               Conread position:1-198
               
               
               Cow position:chr14:19618630-19618835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):21, 173

               
               
               Conread position:1-200
               
               
               Cow position:chr14:23424384-23424174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):18, 123

               
               
               Conread position:1-200
               
               
               Cow position:chr14:23443145-23442935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):18, 123

               
               
               Conread position:1-200
               
               
               Cow position:chr14:36289680-36289885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):53, 109

               
               
               Conread position:1-201
               
               
               Cow position:chr14:1646071-1646274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 53

               
               
               Conread position:1-201
               
               
               Cow position:chr14:20110596-20110810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:1-205
               
               
               Cow position:chr14:14466350-14466547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):21, 46

               
               
               Conread position:1-206
               
               
               Cow position:chr14:26628403-26628616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr14:7695388-7695172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-212
               
               
               Cow position:chr14:25779218-25779002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):21, 86

               
               
               Conread position:1-228
               
               
               Cow position:chr14:5836028-5835793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):46, 105

               
               
               Conread position:1-304
               
               
               Cow position:chr14:34331200-34331503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):15, 204

               
               
               Conread position:1-311
               
               
               Cow position:chr14:37883793-37884096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 200

               
               
               Conread position:2-200
               
               
               Cow position:chr14:19189168-19188956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:3-187
               
               
               Cow position:chr14:14187449-14187257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:3-193
               
               
               Cow position:chr14:7959900-7959707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):16, 94

               
               
               Conread position:3-197
               
               
               Cow position:chr14:10858556-10858350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):16, 184

               
               
               Conread position:3-198
               
               
               Cow position:chr14:1859491-1859697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):16, 41

               
               
               Conread position:3-204
               
               
               Cow position:chr14:23103878-23104090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):18, 130

               
               
               Conread position:3-207
               
               
               Cow position:chr14:21357678-21357466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):18, 118

               
               
               Conread position:3-300
               
               
               Cow position:chr14:22583267-22582971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 113

               
               
               Conread position:5-148
               
               
               Cow position:chr14:3564396-3564249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):50, 38

               
               
               Conread position:5-163
               
               
               Cow position:chr14:22966867-22966706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):83, 150

               
               
               Conread position:5-178
               
               
               Cow position:chr14:18904495-18904671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):48, 107

               
               
               Conread position:5-179
               
               
               Cow position:chr14:50055506-50055333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):86, 38

               
               
               Conread position:5-183
               
               
               Cow position:chr14:16352460-16352279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:5-183
               
               
               Cow position:chr14:16834440-16834251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:5-183
               
               
               Cow position:chr14:33309392-33309573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 52

               
               
               Conread position:5-187
               
               
               Cow position:chr14:4202979-4203172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr14:4282393-4282582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr14:19863318-19863510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr14:20016590-20016783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):36, 63

               
               
               Conread position:5-189
               
               
               Cow position:chr14:37422673-37422858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):46, 127

               
               
               Conread position:5-192
               
               
               Cow position:chr14:2038700-2038887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):74, 31

               
               
               Conread position:5-196
               
               
               Cow position:chr14:4877117-4877310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):47, 113

               
               
               Conread position:5-196
               
               
               Cow position:chr14:12954268-12954465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):23, 8

               
               
               Conread position:5-197
               
               
               Cow position:chr14:45605206-45605014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):48, 38

               
               
               Conread position:5-198
               
               
               Cow position:chr14:1796305-1796108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):44, 163

               
               
               Conread position:5-198
               
               
               Cow position:chr14:4991120-4990917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr14:12511786-12511981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):45, 91

               
               
               Conread position:5-199
               
               
               Cow position:chr14:44084363-44084575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-200
               
               
               Cow position:chr14:8786437-8786631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):47, 108

               
               
               Conread position:5-200
               
               
               Cow position:chr14:24387563-24387354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:5-200
               
               
               Cow position:chr14:45718151-45718350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):48, 141

               
               
               Conread position:5-200
               
               
               Cow position:chr14:46654429-46654629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):54, 170

               
               
               Conread position:5-201
               
               
               Cow position:chr14:16033123-16032924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):41, 102

               
               
               Conread position:5-201
               
               
               Cow position:chr14:29965132-29964932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):41, 27

               
               
               Conread position:5-201
               
               
               Cow position:chr14:38921064-38920863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):63, 24

               
               
               Conread position:5-201
               
               
               Cow position:chr14:42419159-42419361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):49, 32

               
               
               Conread position:5-202
               
               
               Cow position:chr14:8945969-8946173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:5-204
               
               
               Cow position:chr14:16237388-16237607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:5-206
               
               
               Cow position:chr14:35503479-35503267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr14:19594015-19594230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):42, 189

               
               
               Conread position:5-207
               
               
               Cow position:chr14:20712575-20712781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):43, 128

               
               
               Conread position:5-207
               
               
               Cow position:chr14:24922216-24922007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):37, 190

               
               
               Conread position:5-207
               
               
               Cow position:chr14:45312907-45312704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:5-207
               
               
               Cow position:chr14:49021788-49021993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):85, 120

               
               
               Conread position:5-208
               
               
               Cow position:chr14:33830411-33830207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:162
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):88, 41

               
               
               Conread position:5-208
               
               
               Cow position:chr14:41128009-41127814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:5-209
               
               
               Cow position:chr14:6735744-6735958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 135

               
               
               Conread position:5-212
               
               
               Cow position:chr14:1708542-1708753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):41, 21

               
               
               Conread position:5-213
               
               
               Cow position:chr14:12634772-12634981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):88, 51

               
               
               Conread position:5-215
               
               
               Cow position:chr14:10693144-10693354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):52, 33

               
               
               Conread position:5-215
               
               
               Cow position:chr14:11056625-11056831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):83, 37

               
               
               Conread position:5-215
               
               
               Cow position:chr14:38143994-38144207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):50, 191

               
               
               Conread position:5-221
               
               
               Cow position:chr14:24981569-24981353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):47, 108

               
               
               Conread position:5-222
               
               
               Cow position:chr14:42437140-42436916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-227
               
               
               Cow position:chr14:3194969-3194751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 56

               
               
               Conread position:5-227
               
               
               Cow position:chr14:19129624-19129392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-229
               
               
               Cow position:chr14:15504039-15504275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:5-240
               
               
               Cow position:chr14:26097577-26097821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):16, 12

               
               
               Conread position:5-293
               
               
               Cow position:chr14:44258041-44257739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):41, 186

               
               
               Conread position:5-300
               
               
               Cow position:chr14:8750190-8749894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):35, 62

               
               
               Conread position:5-301
               
               
               Cow position:chr14:21964233-21963966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):44, 53

               
               
               Conread position:5-305
               
               
               Cow position:chr14:27275276-27274981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):17, 115

               
               
               Conread position:5-307
               
               
               Cow position:chr14:34983978-34983688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):89, 25

               
               
               Conread position:6-194
               
               
               Cow position:chr14:14316996-14316806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:7-189
               
               
               Cow position:chr14:11470036-11470223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):42, 163

               
               
               Conread position:7-198
               
               
               Cow position:chr14:5630274-5630078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 177

               
               
               Conread position:7-198
               
               
               Cow position:chr14:6541611-6541811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:7-200
               
               
               Cow position:chr14:40209013-40208811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 181

               
               
               Conread position:7-201
               
               
               Cow position:chr14:35420650-35420852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):42, 30

               
               
               Conread position:7-228
               
               
               Cow position:chr14:1868272-1868495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):55, 36

               
               
               Conread position:7-242
               
               
               Cow position:chr14:40165536-40165296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):46, 161

               
               
               Conread position:7-310
               
               
               Cow position:chr14:6226514-6226803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):45, 106

               
               
               Conread position:12-184
               
               
               Cow position:chr14:47511067-47510890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):10, 104

               
               
               Conread position:13-200
               
               
               Cow position:chr14:29723484-29723670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):34, 95

               
               
               Conread position:13-206
               
               
               Cow position:chr14:9901287-9901091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):9, 102

               
               
               Conread position:13-209
               
               
               Cow position:chr14:36555049-36555242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):46, 30

               
               
               Conread position:14-205
               
               
               Cow position:chr14:48496039-48496236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):14, 31

               
               
               Conread position:15-188
               
               
               Cow position:chr14:25903630-25903456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):71, 35

               
               
               Conread position:15-196
               
               
               Cow position:chr14:12244277-12244468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:15-304
               
               
               Cow position:chr14:10631018-10631312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):78, 47

               
               
               Conread position:15-318
               
               
               Cow position:chr14:7077099-7076792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):28, 51

               
               
               Conread position:17-184
               
               
               Cow position:chr14:17841186-17841362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):19, 146

               
               
               Conread position:19-198
               
               
               Cow position:chr14:40283724-40283533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:19-204
               
               
               Cow position:chr14:40754144-40754338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:19-304
               
               
               Cow position:chr14:34096470-34096741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):74, 43

               
               
               Conread position:20-168
               
               
               Cow position:chr14:41302733-41302885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:20-179
               
               
               Cow position:chr14:803787-803620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):35, 111

               
               
               Conread position:20-179
               
               
               Cow position:chr14:25399173-25399003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-179
               
               
               Cow position:chr14:48412780-48412948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-187
               
               
               Cow position:chr14:32452352-32452175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-188
               
               
               Cow position:chr14:46998136-46997964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):32, 23

               
               
               Conread position:20-188
               
               
               Cow position:chr14:50362895-50362719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-189
               
               
               Cow position:chr14:13426946-13426775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 92

               
               
               Conread position:20-189
               
               
               Cow position:chr14:15039511-15039689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:20-194
               
               
               Cow position:chr14:1868697-1868882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):73, 8

               
               
               Conread position:20-194
               
               
               Cow position:chr14:3943453-3943631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:20-194
               
               
               Cow position:chr14:12520205-12520383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):32, 17

               
               
               Conread position:20-194
               
               
               Cow position:chr14:33247332-33247510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):32, 23

               
               
               Conread position:20-197
               
               
               Cow position:chr14:12035507-12035327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):39, 164

               
               
               Conread position:20-198
               
               
               Cow position:chr14:47672787-47672967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):32, 66

               
               
               Conread position:20-201
               
               
               Cow position:chr14:36442917-36443106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-202
               
               
               Cow position:chr14:49488061-49487872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):35, 23

               
               
               Conread position:20-206
               
               
               Cow position:chr14:33456941-33457135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):27, 169

               
               
               Conread position:20-207
               
               
               Cow position:chr14:2974991-2975177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):26, 63

               
               
               Conread position:20-207
               
               
               Cow position:chr14:11285675-11285486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 6

               
               
               Conread position:20-207
               
               
               Cow position:chr14:22941622-22941822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr14:26655035-26655228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 6

               
               
               Conread position:20-209
               
               
               Cow position:chr14:8923483-8923679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):17, 42

               
               
               Conread position:20-231
               
               
               Cow position:chr14:25824789-25824578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):68, 17

               
               
               Conread position:20-241
               
               
               Cow position:chr14:1977971-1978205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):33, 227

               
               
               Conread position:20-293
               
               
               Cow position:chr14:9539094-9539363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):90, 43

               
               
               Conread position:20-300
               
               
               Cow position:chr14:18657504-18657800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):39, 64

               
               
               Conread position:20-307
               
               
               Cow position:chr14:18763344-18763624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 23

               
               
               Conread position:20-307
               
               
               Cow position:chr14:35381690-35381408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):27, 138

               
               
               Conread position:20-308
               
               
               Cow position:chr14:39926303-39926020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:209
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):27, 41

               
               
               Conread position:20-310
               
               
               Cow position:chr14:16341093-16340818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):35, 23

               
               
               Conread position:21-194
               
               
               Cow position:chr14:40230540-40230716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):21, 60

               
               
               Conread position:21-198
               
               
               Cow position:chr14:48744612-48744431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):38, 164

               
               
               Conread position:21-201
               
               
               Cow position:chr14:7198601-7198410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:21-207
               
               
               Cow position:chr14:28378459-28378265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:21-207
               
               
               Cow position:chr14:41190985-41191189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:21-233
               
               
               Cow position:chr14:44713515-44713299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:22-149
               
               
               Cow position:chr14:46062045-46061906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:22-304
               
               
               Cow position:chr14:27044675-27044947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):41, 15

               
               
               Conread position:26-196
               
               
               Cow position:chr14:34775654-34775829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):37, 11

               
               
               Conread position:26-312
               
               
               Cow position:chr14:37155970-37155680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):36, 153

               
               
               Conread position:35-188
               
               
               Cow position:chr14:34399716-34399873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:35-296
               
               
               Cow position:chr14:25073199-25072956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):10, 24

               
               
               Conread position:36-206
               
               
               Cow position:chr14:4848427-4848253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):62, 26

               
               
               Conread position:37-188
               
               
               Cow position:chr14:23419882-23419721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:37-189
               
               
               Cow position:chr14:41837794-41837948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 13

               
               
               Conread position:37-224
               
               
               Cow position:chr14:16457596-16457411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:37-304
               
               
               Cow position:chr14:10078348-10078097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):42, 147

               
               
               Conread position:38-175
               
               
               Cow position:chr14:24839860-24839719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:38-188
               
               
               Cow position:chr14:39618295-39618451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:39-207
               
               
               Cow position:chr14:10609757-10609586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):54, 18

               
               
               Conread position:39-301
               
               
               Cow position:chr14:36709197-36708946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):61, 16

               
               
               Conread position:40-201
               
               
               Cow position:chr14:27823508-27823344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):53, 37

               
               
               Conread position:40-310
               
               
               Cow position:chr14:45577015-45577279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):53, 142

               
               
               Conread position:41-200
               
               
               Cow position:chr14:18309232-18309394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:42-184
               
               
               Cow position:chr14:16310576-16310431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 11

               
               
               Conread position:45-198
               
               
               Cow position:chr14:42439841-42439996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:45-201
               
               
               Cow position:chr14:28924240-28924080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:45-207
               
               
               Cow position:chr14:4227149-4227316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:45-208
               
               
               Cow position:chr14:36425339-36425502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):65, 41

               
               
               Conread position:46-175
               
               
               Cow position:chr14:33644027-33643898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):64, 11

               
               
               Conread position:46-188
               
               
               Cow position:chr14:34448901-34449046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):47, 11

               
               
               Conread position:46-201
               
               
               Cow position:chr14:40952328-40952183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:46-207
               
               
               Cow position:chr14:13385438-13385275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):49, 16

               
               
               Conread position:47-187
               
               
               Cow position:chr14:23078718-23078866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:47-201
               
               
               Cow position:chr14:20467003-20466849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):11, 48

               
               
               Conread position:48-201
               
               
               Cow position:chr14:42423159-42423003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):28, 11

               
               
               Conread position:49-215
               
               
               Cow position:chr14:5958919-5959090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:50-196
               
               
               Cow position:chr14:27733669-27733524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:50-201
               
               
               Cow position:chr14:15428545-15428390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:50-213
               
               
               Cow position:chr14:27077044-27076879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):30, 134

               
               
               Conread position:50-288
               
               
               Cow position:chr14:11975670-11975895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):60, 12

               
               
               Conread position:51-214
               
               
               Cow position:chr14:18302026-18301859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):39, 11

               
               
               Conread position:52-209
               
               
               Cow position:chr14:30431503-30431662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):41, 144

               
               
               Conread position:56-303
               
               
               Cow position:chr14:31138680-31138927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):27, 128

               
               
               Conread position:57-189
               
               
               Cow position:chr14:39037281-39037150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):29, 55

               
               
               Conread position:57-201
               
               
               Cow position:chr14:22916231-22916378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 83

               
               
               Conread position:57-206
               
               
               Cow position:chr14:4109432-4109583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 55

               
               
               Conread position:57-208
               
               
               Cow position:chr14:16749625-16749780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 121

               
               
               Conread position:57-218
               
               
               Cow position:chr14:20481783-20481946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):29, 55

               
               
               Conread position:57-300
               
               
               Cow position:chr14:22997517-22997749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):29, 114

               
               
               Conread position:58-214
               
               
               Cow position:chr14:18350798-18350959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:58-319
               
               
               Cow position:chr14:50146938-50146679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):35, 77

               
               
               Conread position:62-195
               
               
               Cow position:chr14:18941231-18941367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):31, 76

               
               
               Conread position:62-205
               
               
               Cow position:chr14:20234138-20234285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:64-188
               
               
               Cow position:chr14:21406657-21406785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:64-207
               
               
               Cow position:chr14:27364631-27364486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:66-201
               
               
               Cow position:chr14:20245118-20245257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:68-201
               
               
               Cow position:chr14:18559012-18559148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 101

               
               
               Conread position:68-204
               
               
               Cow position:chr14:15211975-15211840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):18, 58

               
               
               Conread position:68-207
               
               
               Cow position:chr14:16287531-16287389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:68-308
               
               
               Cow position:chr14:15491205-15490963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):25, 145

               
               
               Conread position:72-201
               
               
               Cow position:chr14:30023156-30023285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):38, 17

               
               
               Conread position:72-310
               
               
               Cow position:chr14:4209551-4209293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:73-196
               
               
               Cow position:chr14:17060851-17060730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):37, 13

               
               
               Conread position:74-221
               
               
               Cow position:chr14:16761571-16761718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):37, 12

               
               
               Conread position:75-206
               
               
               Cow position:chr14:8083237-8083106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):35, 104

               
               
               Conread position:78-207
               
               
               Cow position:chr14:18412554-18412685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:79-189
               
               
               Cow position:chr14:50519143-50519255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:79-196
               
               
               Cow position:chr14:26456409-26456290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:82-198
               
               
               Cow position:chr14:39422849-39422969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:82-259
               
               
               Cow position:chr14:42276656-42276473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):5, 32

               
               
               Conread position:84-318
               
               
               Cow position:chr14:25675198-25675439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):114, 90

               
               
               Conread position:86-188
               
               
               Cow position:chr14:18270389-18270286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-208
               
               
               Cow position:chr14:37436682-37436804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):24, 113

               
               
               Conread position:86-222
               
               
               Cow position:chr14:24580668-24580534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):24, 80

               
               
               Conread position:87-196
               
               
               Cow position:chr14:7316821-7316711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:87-212
               
               
               Cow position:chr14:20071098-20070972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:87-214
               
               
               Cow position:chr14:27303685-27303557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:88-198
               
               
               Cow position:chr14:24785684-24785573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:88-209
               
               
               Cow position:chr14:14280258-14280136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:89-212
               
               
               Cow position:chr14:11509787-11509909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):21, 70

               
               
               Conread position:92-234
               
               
               Cow position:chr14:25611507-25611365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):24, 89

               
               
               Conread position:93-305
               
               
               Cow position:chr14:26880988-26881206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 85

               
               
               Conread position:93-310
               
               
               Cow position:chr14:29631952-29631740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:168
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:101-202
               
               
               Cow position:chr14:25912663-25912562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):90, 95

               
               
               Conread position:104-311
               
               
               Cow position:chr14:29239163-29238966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:105-308
               
               
               Cow position:chr14:48762396-48762207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:110-304
               
               
               Cow position:chr14:33326608-33326789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:110-311
               
               
               Cow position:chr14:28272543-28272732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:119-318
               
               
               Cow position:chr14:27312407-27312213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):174, 72

               
               
               Conread position:120-311
               
               
               Cow position:chr14:5639384-5639568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:130-301
               
               
               Cow position:chr14:37109788-37109946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:145-307
               
               
               Cow position:chr14:4356880-4357053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):55, 29

               
               
               Conread position:192-307
               
               
               Cow position:chr14:42435457-42435344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):51, 78

               
               
               Conread position:1-176
               
               
               Cow position:chr15:78739-78558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):48, 37

               
               
               Conread position:1-178
               
               
               Cow position:chr15:23768091-23768275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):20, 44

               
               
               Conread position:1-179
               
               
               Cow position:chr15:43599355-43599170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 42

               
               
               Conread position:1-185
               
               
               Cow position:chr15:45584891-45584708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):54, 42

               
               
               Conread position:1-187
               
               
               Cow position:chr15:23798356-23798557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:1-187
               
               
               Cow position:chr15:29810285-29810097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 43

               
               
               Conread position:1-188
               
               
               Cow position:chr15:16112567-16112372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:1-189
               
               
               Cow position:chr15:14988157-14987961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):52, 125

               
               
               Conread position:1-189
               
               
               Cow position:chr15:16908599-16908404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 45

               
               
               Conread position:1-189
               
               
               Cow position:chr15:24031356-24031170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):92, 42

               
               
               Conread position:1-195
               
               
               Cow position:chr15:17084381-17084174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1-195
               
               
               Cow position:chr15:30982098-30981908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):92, 23

               
               
               Conread position:1-196
               
               
               Cow position:chr15:25350139-25349936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):18, 41

               
               
               Conread position:1-198
               
               
               Cow position:chr15:13285186-13284984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):21, 169

               
               
               Conread position:1-198
               
               
               Cow position:chr15:31560229-31560427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):21, 97

               
               
               Conread position:1-201
               
               
               Cow position:chr15:22939151-22939366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-201
               
               
               Cow position:chr15:28924592-28924797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):52, 18

               
               
               Conread position:1-201
               
               
               Cow position:chr15:36353836-36353627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr15:15041261-15041471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):48, 30

               
               
               Conread position:1-207
               
               
               Cow position:chr15:20487040-20487250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):56, 37

               
               
               Conread position:1-207
               
               
               Cow position:chr15:20534278-20534497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr15:22938597-22938811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr15:32324033-32324252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):18, 124

               
               
               Conread position:1-207
               
               
               Cow position:chr15:36793319-36793541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr15:39405903-39405698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):92, 41

               
               
               Conread position:1-208
               
               
               Cow position:chr15:21608557-21608766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):25, 36

               
               
               Conread position:1-209
               
               
               Cow position:chr15:16583532-16583739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):58, 31

               
               
               Conread position:1-215
               
               
               Cow position:chr15:39286239-39286461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):18, 166

               
               
               Conread position:1-231
               
               
               Cow position:chr15:39316664-39316911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):24, 209

               
               
               Conread position:1-301
               
               
               Cow position:chr15:4509652-4509925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):90, 7

               
               
               Conread position:1-310
               
               
               Cow position:chr15:10737575-10737896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):18, 157

               
               
               Conread position:1-311
               
               
               Cow position:chr15:2141128-2141438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 207

               
               
               Conread position:1-311
               
               
               Cow position:chr15:22136851-22136550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):47, 97

               
               
               Conread position:1-316
               
               
               Cow position:chr15:36782160-36782487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):42, 143

               
               
               Conread position:1-322
               
               
               Cow position:chr15:33976515-33976847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):19, 234

               
               
               Conread position:2-207
               
               
               Cow position:chr15:31028492-31028704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):50, 21

               
               
               Conread position:2-208
               
               
               Cow position:chr15:22531830-22531622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):23, 114

               
               
               Conread position:2-300
               
               
               Cow position:chr15:6427466-6427752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):48, 148

               
               
               Conread position:3-195
               
               
               Cow position:chr15:22553375-22553575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):46, 186

               
               
               Conread position:3-201
               
               
               Cow position:chr15:20722825-20723026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):85, 179

               
               
               Conread position:3-220
               
               
               Cow position:chr15:47042462-47042691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 66

               
               
               Conread position:3-311
               
               
               Cow position:chr15:29604538-29604840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):16, 52

               
               
               Conread position:4-206
               
               
               Cow position:chr15:32977682-32977893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:4-321
               
               
               Cow position:chr15:40999913-41000227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):89, 46

               
               
               Conread position:5-176
               
               
               Cow position:chr15:35425652-35425825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 91

               
               
               Conread position:5-177
               
               
               Cow position:chr15:50322757-50322577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:5-178
               
               
               Cow position:chr15:39326353-39326535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):50, 77

               
               
               Conread position:5-180
               
               
               Cow position:chr15:20472384-20472568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-182
               
               
               Cow position:chr15:18018085-18017907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 44

               
               
               Conread position:5-182
               
               
               Cow position:chr15:20422618-20422800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):40, 91

               
               
               Conread position:5-184
               
               
               Cow position:chr15:11559194-11559379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):35, 55

               
               
               Conread position:5-184
               
               
               Cow position:chr15:50089145-50088956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):43, 148

               
               
               Conread position:5-186
               
               
               Cow position:chr15:28258294-28258483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-187
               
               
               Cow position:chr15:10512107-10512293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):22, 33

               
               
               Conread position:5-187
               
               
               Cow position:chr15:17233353-17233166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-187
               
               
               Cow position:chr15:31857750-31857564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:5-188
               
               
               Cow position:chr15:4918905-4919094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:5-188
               
               
               Cow position:chr15:5930052-5929869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):59, 30

               
               
               Conread position:5-189
               
               
               Cow position:chr15:5717874-5717684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):43, 155

               
               
               Conread position:5-190
               
               
               Cow position:chr15:16603984-16603795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):38, 80

               
               
               Conread position:5-195
               
               
               Cow position:chr15:2144969-2145173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):45, 91

               
               
               Conread position:5-195
               
               
               Cow position:chr15:10088479-10088282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-196
               
               
               Cow position:chr15:85089-85280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):57, 37

               
               
               Conread position:5-196
               
               
               Cow position:chr15:5719646-5719844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 185

               
               
               Conread position:5-196
               
               
               Cow position:chr15:22532399-22532216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):105, 33

               
               
               Conread position:5-197
               
               
               Cow position:chr15:49922297-49922097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr15:9107197-9106996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):44, 158

               
               
               Conread position:5-198
               
               
               Cow position:chr15:14176338-14176537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:161
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr15:19771293-19771098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):47, 90

               
               
               Conread position:5-198
               
               
               Cow position:chr15:26919114-26919313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr15:30470808-30471010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr15:34140147-34139943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):48, 160

               
               
               Conread position:5-198
               
               
               Cow position:chr15:34284250-34284449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):54, 19

               
               
               Conread position:5-200
               
               
               Cow position:chr15:16927935-16928134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):46, 58

               
               
               Conread position:5-200
               
               
               Cow position:chr15:32226706-32226913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr15:4418241-4418440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):88, 169

               
               
               Conread position:5-201
               
               
               Cow position:chr15:21893943-21893738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr15:21941682-21941886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):43, 122

               
               
               Conread position:5-201
               
               
               Cow position:chr15:30001846-30001652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):89, 30

               
               
               Conread position:5-201
               
               
               Cow position:chr15:41527815-41528013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):41, 88

               
               
               Conread position:5-201
               
               
               Cow position:chr15:43788413-43788221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):48, 21

               
               
               Conread position:5-204
               
               
               Cow position:chr15:5408743-5408941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):58, 93

               
               
               Conread position:5-204
               
               
               Cow position:chr15:35112720-35112922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):58, 50

               
               
               Conread position:5-204
               
               
               Cow position:chr15:37381783-37381582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):88, 107

               
               
               Conread position:5-204
               
               
               Cow position:chr15:49274113-49273915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):48, 38

               
               
               Conread position:5-207
               
               
               Cow position:chr15:4138294-4138090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):36, 110

               
               
               Conread position:5-207
               
               
               Cow position:chr15:5158536-5158327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr15:16667337-16667542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 125

               
               
               Conread position:5-207
               
               
               Cow position:chr15:27900347-27900557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:165
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr15:42888676-42888879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 89

               
               
               Conread position:5-207
               
               
               Cow position:chr15:52482667-52482873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):48, 32

               
               
               Conread position:5-207
               
               
               Cow position:chr15:53164182-53163976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):48, 32

               
               
               Conread position:5-208
               
               
               Cow position:chr15:17100549-17100754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):53, 115

               
               
               Conread position:5-208
               
               
               Cow position:chr15:35204987-35205199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):75, 180

               
               
               Conread position:5-208
               
               
               Cow position:chr15:37865531-37865318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-209
               
               
               Cow position:chr15:1329941-1330151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):53, 197

               
               
               Conread position:5-209
               
               
               Cow position:chr15:11995865-11996072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:5-209
               
               
               Cow position:chr15:38883313-38883100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-210
               
               
               Cow position:chr15:24616733-24616522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):59, 45

               
               
               Conread position:5-212
               
               
               Cow position:chr15:12813-12596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):46, 33

               
               
               Conread position:5-212
               
               
               Cow position:chr15:21803499-21803710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):41, 103

               
               
               Conread position:5-213
               
               
               Cow position:chr15:10608144-10608358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):53, 160

               
               
               Conread position:5-215
               
               
               Cow position:chr15:6970150-6969941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):53, 152

               
               
               Conread position:5-217
               
               
               Cow position:chr15:5071937-5072143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):107, 38

               
               
               Conread position:5-220
               
               
               Cow position:chr15:29331166-29330948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):20, 81

               
               
               Conread position:5-221
               
               
               Cow position:chr15:35945690-35945468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):48, 161

               
               
               Conread position:5-223
               
               
               Cow position:chr15:13554515-13554295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):54, 182

               
               
               Conread position:5-223
               
               
               Cow position:chr15:23779910-23780128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 146

               
               
               Conread position:5-229
               
               
               Cow position:chr15:22871767-22871545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:5-244
               
               
               Cow position:chr15:51898391-51898141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:5-300
               
               
               Cow position:chr15:5726485-5726209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):46, 178

               
               
               Conread position:5-304
               
               
               Cow position:chr15:49258024-49257724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):58, 11

               
               
               Conread position:5-304
               
               
               Cow position:chr15:50302345-50302036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):58, 133

               
               
               Conread position:5-309
               
               
               Cow position:chr15:42788986-42789286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):37, 182

               
               
               Conread position:5-311
               
               
               Cow position:chr15:35440914-35441231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 109

               
               
               Conread position:5-315
               
               
               Cow position:chr15:21389007-21389313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 108

               
               
               Conread position:5-317
               
               
               Cow position:chr15:34207028-34207330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):24, 88

               
               
               Conread position:6-195
               
               
               Cow position:chr15:9497337-9497535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:6-198
               
               
               Cow position:chr15:38859966-38860167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):16, 34

               
               
               Conread position:6-207
               
               
               Cow position:chr15:24452906-24453121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 195

               
               
               Conread position:6-208
               
               
               Cow position:chr15:39621501-39621290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:7-176
               
               
               Cow position:chr15:20351990-20351816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:7-187
               
               
               Cow position:chr15:41418670-41418856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):14, 90

               
               
               Conread position:7-195
               
               
               Cow position:chr15:19920175-19920368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:7-196
               
               
               Cow position:chr15:26911917-26912108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):45, 100

               
               
               Conread position:7-199
               
               
               Cow position:chr15:19807558-19807758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:7-206
               
               
               Cow position:chr15:12655754-12655963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:7-208
               
               
               Cow position:chr15:36391834-36391626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:7-209
               
               
               Cow position:chr15:4295925-4295715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):26, 182

               
               
               Conread position:7-209
               
               
               Cow position:chr15:12723246-12723040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):70, 80

               
               
               Conread position:12-198
               
               
               Cow position:chr15:23275692-23275504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):26, 39

               
               
               Conread position:13-198
               
               
               Cow position:chr15:46563334-46563520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):46, 12

               
               
               Conread position:13-212
               
               
               Cow position:chr15:25650267-25650462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):77, 25

               
               
               Conread position:13-298
               
               
               Cow position:chr15:5044325-5044624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):15, 32

               
               
               Conread position:13-300
               
               
               Cow position:chr15:5535212-5535490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):73, 21

               
               
               Conread position:14-207
               
               
               Cow position:chr15:23572531-23572733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):7, 64

               
               
               Conread position:14-321
               
               
               Cow position:chr15:50660783-50660474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):33, 181

               
               
               Conread position:15-172
               
               
               Cow position:chr15:4076476-4076310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):40, 23

               
               
               Conread position:15-201
               
               
               Cow position:chr15:31928745-31928939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:15-201
               
               
               Cow position:chr15:36435356-36435164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:15-206
               
               
               Cow position:chr15:25322596-25322793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 174

               
               
               Conread position:15-217
               
               
               Cow position:chr15:26718769-26718977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):36, 23

               
               
               Conread position:15-221
               
               
               Cow position:chr15:44280254-44280041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):39, 28

               
               
               Conread position:15-311
               
               
               Cow position:chr15:17664097-17664413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):78, 35

               
               
               Conread position:17-157
               
               
               Cow position:chr15:225652-225801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:17-204
               
               
               Cow position:chr15:52126542-52126737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:19-184
               
               
               Cow position:chr15:8665445-8665624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:19-198
               
               
               Cow position:chr15:45269-45462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 24

               
               
               Conread position:19-198
               
               
               Cow position:chr15:31025139-31024955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:19-201
               
               
               Cow position:chr15:6647601-6647409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:19-207
               
               
               Cow position:chr15:17196292-17196101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:19-304
               
               
               Cow position:chr15:17162338-17162067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:221
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):68, 44

               
               
               Conread position:20-156
               
               
               Cow position:chr15:53231643-53231506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):73, 23

               
               
               Conread position:20-178
               
               
               Cow position:chr15:1857873-1857706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:20-186
               
               
               Cow position:chr15:6905681-6905507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:20-187
               
               
               Cow position:chr15:1804189-1804365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:20-188
               
               
               Cow position:chr15:21421085-21420913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):28, 145

               
               
               Conread position:20-188
               
               
               Cow position:chr15:21821779-21821952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:20-188
               
               
               Cow position:chr15:27973071-27973245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):26, 166

               
               
               Conread position:20-195
               
               
               Cow position:chr15:2968484-2968302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-195
               
               
               Cow position:chr15:38827178-38827359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:20-197
               
               
               Cow position:chr15:19950622-19950442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):51, 125

               
               
               Conread position:20-198
               
               
               Cow position:chr15:1297884-1297701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):39, 18

               
               
               Conread position:20-198
               
               
               Cow position:chr15:5234855-5235035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):29, 87

               
               
               Conread position:20-198
               
               
               Cow position:chr15:28823668-28823857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 113

               
               
               Conread position:20-201
               
               
               Cow position:chr15:18671306-18671495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):29, 139

               
               
               Conread position:20-204
               
               
               Cow position:chr15:794868-795064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):31, 185

               
               
               Conread position:20-204
               
               
               Cow position:chr15:43114575-43114765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):26, 101

               
               
               Conread position:20-204
               
               
               Cow position:chr15:44658503-44658319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):64, 135

               
               
               Conread position:20-207
               
               
               Cow position:chr15:608291-608099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):28, 18

               
               
               Conread position:20-207
               
               
               Cow position:chr15:20459158-20459355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr15:35642165-35641968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):32, 133

               
               
               Conread position:20-208
               
               
               Cow position:chr15:39599588-39599400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):26, 39

               
               
               Conread position:20-209
               
               
               Cow position:chr15:38935554-38935360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:20-214
               
               
               Cow position:chr15:286628-286422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:20-215
               
               
               Cow position:chr15:19186474-19186668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):73, 103

               
               
               Conread position:20-221
               
               
               Cow position:chr15:12870718-12870925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:20-224
               
               
               Cow position:chr15:24797665-24797869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):26, 39

               
               
               Conread position:20-301
               
               
               Cow position:chr15:6272741-6273020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:217
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):28, 6

               
               
               Conread position:21-175
               
               
               Cow position:chr15:47843102-47843266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:21-187
               
               
               Cow position:chr15:31043015-31042841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):29, 155

               
               
               Conread position:21-204
               
               
               Cow position:chr15:20370311-20370499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):9, 22

               
               
               Conread position:21-207
               
               
               Cow position:chr15:43626613-43626421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):27, 164

               
               
               Conread position:22-179
               
               
               Cow position:chr15:15573686-15573854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 21

               
               
               Conread position:22-198
               
               
               Cow position:chr15:32234186-32234365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 16

               
               
               Conread position:22-204
               
               
               Cow position:chr15:36773555-36773735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):37, 21

               
               
               Conread position:23-201
               
               
               Cow position:chr15:19553779-19553964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):29, 165

               
               
               Conread position:23-216
               
               
               Cow position:chr15:26573521-26573325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):29, 147

               
               
               Conread position:24-209
               
               
               Cow position:chr15:42381066-42380881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:24-307
               
               
               Cow position:chr15:14281694-14281422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 165

               
               
               Conread position:26-192
               
               
               Cow position:chr15:9781606-9781439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):34, 80

               
               
               Conread position:26-206
               
               
               Cow position:chr15:12785566-12785384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):27, 12

               
               
               Conread position:26-303
               
               
               Cow position:chr15:8549343-8549607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):27, 160

               
               
               Conread position:28-206
               
               
               Cow position:chr15:36388431-36388245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:30-192
               
               
               Cow position:chr15:37205182-37205015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):28, 13

               
               
               Conread position:31-202
               
               
               Cow position:chr15:53300227-53300398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):26, 63

               
               
               Conread position:31-216
               
               
               Cow position:chr15:52432477-52432287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):60, 14

               
               
               Conread position:32-200
               
               
               Cow position:chr15:41583015-41582842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):26, 11

               
               
               Conread position:34-186
               
               
               Cow position:chr15:29542004-29541852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):59, 9

               
               
               Conread position:35-207
               
               
               Cow position:chr15:26158472-26158643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):58, 11

               
               
               Conread position:36-200
               
               
               Cow position:chr15:26851099-26851271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):57, 26

               
               
               Conread position:36-204
               
               
               Cow position:chr15:47843965-47844137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:37-209
               
               
               Cow position:chr15:31637428-31637253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):51, 147

               
               
               Conread position:38-196
               
               
               Cow position:chr15:49491771-49491611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):27, 119

               
               
               Conread position:38-201
               
               
               Cow position:chr15:2953008-2953175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):8, 27

               
               
               Conread position:38-311
               
               
               Cow position:chr15:11388669-11388940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):10, 33

               
               
               Conread position:39-194
               
               
               Cow position:chr15:50333105-50332948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):54, 144

               
               
               Conread position:39-198
               
               
               Cow position:chr15:244905-244742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):54, 23

               
               
               Conread position:39-207
               
               
               Cow position:chr15:9979226-9979056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):13, 93

               
               
               Conread position:39-208
               
               
               Cow position:chr15:20856352-20856524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 26

               
               
               Conread position:39-212
               
               
               Cow position:chr15:50341237-50341068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):149, 54

               
               
               Conread position:40-163
               
               
               Cow position:chr15:38846024-38845898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):53, 17

               
               
               Conread position:40-206
               
               
               Cow position:chr15:24629242-24629412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):53, 17

               
               
               Conread position:40-208
               
               
               Cow position:chr15:9465800-9465629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:40-215
               
               
               Cow position:chr15:10660431-10660610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):53, 171

               
               
               Conread position:41-208
               
               
               Cow position:chr15:16616310-16616145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):14, 61

               
               
               Conread position:44-209
               
               
               Cow position:chr15:26896578-26896743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):49, 10

               
               
               Conread position:44-210
               
               
               Cow position:chr15:39619260-39619094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):32, 13

               
               
               Conread position:44-267
               
               
               Cow position:chr15:14261140-14261369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:176
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:45-208
               
               
               Cow position:chr15:1284390-1284214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:45-211
               
               
               Cow position:chr15:21903292-21903459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 17

               
               
               Conread position:45-301
               
               
               Cow position:chr15:23719362-23719610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):13, 148

               
               
               Conread position:46-198
               
               
               Cow position:chr15:8354158-8354004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:46-200
               
               
               Cow position:chr15:31495106-31495265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):42, 23

               
               
               Conread position:46-207
               
               
               Cow position:chr15:38652484-38652647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):47, 11

               
               
               Conread position:47-204
               
               
               Cow position:chr15:27063405-27063565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 15

               
               
               Conread position:50-309
               
               
               Cow position:chr15:27016137-27016387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:51-311
               
               
               Cow position:chr15:46868602-46868870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):42, 93

               
               
               Conread position:52-311
               
               
               Cow position:chr15:47592562-47592805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):41, 10

               
               
               Conread position:53-317
               
               
               Cow position:chr15:4904100-4903846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):40, 56

               
               
               Conread position:56-201
               
               
               Cow position:chr15:39473827-39473973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):37, 56

               
               
               Conread position:57-179
               
               
               Cow position:chr15:4248255-4248129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:57-188
               
               
               Cow position:chr15:6128859-6128991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):29, 98

               
               
               Conread position:57-198
               
               
               Cow position:chr15:26529997-26529852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-206
               
               
               Cow position:chr15:6037348-6037497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):36, 126

               
               
               Conread position:57-207
               
               
               Cow position:chr15:22443881-22444031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):34, 48

               
               
               Conread position:57-209
               
               
               Cow position:chr15:48095467-48095312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):30, 53

               
               
               Conread position:57-215
               
               
               Cow position:chr15:15154407-15154246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):36, 106

               
               
               Conread position:57-216
               
               
               Cow position:chr15:22984681-22984523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):30, 94

               
               
               Conread position:57-223
               
               
               Cow position:chr15:51632956-51633120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):20, 12

               
               
               Conread position:57-294
               
               
               Cow position:chr15:5567031-5566779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):34, 79

               
               
               Conread position:57-301
               
               
               Cow position:chr15:18776644-18776878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):36, 137

               
               
               Conread position:58-291
               
               
               Cow position:chr15:48590139-48590378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):32, 47

               
               
               Conread position:58-309
               
               
               Cow position:chr15:10431919-10431670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):32, 123

               
               
               Conread position:59-196
               
               
               Cow position:chr15:3690455-3690314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:59-206
               
               
               Cow position:chr15:40368395-40368244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:61-198
               
               
               Cow position:chr15:51375085-51375227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:61-217
               
               
               Cow position:chr15:39520271-39520110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:62-208
               
               
               Cow position:chr15:4485256-4485107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):26, 132

               
               
               Conread position:62-288
               
               
               Cow position:chr15:21166323-21166548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):17, 122

               
               
               Conread position:62-308
               
               
               Cow position:chr15:31175892-31175649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):31, 70

               
               
               Conread position:64-207
               
               
               Cow position:chr15:38420453-38420599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:66-204
               
               
               Cow position:chr15:36458104-36458245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):22, 139

               
               
               Conread position:67-189
               
               
               Cow position:chr15:20487989-20488116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:67-189
               
               
               Cow position:chr15:44853341-44853215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:67-207
               
               
               Cow position:chr15:46364869-46364727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):26, 68

               
               
               Conread position:72-304
               
               
               Cow position:chr15:51701212-51701434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):21, 62

               
               
               Conread position:78-219
               
               
               Cow position:chr15:12357701-12357560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):9, 101

               
               
               Conread position:79-200
               
               
               Cow position:chr15:29793110-29793233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:80-194
               
               
               Cow position:chr15:12966724-12966613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):30, 38

               
               
               Conread position:80-198
               
               
               Cow position:chr15:36849254-36849140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:81-209
               
               
               Cow position:chr15:12913420-12913549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):109, 23

               
               
               Conread position:81-215
               
               
               Cow position:chr15:4500784-4500648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:82-202
               
               
               Cow position:chr15:16230302-16230183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):5, 100

               
               
               Conread position:84-304
               
               
               Cow position:chr15:28788292-28788079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):159, 102

               
               
               Conread position:85-201
               
               
               Cow position:chr15:48052528-48052645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:86-308
               
               
               Cow position:chr15:12264515-12264725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):34, 7

               
               
               Conread position:86-312
               
               
               Cow position:chr15:13251177-13250951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:178
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):101, 22

               
               
               Conread position:87-219
               
               
               Cow position:chr15:42190519-42190386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:88-304
               
               
               Cow position:chr15:10335828-10335623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 38

               
               
               Conread position:92-209
               
               
               Cow position:chr15:16911596-16911711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:93-204
               
               
               Cow position:chr15:45574568-45574679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):17, 68

               
               
               Conread position:94-207
               
               
               Cow position:chr15:16644719-16644833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:95-224
               
               
               Cow position:chr15:23927816-23927948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:95-251
               
               
               Cow position:chr15:10074025-10073869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):127, 14

               
               
               Conread position:96-259
               
               
               Cow position:chr15:20725851-20726013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):15, 143

               
               
               Conread position:97-307
               
               
               Cow position:chr15:13613644-13613439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):205, 9

               
               
               Conread position:100-312
               
               
               Cow position:chr15:16703915-16703699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):10, 165

               
               
               Conread position:109-222
               
               
               Cow position:chr15:34145204-34145320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:119-308
               
               
               Cow position:chr15:47058787-47058611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:126-310
               
               
               Cow position:chr15:4407053-4406871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):67, 147

               
               
               Conread position:129-304
               
               
               Cow position:chr15:11268716-11268543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:193-308
               
               
               Cow position:chr15:2140891-2140775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:217-316
               
               
               Cow position:chr15:4534550-4534452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:1-149
               
               
               Cow position:chr16:35195687-35195534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:1-179
               
               
               Cow position:chr16:29095853-29096030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):19, 46

               
               
               Conread position:1-179
               
               
               Cow position:chr16:48398337-48398145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):16, 74

               
               
               Conread position:1-184
               
               
               Cow position:chr16:8768726-8768907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr16:3246289-3246089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr16:33198519-33198323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):24, 41

               
               
               Conread position:1-186
               
               
               Cow position:chr16:39165163-39165355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:156
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-187
               
               
               Cow position:chr16:52855102-52854905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 44

               
               
               Conread position:1-188
               
               
               Cow position:chr16:33704728-33704924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):22, 78

               
               
               Conread position:1-194
               
               
               Cow position:chr16:50289071-50289274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):21, 170

               
               
               Conread position:1-198
               
               
               Cow position:chr16:13306948-13306744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):24, 75

               
               
               Conread position:1-198
               
               
               Cow position:chr16:46552722-46552921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):18, 46

               
               
               Conread position:1-198
               
               
               Cow position:chr16:54579085-54579294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:1-201
               
               
               Cow position:chr16:11806591-11806803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:1-201
               
               
               Cow position:chr16:24702776-24702981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 168

               
               
               Conread position:1-201
               
               
               Cow position:chr16:33405574-33405363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:1-201
               
               
               Cow position:chr16:43308640-43308432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):16, 88

               
               
               Conread position:1-201
               
               
               Cow position:chr16:44210641-44210427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):42, 194

               
               
               Conread position:1-205
               
               
               Cow position:chr16:35758127-35758338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr16:8448724-8448518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):58, 111

               
               
               Conread position:1-207
               
               
               Cow position:chr16:38663792-38663574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):18, 132

               
               
               Conread position:1-208
               
               
               Cow position:chr16:53086415-53086202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):27, 90

               
               
               Conread position:1-209
               
               
               Cow position:chr16:8193371-8193591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):17, 158

               
               
               Conread position:1-209
               
               
               Cow position:chr16:26030961-26030742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):52, 38

               
               
               Conread position:1-215
               
               
               Cow position:chr16:4192501-4192291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):58, 95

               
               
               Conread position:1-215
               
               
               Cow position:chr16:22327424-22327653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):51, 6

               
               
               Conread position:1-218
               
               
               Cow position:chr16:17135651-17135872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):54, 41

               
               
               Conread position:1-219
               
               
               Cow position:chr16:34998700-34998475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):18, 115

               
               
               Conread position:1-223
               
               
               Cow position:chr16:35296989-35297234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-227
               
               
               Cow position:chr16:13689586-13689822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:1-262
               
               
               Cow position:chr16:21317674-21317395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:1-304
               
               
               Cow position:chr16:17945441-17945741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):24, 39

               
               
               Conread position:2-189
               
               
               Cow position:chr16:29655240-29655444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:2-190
               
               
               Cow position:chr16:22919389-22919587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):20, 74

               
               
               Conread position:2-192
               
               
               Cow position:chr16:22206992-22207199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):10, 142

               
               
               Conread position:3-207
               
               
               Cow position:chr16:32302079-32301869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):56, 40

               
               
               Conread position:4-190
               
               
               Cow position:chr16:4399663-4399855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:4-198
               
               
               Cow position:chr16:30601344-30601549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):44, 19

               
               
               Conread position:5-147
               
               
               Cow position:chr16:33596006-33595860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 53

               
               
               Conread position:5-168
               
               
               Cow position:chr16:13648264-13648425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):82, 103

               
               
               Conread position:5-170
               
               
               Cow position:chr16:38905301-38905134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):86, 33

               
               
               Conread position:5-172
               
               
               Cow position:chr16:25965430-25965601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 92

               
               
               Conread position:5-173
               
               
               Cow position:chr16:52889482-52889308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:5-176
               
               
               Cow position:chr16:36121052-36120877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:5-176
               
               
               Cow position:chr16:38091297-38091117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):41, 140

               
               
               Conread position:5-179
               
               
               Cow position:chr16:27160938-27160755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-179
               
               
               Cow position:chr16:38119517-38119341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):88, 22

               
               
               Conread position:5-179
               
               
               Cow position:chr16:41697158-41696983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):89, 32

               
               
               Conread position:5-184
               
               
               Cow position:chr16:23564065-23564246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):50, 38

               
               
               Conread position:5-184
               
               
               Cow position:chr16:23738107-23738294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):44, 19

               
               
               Conread position:5-186
               
               
               Cow position:chr16:56510281-56510098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):58, 108

               
               
               Conread position:5-188
               
               
               Cow position:chr16:2417662-2417471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 166

               
               
               Conread position:5-188
               
               
               Cow position:chr16:19047508-19047316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:5-188
               
               
               Cow position:chr16:40514553-40514364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:5-189
               
               
               Cow position:chr16:8017895-8018087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr16:8933496-8933309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):59, 38

               
               
               Conread position:5-189
               
               
               Cow position:chr16:14685462-14685271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr16:30186571-30186761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):50, 38

               
               
               Conread position:5-189
               
               
               Cow position:chr16:50667213-50667409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 186

               
               
               Conread position:5-189
               
               
               Cow position:chr16:51869568-51869758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 32

               
               
               Conread position:5-189
               
               
               Cow position:chr16:53830658-53830473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):43, 94

               
               
               Conread position:5-189
               
               
               Cow position:chr16:56565525-56565715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:5-192
               
               
               Cow position:chr16:10148208-10148404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-192
               
               
               Cow position:chr16:42340123-42340318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-192
               
               
               Cow position:chr16:54226671-54226478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):37, 112

               
               
               Conread position:5-194
               
               
               Cow position:chr16:8323055-8322860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 170

               
               
               Conread position:5-195
               
               
               Cow position:chr16:30359133-30358938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):33, 54

               
               
               Conread position:5-195
               
               
               Cow position:chr16:48385473-48385279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 105

               
               
               Conread position:5-196
               
               
               Cow position:chr16:4910599-4910399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:5-196
               
               
               Cow position:chr16:10032567-10032764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:5-196
               
               
               Cow position:chr16:37452688-37452488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-197
               
               
               Cow position:chr16:11775121-11774918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:5-197
               
               
               Cow position:chr16:12633814-12634012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):19, 39

               
               
               Conread position:5-197
               
               
               Cow position:chr16:23472675-23472874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):43, 174

               
               
               Conread position:5-198
               
               
               Cow position:chr16:238193-238395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):41, 120

               
               
               Conread position:5-198
               
               
               Cow position:chr16:14242298-14242495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):56, 129

               
               
               Conread position:5-198
               
               
               Cow position:chr16:14754395-14754195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):74, 38

               
               
               Conread position:5-198
               
               
               Cow position:chr16:21381634-21381439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):50, 31

               
               
               Conread position:5-198
               
               
               Cow position:chr16:33134869-33135065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:5-198
               
               
               Cow position:chr16:35623314-35623121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):54, 18

               
               
               Conread position:5-198
               
               
               Cow position:chr16:40562158-40562359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):47, 93

               
               
               Conread position:5-198
               
               
               Cow position:chr16:49229845-49229643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):44, 174

               
               
               Conread position:5-198
               
               
               Cow position:chr16:56665501-56665702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):49, 184

               
               
               Conread position:5-198
               
               
               Cow position:chr16:56796738-56796538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:160
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-199
               
               
               Cow position:chr16:12361049-12360843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):41, 198

               
               
               Conread position:5-199
               
               
               Cow position:chr16:29766265-29766453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):94, 45

               
               
               Conread position:5-200
               
               
               Cow position:chr16:35188182-35188377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):53, 140

               
               
               Conread position:5-200
               
               
               Cow position:chr16:42734088-42733881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr16:13578934-13578730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr16:18205888-18206089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):54, 71

               
               
               Conread position:5-201
               
               
               Cow position:chr16:22380426-22380223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):58, 48

               
               
               Conread position:5-201
               
               
               Cow position:chr16:25170321-25170525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr16:29037839-29038045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):41, 99

               
               
               Conread position:5-201
               
               
               Cow position:chr16:48545748-48545952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr16:50453690-50453895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):48, 38

               
               
               Conread position:5-201
               
               
               Cow position:chr16:51598678-51598482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):92, 33

               
               
               Conread position:5-204
               
               
               Cow position:chr16:820176-820388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-204
               
               
               Cow position:chr16:1548947-1548744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):53, 33

               
               
               Conread position:5-204
               
               
               Cow position:chr16:22984685-22984887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:5-204
               
               
               Cow position:chr16:26676759-26676552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-204
               
               
               Cow position:chr16:44428807-44429017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-204
               
               
               Cow position:chr16:48145475-48145269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):41, 80

               
               
               Conread position:5-204
               
               
               Cow position:chr16:49336156-49336357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 108

               
               
               Conread position:5-205
               
               
               Cow position:chr16:1220255-1220046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):53, 186

               
               
               Conread position:5-205
               
               
               Cow position:chr16:20633951-20633740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):41, 73

               
               
               Conread position:5-206
               
               
               Cow position:chr16:12501234-12501027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):16, 128

               
               
               Conread position:5-207
               
               
               Cow position:chr16:7442172-7441966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):50, 144

               
               
               Conread position:5-207
               
               
               Cow position:chr16:7665564-7665774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr16:10592362-10592569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):55, 41

               
               
               Conread position:5-207
               
               
               Cow position:chr16:18757912-18757702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr16:45609918-45610122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:5-208
               
               
               Cow position:chr16:10773060-10773256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 87

               
               
               Conread position:5-208
               
               
               Cow position:chr16:18052258-18052468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):46, 137

               
               
               Conread position:5-208
               
               
               Cow position:chr16:42240977-42241186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:5-209
               
               
               Cow position:chr16:13969444-13969228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-209
               
               
               Cow position:chr16:46548351-46548130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:5-209
               
               
               Cow position:chr16:50282498-50282293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):86, 38

               
               
               Conread position:5-209
               
               
               Cow position:chr16:56082435-56082228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):47, 192

               
               
               Conread position:5-210
               
               
               Cow position:chr16:43800991-43800779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):16, 12

               
               
               Conread position:5-213
               
               
               Cow position:chr16:7619250-7619042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):51, 92

               
               
               Conread position:5-213
               
               
               Cow position:chr16:15960364-15960147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-213
               
               
               Cow position:chr16:53792891-53792676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):32, 60

               
               
               Conread position:5-214
               
               
               Cow position:chr16:10945503-10945299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):82, 40

               
               
               Conread position:5-214
               
               
               Cow position:chr16:56670993-56670775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):44, 25

               
               
               Conread position:5-215
               
               
               Cow position:chr16:9905018-9905232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:5-218
               
               
               Cow position:chr16:4857174-4856955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):38, 211

               
               
               Conread position:5-221
               
               
               Cow position:chr16:43275949-43276164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):52, 82

               
               
               Conread position:5-222
               
               
               Cow position:chr16:29608446-29608661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):94, 33

               
               
               Conread position:5-231
               
               
               Cow position:chr16:22804671-22804441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):41, 69

               
               
               Conread position:5-237
               
               
               Cow position:chr16:41689624-41689861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):55, 38

               
               
               Conread position:5-237
               
               
               Cow position:chr16:43674802-43675039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):54, 28

               
               
               Conread position:5-274
               
               
               Cow position:chr16:9500444-9500714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):42, 184

               
               
               Conread position:5-301
               
               
               Cow position:chr16:16402393-16402122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):41, 101

               
               
               Conread position:5-302
               
               
               Cow position:chr16:14758661-14758972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):42, 232

               
               
               Conread position:5-304
               
               
               Cow position:chr16:3114465-3114768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):49, 195

               
               
               Conread position:5-304
               
               
               Cow position:chr16:7498988-7499300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:230
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):16, 12

               
               
               Conread position:5-305
               
               
               Cow position:chr16:28833764-28834073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):41, 189

               
               
               Conread position:5-307
               
               
               Cow position:chr16:8273910-8273612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 183

               
               
               Conread position:5-309
               
               
               Cow position:chr16:7549894-7550216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 140

               
               
               Conread position:5-309
               
               
               Cow position:chr16:54083963-54084291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):54, 41

               
               
               Conread position:5-310
               
               
               Cow position:chr16:5415830-5415539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):54, 91

               
               
               Conread position:5-310
               
               
               Cow position:chr16:30143277-30142964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):41, 161

               
               
               Conread position:5-311
               
               
               Cow position:chr16:6319128-6319435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):41, 208

               
               
               Conread position:5-311
               
               
               Cow position:chr16:22842131-22841840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):52, 21

               
               
               Conread position:5-319
               
               
               Cow position:chr16:17626858-17627166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):38, 171

               
               
               Conread position:6-188
               
               
               Cow position:chr16:26610567-26610757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:6-188
               
               
               Cow position:chr16:44744205-44744015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:6-189
               
               
               Cow position:chr16:9552989-9553176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 54

               
               
               Conread position:6-194
               
               
               Cow position:chr16:34754032-34753836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):49, 32

               
               
               Conread position:6-196
               
               
               Cow position:chr16:25380565-25380369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:6-196
               
               
               Cow position:chr16:36286753-36286557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:6-197
               
               
               Cow position:chr16:54664872-54664672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:6-198
               
               
               Cow position:chr16:11957655-11957449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:6-198
               
               
               Cow position:chr16:19670421-19670225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):49, 37

               
               
               Conread position:6-198
               
               
               Cow position:chr16:51112948-51112752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:6-201
               
               
               Cow position:chr16:25839547-25839751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:6-207
               
               
               Cow position:chr16:28444561-28444353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:6-244
               
               
               Cow position:chr16:6344514-6344274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):49, 117

               
               
               Conread position:7-164
               
               
               Cow position:chr16:50521407-50521570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):56, 36

               
               
               Conread position:7-189
               
               
               Cow position:chr16:7152242-7152053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):41, 135

               
               
               Conread position:7-196
               
               
               Cow position:chr16:40700799-40700611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 88

               
               
               Conread position:7-198
               
               
               Cow position:chr16:48095834-48095636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:7-200
               
               
               Cow position:chr16:41530361-41530170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):86, 44

               
               
               Conread position:7-204
               
               
               Cow position:chr16:42242186-42241986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 136

               
               
               Conread position:7-220
               
               
               Cow position:chr16:18354031-18353805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:7-222
               
               
               Cow position:chr16:13611524-13611303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):38, 178

               
               
               Conread position:7-227
               
               
               Cow position:chr16:6269888-6270111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):79, 36

               
               
               Conread position:7-288
               
               
               Cow position:chr16:42752782-42753054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):54, 160

               
               
               Conread position:7-296
               
               
               Cow position:chr16:53089411-53089141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr16:42433183-42432997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:12-189
               
               
               Cow position:chr16:47852660-47852474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):10, 47

               
               
               Conread position:13-196
               
               
               Cow position:chr16:48086934-48086744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):39, 148

               
               
               Conread position:13-209
               
               
               Cow position:chr16:7980727-7980927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):30, 82

               
               
               Conread position:13-212
               
               
               Cow position:chr16:43105581-43105373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):15, 120

               
               
               Conread position:14-187
               
               
               Cow position:chr16:29677696-29677517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):10, 22

               
               
               Conread position:15-186
               
               
               Cow position:chr16:8441868-8441692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:15-201
               
               
               Cow position:chr16:30305877-30305683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 103

               
               
               Conread position:15-201
               
               
               Cow position:chr16:31561689-31561886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:15-204
               
               
               Cow position:chr16:29159067-29159254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):78, 22

               
               
               Conread position:15-207
               
               
               Cow position:chr16:8065949-8065751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):48, 28

               
               
               Conread position:15-207
               
               
               Cow position:chr16:39683164-39682965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:15-304
               
               
               Cow position:chr16:496438-496136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):25, 51

               
               
               Conread position:15-304
               
               
               Cow position:chr16:11102885-11102588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:223
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):40, 23

               
               
               Conread position:17-207
               
               
               Cow position:chr16:12522994-12523193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):10, 22

               
               
               Conread position:17-209
               
               
               Cow position:chr16:42444097-42444294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):42, 26

               
               
               Conread position:17-246
               
               
               Cow position:chr16:39646484-39646720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 136

               
               
               Conread position:17-300
               
               
               Cow position:chr16:38389921-38390206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 206

               
               
               Conread position:19-198
               
               
               Cow position:chr16:22772919-22773106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):30, 170

               
               
               Conread position:19-207
               
               
               Cow position:chr16:55683243-55683434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):45, 180

               
               
               Conread position:19-214
               
               
               Cow position:chr16:17745775-17745980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-176
               
               
               Cow position:chr16:53627485-53627322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):44, 23

               
               
               Conread position:20-185
               
               
               Cow position:chr16:8315248-8315079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):28, 145

               
               
               Conread position:20-189
               
               
               Cow position:chr16:8025907-8025736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):74, 23

               
               
               Conread position:20-190
               
               
               Cow position:chr16:589767-589596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):37, 23

               
               
               Conread position:20-190
               
               
               Cow position:chr16:45299982-45299807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:20-196
               
               
               Cow position:chr16:15363888-15364056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:20-198
               
               
               Cow position:chr16:30037049-30036864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):27, 81

               
               
               Conread position:20-201
               
               
               Cow position:chr16:14568542-14568359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):72, 37

               
               
               Conread position:20-201
               
               
               Cow position:chr16:38243719-38243532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:20-201
               
               
               Cow position:chr16:42200841-42201033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):27, 172

               
               
               Conread position:20-201
               
               
               Cow position:chr16:49169442-49169250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:20-204
               
               
               Cow position:chr16:15370625-15370820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-204
               
               
               Cow position:chr16:29712364-29712553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:20-204
               
               
               Cow position:chr16:51043594-51043784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):26, 89

               
               
               Conread position:20-207
               
               
               Cow position:chr16:2223459-2223260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr16:33267659-33267855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:20-209
               
               
               Cow position:chr16:8206123-8205946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:20-209
               
               
               Cow position:chr16:26373006-26372810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 23

               
               
               Conread position:20-213
               
               
               Cow position:chr16:31348825-31348623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 115

               
               
               Conread position:20-224
               
               
               Cow position:chr16:18141386-18141176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):29, 156

               
               
               Conread position:20-237
               
               
               Cow position:chr16:26323574-26323348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:20-237
               
               
               Cow position:chr16:33530355-33530578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:20-237
               
               
               Cow position:chr16:46430210-46429982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):30, 99

               
               
               Conread position:20-303
               
               
               Cow position:chr16:54341930-54342204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):73, 176

               
               
               Conread position:20-304
               
               
               Cow position:chr16:47304182-47303912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):17, 39

               
               
               Conread position:20-311
               
               
               Cow position:chr16:33869818-33869543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):64, 42

               
               
               Conread position:21-207
               
               
               Cow position:chr16:20205401-20205598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:21-207
               
               
               Cow position:chr16:22850271-22850462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):28, 74

               
               
               Conread position:21-207
               
               
               Cow position:chr16:51795656-51795470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:21-209
               
               
               Cow position:chr16:9497323-9497130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):25, 177

               
               
               Conread position:21-213
               
               
               Cow position:chr16:51610892-51610693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):31, 187

               
               
               Conread position:21-214
               
               
               Cow position:chr16:17142882-17143073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):62, 36

               
               
               Conread position:21-214
               
               
               Cow position:chr16:42539646-42539445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:21-215
               
               
               Cow position:chr16:34153624-34153428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 88

               
               
               Conread position:21-233
               
               
               Cow position:chr16:23955887-23955668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):38, 22

               
               
               Conread position:22-197
               
               
               Cow position:chr16:9830391-9830571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 128

               
               
               Conread position:22-201
               
               
               Cow position:chr16:45785679-45785868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:22-223
               
               
               Cow position:chr16:52133568-52133367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):66, 35

               
               
               Conread position:23-294
               
               
               Cow position:chr16:30135948-30135685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):25, 86

               
               
               Conread position:23-309
               
               
               Cow position:chr16:9973553-9973277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):19, 183

               
               
               Conread position:24-189
               
               
               Cow position:chr16:10365865-10366043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:24-209
               
               
               Cow position:chr16:21370234-21370053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):70, 26

               
               
               Conread position:25-186
               
               
               Cow position:chr16:13483620-13483462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):68, 18

               
               
               Conread position:26-179
               
               
               Cow position:chr16:5725412-5725577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:26-207
               
               
               Cow position:chr16:16625498-16625683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):22, 141

               
               
               Conread position:27-198
               
               
               Cow position:chr16:12077529-12077359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):21, 53

               
               
               Conread position:27-234
               
               
               Cow position:chr16:13414719-13414505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):11, 174

               
               
               Conread position:28-196
               
               
               Cow position:chr16:28396133-28395957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):22, 169

               
               
               Conread position:28-212
               
               
               Cow position:chr16:15953872-15953677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 158

               
               
               Conread position:29-216
               
               
               Cow position:chr16:15726407-15726215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):28, 162

               
               
               Conread position:29-307
               
               
               Cow position:chr16:4736628-4736359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):64, 28

               
               
               Conread position:30-190
               
               
               Cow position:chr16:46452793-46452623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:30-195
               
               
               Cow position:chr16:30662317-30662145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 155

               
               
               Conread position:31-198
               
               
               Cow position:chr16:49860188-49860363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 146

               
               
               Conread position:32-184
               
               
               Cow position:chr16:8438694-8438538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):61, 25

               
               
               Conread position:32-209
               
               
               Cow position:chr16:45046794-45046976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):35, 172

               
               
               Conread position:33-188
               
               
               Cow position:chr16:15407599-15407441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:34-198
               
               
               Cow position:chr16:13712974-13712805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:35-189
               
               
               Cow position:chr16:17982177-17982024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):25, 59

               
               
               Conread position:35-201
               
               
               Cow position:chr16:45121990-45122166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:35-207
               
               
               Cow position:chr16:42633785-42633607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:35-215
               
               
               Cow position:chr16:22738243-22738417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):76, 15

               
               
               Conread position:36-197
               
               
               Cow position:chr16:53509020-53508857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):42, 14

               
               
               Conread position:36-207
               
               
               Cow position:chr16:31241328-31241158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:36-214
               
               
               Cow position:chr16:15905287-15905108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):50, 13

               
               
               Conread position:37-184
               
               
               Cow position:chr16:48493143-48493294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:37-189
               
               
               Cow position:chr16:8076539-8076383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:37-189
               
               
               Cow position:chr16:9578528-9578373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):57, 101

               
               
               Conread position:37-209
               
               
               Cow position:chr16:12010058-12010234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:38-207
               
               
               Cow position:chr16:14841325-14841498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):41, 20

               
               
               Conread position:38-237
               
               
               Cow position:chr16:55968406-55968606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):45, 106

               
               
               Conread position:39-196
               
               
               Cow position:chr16:56595422-56595264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):52, 39

               
               
               Conread position:39-309
               
               
               Cow position:chr16:17292056-17291778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):54, 23

               
               
               Conread position:40-192
               
               
               Cow position:chr16:27261980-27261828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):40, 10

               
               
               Conread position:40-193
               
               
               Cow position:chr16:18243709-18243857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):69, 22

               
               
               Conread position:40-197
               
               
               Cow position:chr16:11135014-11134857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):53, 25

               
               
               Conread position:42-188
               
               
               Cow position:chr16:30027842-30027991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 17

               
               
               Conread position:42-196
               
               
               Cow position:chr16:7812656-7812816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:43-207
               
               
               Cow position:chr16:9560529-9560358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:43-288
               
               
               Cow position:chr16:56875697-56875462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 137

               
               
               Conread position:44-204
               
               
               Cow position:chr16:12939589-12939754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):33, 18

               
               
               Conread position:44-304
               
               
               Cow position:chr16:9966712-9966440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):47, 13

               
               
               Conread position:45-204
               
               
               Cow position:chr16:15254781-15254623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):48, 20

               
               
               Conread position:45-212
               
               
               Cow position:chr16:18048184-18048012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:45-309
               
               
               Cow position:chr16:29527801-29528044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):48, 17

               
               
               Conread position:46-196
               
               
               Cow position:chr16:33645988-33646140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:46-198
               
               
               Cow position:chr16:11359123-11359278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):33, 138

               
               
               Conread position:46-198
               
               
               Cow position:chr16:17283419-17283573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 11

               
               
               Conread position:46-201
               
               
               Cow position:chr16:32893601-32893758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):56, 16

               
               
               Conread position:46-209
               
               
               Cow position:chr16:4059329-4059494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:46-209
               
               
               Cow position:chr16:15023659-15023494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):35, 150

               
               
               Conread position:46-214
               
               
               Cow position:chr16:4938062-4938237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:46-304
               
               
               Cow position:chr16:6310728-6310466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 11

               
               
               Conread position:47-198
               
               
               Cow position:chr16:9958800-9958958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:49-188
               
               
               Cow position:chr16:56265474-56265618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:50-214
               
               
               Cow position:chr16:30174552-30174386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:50-257
               
               
               Cow position:chr16:45044795-45044996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):60, 29

               
               
               Conread position:51-186
               
               
               Cow position:chr16:12324432-12324571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:51-204
               
               
               Cow position:chr16:6609527-6609371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 123

               
               
               Conread position:51-205
               
               
               Cow position:chr16:32142067-32142224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):42, 118

               
               
               Conread position:51-226
               
               
               Cow position:chr16:6379145-6378971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:51-311
               
               
               Cow position:chr16:11390880-11391158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:52-201
               
               
               Cow position:chr16:8522407-8522259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 59

               
               
               Conread position:52-294
               
               
               Cow position:chr16:8065672-8065433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):41, 146

               
               
               Conread position:53-202
               
               
               Cow position:chr16:15714089-15714241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):40, 19

               
               
               Conread position:53-204
               
               
               Cow position:chr16:30908967-30908812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):37, 12

               
               
               Conread position:54-330
               
               
               Cow position:chr16:56844166-56843878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):33, 72

               
               
               Conread position:55-202
               
               
               Cow position:chr16:258301-258154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 82

               
               
               Conread position:56-201
               
               
               Cow position:chr16:5382160-5382314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:56-201
               
               
               Cow position:chr16:50286495-50286643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:56-213
               
               
               Cow position:chr16:9280135-9279972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:56-249
               
               
               Cow position:chr16:22824852-22824658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):22, 128

               
               
               Conread position:57-184
               
               
               Cow position:chr16:13252323-13252196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):49, 45

               
               
               Conread position:57-188
               
               
               Cow position:chr16:51697066-51697203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:57-196
               
               
               Cow position:chr16:9596353-9596496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-196
               
               
               Cow position:chr16:22329144-22329287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:57-201
               
               
               Cow position:chr16:13531796-13531938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:57-201
               
               
               Cow position:chr16:44138509-44138362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-207
               
               
               Cow position:chr16:13996212-13996059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:57-208
               
               
               Cow position:chr16:12097624-12097779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:57-212
               
               
               Cow position:chr16:31575127-31575287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:57-289
               
               
               Cow position:chr16:14046540-14046325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:57-296
               
               
               Cow position:chr16:39202123-39202378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 8

               
               
               Conread position:57-311
               
               
               Cow position:chr16:48448706-48448948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 94

               
               
               Conread position:57-311
               
               
               Cow position:chr16:55592547-55592800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 61

               
               
               Conread position:57-312
               
               
               Cow position:chr16:24403445-24403200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):36, 111

               
               
               Conread position:59-207
               
               
               Cow position:chr16:50442533-50442686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:60-223
               
               
               Cow position:chr16:20265576-20265412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):12, 134

               
               
               Conread position:61-187
               
               
               Cow position:chr16:7496244-7496371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):32, 11

               
               
               Conread position:61-200
               
               
               Cow position:chr16:55945153-55945009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:61-205
               
               
               Cow position:chr16:35297393-35297536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):18, 85

               
               
               Conread position:61-207
               
               
               Cow position:chr16:33632688-33632544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):25, 94

               
               
               Conread position:61-301
               
               
               Cow position:chr16:52389607-52389828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):30, 72

               
               
               Conread position:61-318
               
               
               Cow position:chr16:1415311-1415066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):32, 40

               
               
               Conread position:62-194
               
               
               Cow position:chr16:29886195-29886057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:62-197
               
               
               Cow position:chr16:29026196-29026332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):31, 50

               
               
               Conread position:62-222
               
               
               Cow position:chr16:52364927-52365093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):31, 73

               
               
               Conread position:62-304
               
               
               Cow position:chr16:19003545-19003313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):33, 123

               
               
               Conread position:64-209
               
               
               Cow position:chr16:12220671-12220820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:64-304
               
               
               Cow position:chr16:16945308-16945056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:64-317
               
               
               Cow position:chr16:52363680-52363920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:65-195
               
               
               Cow position:chr16:9836782-9836649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:66-207
               
               
               Cow position:chr16:19282008-19282142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:66-311
               
               
               Cow position:chr16:12454796-12454564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):27, 101

               
               
               Conread position:68-189
               
               
               Cow position:chr16:23811118-23811239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):22, 37

               
               
               Conread position:68-204
               
               
               Cow position:chr16:34412803-34412942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:68-206
               
               
               Cow position:chr16:24202871-24202731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):25, 39

               
               
               Conread position:68-212
               
               
               Cow position:chr16:6232250-6232398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:71-201
               
               
               Cow position:chr16:9097024-9097154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:71-207
               
               
               Cow position:chr16:7928388-7928248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:71-226
               
               
               Cow position:chr16:51382623-51382465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 41

               
               
               Conread position:72-198
               
               
               Cow position:chr16:30211452-30211582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:74-198
               
               
               Cow position:chr16:38355427-38355299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:76-209
               
               
               Cow position:chr16:45456966-45457101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:76-214
               
               
               Cow position:chr16:21974958-21974821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:78-198
               
               
               Cow position:chr16:45193803-45193678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:78-210
               
               
               Cow position:chr16:9950930-9950799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):32, 88

               
               
               Conread position:79-196
               
               
               Cow position:chr16:28199036-28199154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:79-207
               
               
               Cow position:chr16:47662737-47662865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):14, 26

               
               
               Conread position:79-292
               
               
               Cow position:chr16:815034-815245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):8, 92

               
               
               Conread position:79-295
               
               
               Cow position:chr16:52803948-52803725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:79-309
               
               
               Cow position:chr16:3466864-3467089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):8, 77

               
               
               Conread position:80-212
               
               
               Cow position:chr16:15203363-15203227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:80-220
               
               
               Cow position:chr16:14006107-14005969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:81-207
               
               
               Cow position:chr16:21442600-21442474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):28, 8

               
               
               Conread position:81-213
               
               
               Cow position:chr16:12091654-12091518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:81-311
               
               
               Cow position:chr16:6901027-6900799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 128

               
               
               Conread position:82-196
               
               
               Cow position:chr16:43758636-43758520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:82-304
               
               
               Cow position:chr16:53614106-53614326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:176
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):5, 85

               
               
               Conread position:85-204
               
               
               Cow position:chr16:8810080-8809960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:86-194
               
               
               Cow position:chr16:4102816-4102707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-298
               
               
               Cow position:chr16:52224327-52224124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 43

               
               
               Conread position:86-307
               
               
               Cow position:chr16:52706061-52705843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 95

               
               
               Conread position:86-309
               
               
               Cow position:chr16:39416820-39416607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):24, 92

               
               
               Conread position:86-310
               
               
               Cow position:chr16:7611878-7612088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):24, 105

               
               
               Conread position:86-311
               
               
               Cow position:chr16:41037996-41038227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):24, 84

               
               
               Conread position:88-195
               
               
               Cow position:chr16:44568898-44569006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:88-201
               
               
               Cow position:chr16:33290401-33290515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:88-308
               
               
               Cow position:chr16:33752750-33752965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):22, 150

               
               
               Conread position:88-318
               
               
               Cow position:chr16:21761953-21761732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 94

               
               
               Conread position:89-213
               
               
               Cow position:chr16:27032594-27032719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:89-228
               
               
               Cow position:chr16:16280355-16280213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:89-304
               
               
               Cow position:chr16:11923010-11922805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:172
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):21, 94

               
               
               Conread position:91-204
               
               
               Cow position:chr16:50569283-50569397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:91-305
               
               
               Cow position:chr16:51130007-51130213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):20, 51

               
               
               Conread position:92-211
               
               
               Cow position:chr16:25419233-25419112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:92-239
               
               
               Cow position:chr16:26069773-26069919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):130, 12

               
               
               Conread position:94-304
               
               
               Cow position:chr16:51915593-51915790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):16, 76

               
               
               Conread position:95-311
               
               
               Cow position:chr16:3122783-3122994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 37

               
               
               Conread position:97-202
               
               
               Cow position:chr16:30646538-30646642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):13, 95

               
               
               Conread position:104-307
               
               
               Cow position:chr16:30717035-30717239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):85, 124

               
               
               Conread position:109-214
               
               
               Cow position:chr16:23187583-23187688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):89, 71

               
               
               Conread position:111-304
               
               
               Cow position:chr16:51053136-51052947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):157, 14

               
               
               Conread position:115-310
               
               
               Cow position:chr16:48099505-48099706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):94, 153

               
               
               Conread position:119-309
               
               
               Cow position:chr16:13725897-13726075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:119-319
               
               
               Cow position:chr16:7155612-7155415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):176, 72

               
               
               Conread position:121-310
               
               
               Cow position:chr16:7601048-7601230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):41, 152

               
               
               Conread position:121-311
               
               
               Cow position:chr16:10757010-10757198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):121, 96

               
               
               Conread position:207-311
               
               
               Cow position:chr16:12091550-12091445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:1-162
               
               
               Cow position:chr17:31231150-31230991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):51, 110

               
               
               Conread position:1-171
               
               
               Cow position:chr17:14848581-14848405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):20, 137

               
               
               Conread position:1-184
               
               
               Cow position:chr17:4121766-4121576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:1-189
               
               
               Cow position:chr17:29356272-29356081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):21, 43

               
               
               Conread position:1-189
               
               
               Cow position:chr17:34079145-34078952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:1-189
               
               
               Cow position:chr17:39857350-39857544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):20, 160

               
               
               Conread position:1-194
               
               
               Cow position:chr17:39606392-39606594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1-195
               
               
               Cow position:chr17:5423108-5422904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:1-195
               
               
               Cow position:chr17:30718456-30718255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):50, 188

               
               
               Conread position:1-196
               
               
               Cow position:chr17:5350162-5349958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:1-196
               
               
               Cow position:chr17:17180006-17180209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):47, 88

               
               
               Conread position:1-196
               
               
               Cow position:chr17:21039526-21039723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:1-198
               
               
               Cow position:chr17:3467723-3467920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:1-198
               
               
               Cow position:chr17:43717358-43717168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):18, 46

               
               
               Conread position:1-200
               
               
               Cow position:chr17:33793127-33793333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:1-200
               
               
               Cow position:chr17:36864587-36864800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 191

               
               
               Conread position:1-201
               
               
               Cow position:chr17:11832156-11831944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:1-201
               
               
               Cow position:chr17:40673344-40673541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):78, 30

               
               
               Conread position:1-204
               
               
               Cow position:chr17:11101838-11101641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):21, 125

               
               
               Conread position:1-206
               
               
               Cow position:chr17:20800781-20800989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):62, 37

               
               
               Conread position:1-207
               
               
               Cow position:chr17:13940356-13940144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr17:15376563-15376767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):19, 106

               
               
               Conread position:1-207
               
               
               Cow position:chr17:20032947-20032734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:1-208
               
               
               Cow position:chr17:7693028-7693240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):56, 63

               
               
               Conread position:1-209
               
               
               Cow position:chr17:9853949-9854154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):21, 64

               
               
               Conread position:1-209
               
               
               Cow position:chr17:15102928-15102715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 63

               
               
               Conread position:1-209
               
               
               Cow position:chr17:24752354-24752149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):52, 113

               
               
               Conread position:1-209
               
               
               Cow position:chr17:32138463-32138246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):11, 41

               
               
               Conread position:1-214
               
               
               Cow position:chr17:26802976-26802752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):48, 18

               
               
               Conread position:1-215
               
               
               Cow position:chr17:21293084-21292863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):18, 118

               
               
               Conread position:1-218
               
               
               Cow position:chr17:20874364-20874583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):63, 18

               
               
               Conread position:1-220
               
               
               Cow position:chr17:23883300-23883078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):87, 27

               
               
               Conread position:1-222
               
               
               Cow position:chr17:22057066-22056836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:1-240
               
               
               Cow position:chr17:9565272-9565510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):45, 101

               
               
               Conread position:1-303
               
               
               Cow position:chr17:6848762-6849065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):18, 48

               
               
               Conread position:1-304
               
               
               Cow position:chr17:9487265-9487559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):92, 42

               
               
               Conread position:1-311
               
               
               Cow position:chr17:22017131-22016817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):18, 150

               
               
               Conread position:2-213
               
               
               Cow position:chr17:12929572-12929349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):57, 213

               
               
               Conread position:2-214
               
               
               Cow position:chr17:30728468-30728686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):17, 65

               
               
               Conread position:3-184
               
               
               Cow position:chr17:28468088-28468276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):16, 99

               
               
               Conread position:3-196
               
               
               Cow position:chr17:29157379-29157582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:3-198
               
               
               Cow position:chr17:40851941-40852140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):39, 56

               
               
               Conread position:3-201
               
               
               Cow position:chr17:34791102-34790893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):21, 37

               
               
               Conread position:3-220
               
               
               Cow position:chr17:18920393-18920180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 75

               
               
               Conread position:3-247
               
               
               Cow position:chr17:21922669-21922415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):19, 42

               
               
               Conread position:3-285
               
               
               Cow position:chr17:13638592-13638880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):49, 40

               
               
               Conread position:4-198
               
               
               Cow position:chr17:31856638-31856837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):47, 165

               
               
               Conread position:4-207
               
               
               Cow position:chr17:21973166-21972953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:5-138
               
               
               Cow position:chr17:18860754-18860613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-164
               
               
               Cow position:chr17:23798247-23798416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):22, 9

               
               
               Conread position:5-172
               
               
               Cow position:chr17:22245960-22246137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:5-178
               
               
               Cow position:chr17:1113859-1114036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):38, 53

               
               
               Conread position:5-182
               
               
               Cow position:chr17:38263525-38263338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr17:36275306-36275487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):82, 30

               
               
               Conread position:5-184
               
               
               Cow position:chr17:36814328-36814515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):50, 33

               
               
               Conread position:5-186
               
               
               Cow position:chr17:34595909-34596094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:5-187
               
               
               Cow position:chr17:24580328-24580139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 37

               
               
               Conread position:5-188
               
               
               Cow position:chr17:21495345-21495529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):58, 92

               
               
               Conread position:5-188
               
               
               Cow position:chr17:29961622-29961815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr17:16158459-16158648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):54, 181

               
               
               Conread position:5-189
               
               
               Cow position:chr17:25032515-25032323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr17:25189256-25189444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):38, 104

               
               
               Conread position:5-192
               
               
               Cow position:chr17:10561598-10561797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:5-195
               
               
               Cow position:chr17:923846-924036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):45, 27

               
               
               Conread position:5-195
               
               
               Cow position:chr17:1469344-1469540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):41, 113

               
               
               Conread position:5-195
               
               
               Cow position:chr17:27048126-27048320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):47, 119

               
               
               Conread position:5-196
               
               
               Cow position:chr17:908711-908906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 65

               
               
               Conread position:5-196
               
               
               Cow position:chr17:7803207-7803009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):49, 33

               
               
               Conread position:5-196
               
               
               Cow position:chr17:11618554-11618750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):54, 32

               
               
               Conread position:5-196
               
               
               Cow position:chr17:15664639-15664843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):19, 172

               
               
               Conread position:5-196
               
               
               Cow position:chr17:20157573-20157773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):33, 115

               
               
               Conread position:5-196
               
               
               Cow position:chr17:20335633-20335815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:5-197
               
               
               Cow position:chr17:9940651-9940861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):16, 12

               
               
               Conread position:5-198
               
               
               Cow position:chr17:1025852-1025657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):94, 50

               
               
               Conread position:5-198
               
               
               Cow position:chr17:5372561-5372359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr17:17193461-17193654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 39

               
               
               Conread position:5-198
               
               
               Cow position:chr17:21755461-21755268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):55, 41

               
               
               Conread position:5-198
               
               
               Cow position:chr17:25097431-25097622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):41, 74

               
               
               Conread position:5-198
               
               
               Cow position:chr17:25126320-25126517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):47, 178

               
               
               Conread position:5-200
               
               
               Cow position:chr17:20848491-20848693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):38, 11

               
               
               Conread position:5-200
               
               
               Cow position:chr17:26000085-26000286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):49, 107

               
               
               Conread position:5-200
               
               
               Cow position:chr17:27429544-27429735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):38, 87

               
               
               Conread position:5-201
               
               
               Cow position:chr17:9824637-9824839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):33, 182

               
               
               Conread position:5-201
               
               
               Cow position:chr17:15684481-15684679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):88, 52

               
               
               Conread position:5-201
               
               
               Cow position:chr17:16371224-16371428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr17:21489655-21489453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr17:24559262-24559461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:5-201
               
               
               Cow position:chr17:24821832-24822032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 58

               
               
               Conread position:5-201
               
               
               Cow position:chr17:25128380-25128182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 41

               
               
               Conread position:5-201
               
               
               Cow position:chr17:32989444-32989647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):44, 74

               
               
               Conread position:5-201
               
               
               Cow position:chr17:32993656-32993453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):44, 74

               
               
               Conread position:5-201
               
               
               Cow position:chr17:40638918-40639114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):46, 60

               
               
               Conread position:5-204
               
               
               Cow position:chr17:6329082-6329289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:5-204
               
               
               Cow position:chr17:18720481-18720273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:5-204
               
               
               Cow position:chr17:26789388-26789593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):41, 78

               
               
               Conread position:5-204
               
               
               Cow position:chr17:29472434-29472640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:5-205
               
               
               Cow position:chr17:2275443-2275644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):15, 41

               
               
               Conread position:5-206
               
               
               Cow position:chr17:11839684-11839896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:5-207
               
               
               Cow position:chr17:9770479-9770679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):48, 91

               
               
               Conread position:5-207
               
               
               Cow position:chr17:20932298-20932507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):58, 199

               
               
               Conread position:5-207
               
               
               Cow position:chr17:30665240-30665446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):41, 167

               
               
               Conread position:5-207
               
               
               Cow position:chr17:32333124-32332915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 183

               
               
               Conread position:5-207
               
               
               Cow position:chr17:34948607-34948811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):46, 62

               
               
               Conread position:5-208
               
               
               Cow position:chr17:22127889-22128100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:5-209
               
               
               Cow position:chr17:20993071-20992864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:5-209
               
               
               Cow position:chr17:32027487-32027273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:5-209
               
               
               Cow position:chr17:40771805-40772012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):46, 60

               
               
               Conread position:5-212
               
               
               Cow position:chr17:27203075-27202866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:171
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):47, 38

               
               
               Conread position:5-213
               
               
               Cow position:chr17:26230919-26231137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):16, 9

               
               
               Conread position:5-213
               
               
               Cow position:chr17:31481067-31480860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):82, 21

               
               
               Conread position:5-214
               
               
               Cow position:chr17:6936707-6936499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):41, 21

               
               
               Conread position:5-215
               
               
               Cow position:chr17:10432008-10431790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:5-217
               
               
               Cow position:chr17:12880563-12880780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):44, 30

               
               
               Conread position:5-219
               
               
               Cow position:chr17:40331735-40331953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):11, 22

               
               
               Conread position:5-220
               
               
               Cow position:chr17:9746483-9746701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):52, 110

               
               
               Conread position:5-221
               
               
               Cow position:chr17:7590491-7590276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):88, 61

               
               
               Conread position:5-222
               
               
               Cow position:chr17:17410259-17410485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr17:32273718-32273493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:5-226
               
               
               Cow position:chr17:21680733-21680975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):38, 127

               
               
               Conread position:5-229
               
               
               Cow position:chr17:21335726-21335494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):44, 30

               
               
               Conread position:5-251
               
               
               Cow position:chr17:11215263-11215016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):41, 181

               
               
               Conread position:5-291
               
               
               Cow position:chr17:5250601-5250332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):104, 38

               
               
               Conread position:5-300
               
               
               Cow position:chr17:40289027-40288739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 21

               
               
               Conread position:5-304
               
               
               Cow position:chr17:1410271-1409951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):48, 33

               
               
               Conread position:5-304
               
               
               Cow position:chr17:15340785-15340485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):33, 183

               
               
               Conread position:5-309
               
               
               Cow position:chr17:9117615-9117926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 177

               
               
               Conread position:5-311
               
               
               Cow position:chr17:21959718-21959417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:6-183
               
               
               Cow position:chr17:10458968-10458779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:6-189
               
               
               Cow position:chr17:28982148-28982333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):53, 123

               
               
               Conread position:6-189
               
               
               Cow position:chr17:33275781-33275591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:6-208
               
               
               Cow position:chr17:21325302-21325510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 21

               
               
               Conread position:6-210
               
               
               Cow position:chr17:32419144-32418934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):32, 10

               
               
               Conread position:6-310
               
               
               Cow position:chr17:20884492-20884803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):57, 37

               
               
               Conread position:7-189
               
               
               Cow position:chr17:979185-979010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:7-198
               
               
               Cow position:chr17:9911725-9911927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):15, 113

               
               
               Conread position:7-201
               
               
               Cow position:chr17:40741619-40741823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):41, 161

               
               
               Conread position:7-205
               
               
               Cow position:chr17:5011819-5012013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):73, 36

               
               
               Conread position:7-206
               
               
               Cow position:chr17:11215921-11215718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):43, 92

               
               
               Conread position:7-208
               
               
               Cow position:chr17:25916867-25917071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):20, 33

               
               
               Conread position:7-215
               
               
               Cow position:chr17:21738905-21738689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:7-216
               
               
               Cow position:chr17:37816220-37816009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):43, 31

               
               
               Conread position:7-304
               
               
               Cow position:chr17:8079287-8079585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:221
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):86, 35

               
               
               Conread position:7-304
               
               
               Cow position:chr17:28814529-28814229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 193

               
               
               Conread position:11-217
               
               
               Cow position:chr17:25466963-25467168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):21, 82

               
               
               Conread position:12-207
               
               
               Cow position:chr17:7571075-7571280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:12-214
               
               
               Cow position:chr17:18767020-18766809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 52

               
               
               Conread position:13-186
               
               
               Cow position:chr17:22189415-22189590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 13

               
               
               Conread position:13-196
               
               
               Cow position:chr17:40312681-40312872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):8, 124

               
               
               Conread position:13-198
               
               
               Cow position:chr17:32349045-32349236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):36, 102

               
               
               Conread position:13-204
               
               
               Cow position:chr17:24773673-24773853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):10, 26

               
               
               Conread position:14-198
               
               
               Cow position:chr17:12959080-12959274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:15-201
               
               
               Cow position:chr17:27303980-27303798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):78, 28

               
               
               Conread position:15-205
               
               
               Cow position:chr17:18201734-18201933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:15-222
               
               
               Cow position:chr17:7698028-7698235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):13, 99

               
               
               Conread position:15-304
               
               
               Cow position:chr17:21758160-21757879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):32, 48

               
               
               Conread position:16-187
               
               
               Cow position:chr17:41029933-41030094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):5, 47

               
               
               Conread position:17-189
               
               
               Cow position:chr17:949954-950131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):47, 80

               
               
               Conread position:17-200
               
               
               Cow position:chr17:14003798-14003995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:17-207
               
               
               Cow position:chr17:1493170-1492972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:17-304
               
               
               Cow position:chr17:26806879-26807161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):20, 43

               
               
               Conread position:17-308
               
               
               Cow position:chr17:25718086-25718388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:19-197
               
               
               Cow position:chr17:7142845-7143027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):33, 151

               
               
               Conread position:20-153
               
               
               Cow position:chr17:32265503-32265367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):32, 17

               
               
               Conread position:20-163
               
               
               Cow position:chr17:7851070-7851220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:20-163
               
               
               Cow position:chr17:36093986-36094136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:20-189
               
               
               Cow position:chr17:34836153-34836330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:20-192
               
               
               Cow position:chr17:16616800-16616976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):67, 141

               
               
               Conread position:20-192
               
               
               Cow position:chr17:25502093-25502272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-195
               
               
               Cow position:chr17:26730626-26730448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:20-196
               
               
               Cow position:chr17:25584222-25584407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-198
               
               
               Cow position:chr17:24883584-24883403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):68, 42

               
               
               Conread position:20-201
               
               
               Cow position:chr17:14033657-14033471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):31, 18

               
               
               Conread position:20-201
               
               
               Cow position:chr17:25594713-25594520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):32, 18

               
               
               Conread position:20-204
               
               
               Cow position:chr17:18818551-18818740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):22, 165

               
               
               Conread position:20-204
               
               
               Cow position:chr17:30359456-30359631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:20-204
               
               
               Cow position:chr17:30529558-30529373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):32, 17

               
               
               Conread position:20-206
               
               
               Cow position:chr17:1035614-1035421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:20-207
               
               
               Cow position:chr17:2810609-2810809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr17:14025929-14025733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr17:21806468-21806275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr17:25342756-25342566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):26, 165

               
               
               Conread position:20-207
               
               
               Cow position:chr17:27795630-27795829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 143

               
               
               Conread position:20-207
               
               
               Cow position:chr17:29080526-29080715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):22, 126

               
               
               Conread position:20-207
               
               
               Cow position:chr17:35149545-35149353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:20-209
               
               
               Cow position:chr17:21743921-21744111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):68, 17

               
               
               Conread position:20-209
               
               
               Cow position:chr17:40384221-40384033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):44, 72

               
               
               Conread position:20-214
               
               
               Cow position:chr17:27058572-27058374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):26, 165

               
               
               Conread position:20-216
               
               
               Cow position:chr17:22564165-22564366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):28, 118

               
               
               Conread position:20-223
               
               
               Cow position:chr17:34751422-34751215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:20-291
               
               
               Cow position:chr17:17060697-17060422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):26, 54

               
               
               Conread position:20-304
               
               
               Cow position:chr17:15299891-15299611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):18, 75

               
               
               Conread position:20-309
               
               
               Cow position:chr17:21604397-21604700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):23, 209

               
               
               Conread position:20-311
               
               
               Cow position:chr17:2662408-2662724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:20-312
               
               
               Cow position:chr17:39715141-39715434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 129

               
               
               Conread position:21-198
               
               
               Cow position:chr17:12289433-12289239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):25, 191

               
               
               Conread position:21-198
               
               
               Cow position:chr17:25875382-25875562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):38, 16

               
               
               Conread position:21-201
               
               
               Cow position:chr17:24077388-24077570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):25, 98

               
               
               Conread position:21-207
               
               
               Cow position:chr17:14050219-14050031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:21-311
               
               
               Cow position:chr17:5013093-5012795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):27, 56

               
               
               Conread position:22-184
               
               
               Cow position:chr17:29026058-29026226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):31, 16

               
               
               Conread position:22-198
               
               
               Cow position:chr17:8815175-8815360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:22-209
               
               
               Cow position:chr17:11664603-11664403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:23-196
               
               
               Cow position:chr17:5288155-5288331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):60, 133

               
               
               Conread position:23-207
               
               
               Cow position:chr17:32278919-32278730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 15

               
               
               Conread position:23-207
               
               
               Cow position:chr17:32280653-32280842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 15

               
               
               Conread position:23-218
               
               
               Cow position:chr17:8823295-8823500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:24-198
               
               
               Cow position:chr17:26448532-26448712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:24-319
               
               
               Cow position:chr17:3067869-3067580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):69, 183

               
               
               Conread position:25-222
               
               
               Cow position:chr17:38833031-38833233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):27, 71

               
               
               Conread position:35-186
               
               
               Cow position:chr17:4817530-4817683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):44, 18

               
               
               Conread position:35-304
               
               
               Cow position:chr17:31585411-31585679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):17, 151

               
               
               Conread position:35-311
               
               
               Cow position:chr17:21788657-21788397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):58, 22

               
               
               Conread position:36-188
               
               
               Cow position:chr17:1562782-1562629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):14, 61

               
               
               Conread position:36-195
               
               
               Cow position:chr17:36330954-36330794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):57, 21

               
               
               Conread position:36-234
               
               
               Cow position:chr17:32554041-32553856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):74, 13

               
               
               Conread position:37-207
               
               
               Cow position:chr17:15354931-15355108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:37-208
               
               
               Cow position:chr17:24163044-24163214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):56, 25

               
               
               Conread position:38-185
               
               
               Cow position:chr17:45135900-45135753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:38-186
               
               
               Cow position:chr17:32143092-32143242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:38-188
               
               
               Cow position:chr17:43141708-43141551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:38-190
               
               
               Cow position:chr17:35334098-35334255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:38-197
               
               
               Cow position:chr17:12946344-12946185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 19

               
               
               Conread position:38-201
               
               
               Cow position:chr17:25473275-25473109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):55, 26

               
               
               Conread position:38-201
               
               
               Cow position:chr17:27440181-27440345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):55, 19

               
               
               Conread position:39-207
               
               
               Cow position:chr17:17222341-17222518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:39-230
               
               
               Cow position:chr17:1350456-1350650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):52, 18

               
               
               Conread position:39-308
               
               
               Cow position:chr17:27640043-27639784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):51, 126

               
               
               Conread position:40-207
               
               
               Cow position:chr17:1463324-1463154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):51, 24

               
               
               Conread position:41-195
               
               
               Cow position:chr17:17044325-17044168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):52, 128

               
               
               Conread position:43-204
               
               
               Cow position:chr17:12342471-12342304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):42, 14

               
               
               Conread position:44-187
               
               
               Cow position:chr17:25930529-25930383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):49, 112

               
               
               Conread position:44-190
               
               
               Cow position:chr17:4833518-4833369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):46, 135

               
               
               Conread position:45-196
               
               
               Cow position:chr17:9509983-9509830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:45-196
               
               
               Cow position:chr17:24862470-24862624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):48, 12

               
               
               Conread position:45-208
               
               
               Cow position:chr17:26072749-26072583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):48, 12

               
               
               Conread position:46-189
               
               
               Cow position:chr17:29245455-29245602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:46-204
               
               
               Cow position:chr17:17034962-17035125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:46-207
               
               
               Cow position:chr17:40355270-40355435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:46-209
               
               
               Cow position:chr17:7810742-7810575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):44, 16

               
               
               Conread position:46-219
               
               
               Cow position:chr17:5900380-5900556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):9, 149

               
               
               Conread position:47-304
               
               
               Cow position:chr17:24554010-24554262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):46, 15

               
               
               Conread position:50-179
               
               
               Cow position:chr17:12288811-12288943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 128

               
               
               Conread position:50-212
               
               
               Cow position:chr17:11224117-11224281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):9, 64

               
               
               Conread position:51-187
               
               
               Cow position:chr17:6004820-6004955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 35

               
               
               Conread position:51-206
               
               
               Cow position:chr17:43957677-43957836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:54-213
               
               
               Cow position:chr17:11281075-11280917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):39, 11

               
               
               Conread position:57-188
               
               
               Cow position:chr17:8108331-8108200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):49, 36

               
               
               Conread position:57-188
               
               
               Cow position:chr17:41666164-41666299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:57-189
               
               
               Cow position:chr17:31990956-31991091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:57-200
               
               
               Cow position:chr17:20905076-20904930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):31, 98

               
               
               Conread position:57-209
               
               
               Cow position:chr17:18674006-18673863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:57-284
               
               
               Cow position:chr17:37430482-37430261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:182
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):33, 138

               
               
               Conread position:57-299
               
               
               Cow position:chr17:5719894-5720133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):30, 102

               
               
               Conread position:57-310
               
               
               Cow position:chr17:25193504-25193250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 139

               
               
               Conread position:59-207
               
               
               Cow position:chr17:13414343-13414191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:61-192
               
               
               Cow position:chr17:5039020-5038888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):49, 33

               
               
               Conread position:61-201
               
               
               Cow position:chr17:27292430-27292286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:61-301
               
               
               Cow position:chr17:5743264-5743019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):32, 215

               
               
               Conread position:61-308
               
               
               Cow position:chr17:22074471-22074234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):32, 124

               
               
               Conread position:62-188
               
               
               Cow position:chr17:11478797-11478928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:62-201
               
               
               Cow position:chr17:1634464-1634321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:62-312
               
               
               Cow position:chr17:27613254-27613480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:63-201
               
               
               Cow position:chr17:20929270-20929412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:63-308
               
               
               Cow position:chr17:15702385-15702622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:190
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):30, 60

               
               
               Conread position:63-311
               
               
               Cow position:chr17:9713313-9713074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):30, 132

               
               
               Conread position:64-201
               
               
               Cow position:chr17:5898502-5898356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:65-207
               
               
               Cow position:chr17:21236557-21236699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):45, 29

               
               
               Conread position:65-308
               
               
               Cow position:chr17:42697325-42697571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:66-223
               
               
               Cow position:chr17:10508402-10508244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):27, 118

               
               
               Conread position:66-258
               
               
               Cow position:chr17:21655477-21655674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:66-290
               
               
               Cow position:chr17:3291104-3291316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 63

               
               
               Conread position:67-201
               
               
               Cow position:chr17:3375601-3375736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):20, 8

               
               
               Conread position:68-228
               
               
               Cow position:chr17:1876009-1875846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:69-186
               
               
               Cow position:chr17:7675120-7675000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):10, 115

               
               
               Conread position:71-206
               
               
               Cow position:chr17:10802918-10803054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 40

               
               
               Conread position:72-179
               
               
               Cow position:chr17:25139301-25139412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:72-296
               
               
               Cow position:chr17:35542132-35541917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):15, 123

               
               
               Conread position:73-295
               
               
               Cow position:chr17:21359064-21359276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):19, 65

               
               
               Conread position:74-199
               
               
               Cow position:chr17:20234251-20234380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:74-308
               
               
               Cow position:chr17:19898932-19899176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):13, 111

               
               
               Conread position:75-307
               
               
               Cow position:chr17:28888537-28888320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 119

               
               
               Conread position:76-198
               
               
               Cow position:chr17:18776141-18776018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):34, 13

               
               
               Conread position:78-215
               
               
               Cow position:chr17:3387766-3387899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:79-196
               
               
               Cow position:chr17:25349778-25349658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:79-196
               
               
               Cow position:chr17:42346972-42346853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-209
               
               
               Cow position:chr17:5344662-5344796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:79-237
               
               
               Cow position:chr17:25159797-25159641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):8, 30

               
               
               Conread position:79-244
               
               
               Cow position:chr17:11985833-11985662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):14, 118

               
               
               Conread position:79-263
               
               
               Cow position:chr17:15301275-15301090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):8, 180

               
               
               Conread position:80-293
               
               
               Cow position:chr17:968930-969139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):13, 44

               
               
               Conread position:82-198
               
               
               Cow position:chr17:26225077-26225195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:82-207
               
               
               Cow position:chr17:6786986-6787114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:82-311
               
               
               Cow position:chr17:20306376-20306605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):5, 39

               
               
               Conread position:83-266
               
               
               Cow position:chr17:15216035-15215859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 104

               
               
               Conread position:86-198
               
               
               Cow position:chr17:6318048-6317934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-207
               
               
               Cow position:chr17:11921110-11920988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-208
               
               
               Cow position:chr17:9078166-9078044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 92

               
               
               Conread position:86-208
               
               
               Cow position:chr17:25122189-25122070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):24, 95

               
               
               Conread position:86-212
               
               
               Cow position:chr17:22139635-22139762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:86-298
               
               
               Cow position:chr17:25141600-25141812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):30, 89

               
               
               Conread position:86-304
               
               
               Cow position:chr17:20856486-20856277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):24, 83

               
               
               Conread position:86-304
               
               
               Cow position:chr17:39768100-39768319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:88-288
               
               
               Cow position:chr17:21335505-21335327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:88-308
               
               
               Cow position:chr17:42744513-42744737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):17, 107

               
               
               Conread position:89-194
               
               
               Cow position:chr17:1356104-1356206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:89-511
               
               
               Cow position:chr17:21298501-21298908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 122

               
               
               Conread position:90-312
               
               
               Cow position:chr17:27464424-27464652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):22, 159

               
               
               Conread position:92-196
               
               
               Cow position:chr17:10650174-10650278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):18, 89

               
               
               Conread position:93-188
               
               
               Cow position:chr17:26183406-26183502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:94-190
               
               
               Cow position:chr17:21363444-21363541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:97-310
               
               
               Cow position:chr17:12088370-12088584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 40

               
               
               Conread position:104-319
               
               
               Cow position:chr17:10510398-10510182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):85, 200

               
               
               Conread position:109-304
               
               
               Cow position:chr17:5686036-5685857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):16, 72

               
               
               Conread position:110-310
               
               
               Cow position:chr17:21206423-21206221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:122-312
               
               
               Cow position:chr17:7859525-7859715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):89, 47

               
               
               Conread position:186-310
               
               
               Cow position:chr17:4814010-4813884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:188-308
               
               
               Cow position:chr17:23736850-23736969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:192-311
               
               
               Cow position:chr17:24766796-24766676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:1-165
               
               
               Cow position:chr18:49659990-49659822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):51, 113

               
               
               Conread position:1-167
               
               
               Cow position:chr18:31125332-31125165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):21, 43

               
               
               Conread position:1-170
               
               
               Cow position:chr18:23476799-23476621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr18:7952533-7952720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:1-188
               
               
               Cow position:chr18:56183830-56184019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):69, 44

               
               
               Conread position:1-189
               
               
               Cow position:chr18:2864112-2863905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-189
               
               
               Cow position:chr18:21192524-21192329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):41, 157

               
               
               Conread position:1-189
               
               
               Cow position:chr18:30586332-30586140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):55, 108

               
               
               Conread position:1-197
               
               
               Cow position:chr18:3180303-3180504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):20, 51

               
               
               Conread position:1-200
               
               
               Cow position:chr18:23630717-23630512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):40, 117

               
               
               Conread position:1-201
               
               
               Cow position:chr18:11867223-11867436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):18, 53

               
               
               Conread position:1-201
               
               
               Cow position:chr18:55498954-55499168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):18, 151

               
               
               Conread position:1-204
               
               
               Cow position:chr18:1571348-1571137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:1-207
               
               
               Cow position:chr18:6005612-6005397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):54, 37

               
               
               Conread position:1-214
               
               
               Cow position:chr18:33883673-33883890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):19, 108

               
               
               Conread position:1-215
               
               
               Cow position:chr18:4490013-4489795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):47, 30

               
               
               Conread position:1-217
               
               
               Cow position:chr18:10656328-10656553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):45, 8

               
               
               Conread position:1-221
               
               
               Cow position:chr18:11322486-11322709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):42, 197

               
               
               Conread position:1-223
               
               
               Cow position:chr18:39434713-39434946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):27, 153

               
               
               Conread position:1-223
               
               
               Cow position:chr18:43020509-43020279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):26, 44

               
               
               Conread position:1-223
               
               
               Cow position:chr18:51392754-51392524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 112

               
               
               Conread position:1-245
               
               
               Cow position:chr18:30794317-30794566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 26

               
               
               Conread position:1-291
               
               
               Cow position:chr18:23821929-23821645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):92, 13

               
               
               Conread position:3-189
               
               
               Cow position:chr18:5711757-5711568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):45, 79

               
               
               Conread position:3-201
               
               
               Cow position:chr18:31672625-31672414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 75

               
               
               Conread position:3-204
               
               
               Cow position:chr18:1144294-1144086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):18, 158

               
               
               Conread position:3-217
               
               
               Cow position:chr18:55692704-55692927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):19, 6

               
               
               Conread position:3-319
               
               
               Cow position:chr18:21266396-21266723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):52, 298

               
               
               Conread position:4-217
               
               
               Cow position:chr18:4673199-4673417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):42, 106

               
               
               Conread position:4-247
               
               
               Cow position:chr18:35367293-35367056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):148, 41

               
               
               Conread position:5-149
               
               
               Cow position:chr18:23623738-23623588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-164
               
               
               Cow position:chr18:13359959-13360114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):109, 38

               
               
               Conread position:5-171
               
               
               Cow position:chr18:4182294-4182121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):45, 18

               
               
               Conread position:5-172
               
               
               Cow position:chr18:56165878-56166049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-179
               
               
               Cow position:chr18:18369468-18369287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):41, 170

               
               
               Conread position:5-183
               
               
               Cow position:chr18:19849861-19849681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):45, 94

               
               
               Conread position:5-183
               
               
               Cow position:chr18:53642858-53642671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 132

               
               
               Conread position:5-183
               
               
               Cow position:chr18:56044451-56044632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):54, 92

               
               
               Conread position:5-184
               
               
               Cow position:chr18:4264496-4264313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):88, 100

               
               
               Conread position:5-184
               
               
               Cow position:chr18:29796530-29796348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):86, 48

               
               
               Conread position:5-186
               
               
               Cow position:chr18:11377259-11377446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):58, 126

               
               
               Conread position:5-188
               
               
               Cow position:chr18:23169470-23169662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:5-188
               
               
               Cow position:chr18:36746360-36746175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):53, 30

               
               
               Conread position:5-188
               
               
               Cow position:chr18:50082357-50082173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:5-189
               
               
               Cow position:chr18:10322701-10322892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):44, 23

               
               
               Conread position:5-189
               
               
               Cow position:chr18:45104550-45104353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr18:48713444-48713636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr18:51850663-51850479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):63, 107

               
               
               Conread position:5-189
               
               
               Cow position:chr18:56181569-56181371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 156

               
               
               Conread position:5-192
               
               
               Cow position:chr18:11684875-11685070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):50, 33

               
               
               Conread position:5-194
               
               
               Cow position:chr18:18919062-18918870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):50, 38

               
               
               Conread position:5-195
               
               
               Cow position:chr18:14586570-14586379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:5-196
               
               
               Cow position:chr18:7109023-7109220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):53, 172

               
               
               Conread position:5-196
               
               
               Cow position:chr18:12584949-12584747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-196
               
               
               Cow position:chr18:25282658-25282463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):42, 177

               
               
               Conread position:5-197
               
               
               Cow position:chr18:20641594-20641403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):97, 33

               
               
               Conread position:5-197
               
               
               Cow position:chr18:30341279-30341090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):105, 45

               
               
               Conread position:5-198
               
               
               Cow position:chr18:16997147-16997348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr18:19193471-19193271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):58, 38

               
               
               Conread position:5-198
               
               
               Cow position:chr18:19883424-19883627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr18:20174234-20174037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):53, 174

               
               
               Conread position:5-198
               
               
               Cow position:chr18:56159356-56159555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):47, 41

               
               
               Conread position:5-200
               
               
               Cow position:chr18:36264871-36264677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):105, 81

               
               
               Conread position:5-200
               
               
               Cow position:chr18:48242084-48242288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):48, 38

               
               
               Conread position:5-200
               
               
               Cow position:chr18:51656149-51655945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr18:10214301-10214093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr18:18592370-18592570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr18:29371763-29371964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr18:37382198-37381991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):41, 106

               
               
               Conread position:5-201
               
               
               Cow position:chr18:43555630-43555429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):54, 182

               
               
               Conread position:5-202
               
               
               Cow position:chr18:4204026-4203832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):86, 37

               
               
               Conread position:5-202
               
               
               Cow position:chr18:51756991-51757193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):43, 19

               
               
               Conread position:5-203
               
               
               Cow position:chr18:727927-728124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 93

               
               
               Conread position:5-204
               
               
               Cow position:chr18:12273552-12273758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:5-204
               
               
               Cow position:chr18:46647254-46647060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:5-205
               
               
               Cow position:chr18:33158848-33159043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):84, 33

               
               
               Conread position:5-206
               
               
               Cow position:chr18:29474635-29474845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):46, 144

               
               
               Conread position:5-207
               
               
               Cow position:chr18:2774241-2774036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):86, 163

               
               
               Conread position:5-207
               
               
               Cow position:chr18:7965124-7965332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 143

               
               
               Conread position:5-207
               
               
               Cow position:chr18:29080714-29080910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):88, 32

               
               
               Conread position:5-207
               
               
               Cow position:chr18:52478044-52478253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):50, 144

               
               
               Conread position:5-209
               
               
               Cow position:chr18:24266515-24266303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):44, 30

               
               
               Conread position:5-209
               
               
               Cow position:chr18:42747487-42747692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):48, 102

               
               
               Conread position:5-209
               
               
               Cow position:chr18:50382150-50382349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):100, 72

               
               
               Conread position:5-213
               
               
               Cow position:chr18:49841173-49841384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):33, 98

               
               
               Conread position:5-214
               
               
               Cow position:chr18:50974399-50974184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):58, 18

               
               
               Conread position:5-217
               
               
               Cow position:chr18:6609963-6609738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:5-218
               
               
               Cow position:chr18:33299796-33300018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 48

               
               
               Conread position:5-229
               
               
               Cow position:chr18:33157711-33157937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):53, 111

               
               
               Conread position:5-231
               
               
               Cow position:chr18:19273207-19272969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-239
               
               
               Cow position:chr18:1732967-1732738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):88, 37

               
               
               Conread position:5-241
               
               
               Cow position:chr18:7359640-7359887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):43, 9

               
               
               Conread position:5-301
               
               
               Cow position:chr18:36458828-36459115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:5-303
               
               
               Cow position:chr18:40759101-40759386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):54, 152

               
               
               Conread position:5-304
               
               
               Cow position:chr18:23162787-23163060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):41, 92

               
               
               Conread position:5-308
               
               
               Cow position:chr18:39875364-39875075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):50, 143

               
               
               Conread position:5-309
               
               
               Cow position:chr18:47967029-47966715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 91

               
               
               Conread position:5-310
               
               
               Cow position:chr18:36230830-36230534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 111

               
               
               Conread position:5-311
               
               
               Cow position:chr18:27109400-27109081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 286

               
               
               Conread position:5-311
               
               
               Cow position:chr18:35537339-35536994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):43, 194

               
               
               Conread position:5-311
               
               
               Cow position:chr18:51178822-51178540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):88, 36

               
               
               Conread position:5-318
               
               
               Cow position:chr18:25647357-25647035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):36, 113

               
               
               Conread position:5-329
               
               
               Cow position:chr18:3158707-3158393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):50, 197

               
               
               Conread position:6-187
               
               
               Cow position:chr18:28658013-28657828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):34, 59

               
               
               Conread position:6-195
               
               
               Cow position:chr18:1931559-1931367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):58, 20

               
               
               Conread position:6-237
               
               
               Cow position:chr18:49324528-49324299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):87, 32

               
               
               Conread position:6-258
               
               
               Cow position:chr18:4871969-4872220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):46, 100

               
               
               Conread position:7-197
               
               
               Cow position:chr18:247785-247603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:7-198
               
               
               Cow position:chr18:51691567-51691369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):45, 190

               
               
               Conread position:7-201
               
               
               Cow position:chr18:7956040-7956245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:7-247
               
               
               Cow position:chr18:22214378-22214628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 186

               
               
               Conread position:8-216
               
               
               Cow position:chr18:4556268-4556057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):37, 106

               
               
               Conread position:12-179
               
               
               Cow position:chr18:3422602-3422772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):48, 102

               
               
               Conread position:12-186
               
               
               Cow position:chr18:4757664-4757490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):18, 36

               
               
               Conread position:12-188
               
               
               Cow position:chr18:47511905-47512090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:13-184
               
               
               Cow position:chr18:47525304-47525488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:13-209
               
               
               Cow position:chr18:1954690-1954484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:13-224
               
               
               Cow position:chr18:19646077-19646294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):50, 168

               
               
               Conread position:13-267
               
               
               Cow position:chr18:39022160-39022414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):9, 32

               
               
               Conread position:13-299
               
               
               Cow position:chr18:35012415-35012115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:216
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:14-196
               
               
               Cow position:chr18:21380662-21380475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):49, 23

               
               
               Conread position:14-204
               
               
               Cow position:chr18:5632168-5632368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:14-204
               
               
               Cow position:chr18:12058907-12059097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):53, 39

               
               
               Conread position:15-208
               
               
               Cow position:chr18:53776378-53776575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):28, 158

               
               
               Conread position:15-209
               
               
               Cow position:chr18:37002538-37002739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):23, 49

               
               
               Conread position:15-210
               
               
               Cow position:chr18:51676185-51675984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):37, 8

               
               
               Conread position:15-240
               
               
               Cow position:chr18:48633692-48633909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 49

               
               
               Conread position:17-176
               
               
               Cow position:chr18:20318137-20317978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):40, 98

               
               
               Conread position:17-196
               
               
               Cow position:chr18:42290418-42290235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):46, 20

               
               
               Conread position:17-196
               
               
               Cow position:chr18:42293146-42292963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):46, 20

               
               
               Conread position:17-207
               
               
               Cow position:chr18:21782599-21782789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 77

               
               
               Conread position:17-207
               
               
               Cow position:chr18:35873984-35874181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:17-208
               
               
               Cow position:chr18:7069547-7069735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):62, 16

               
               
               Conread position:18-304
               
               
               Cow position:chr18:18699051-18699330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):75, 128

               
               
               Conread position:19-209
               
               
               Cow position:chr18:48961842-48962039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):27, 181

               
               
               Conread position:19-214
               
               
               Cow position:chr18:27078786-27078972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):74, 18

               
               
               Conread position:20-167
               
               
               Cow position:chr18:38996353-38996201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:20-183
               
               
               Cow position:chr18:47485962-47486122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):73, 23

               
               
               Conread position:20-186
               
               
               Cow position:chr18:44028158-44027990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 18

               
               
               Conread position:20-187
               
               
               Cow position:chr18:3211782-3211961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:20-187
               
               
               Cow position:chr18:38523581-38523743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):11, 45

               
               
               Conread position:20-188
               
               
               Cow position:chr18:51405996-51405827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:20-191
               
               
               Cow position:chr18:56301799-56301978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):26, 169

               
               
               Conread position:20-194
               
               
               Cow position:chr18:5078866-5078684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):28, 154

               
               
               Conread position:20-196
               
               
               Cow position:chr18:17005167-17005353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-196
               
               
               Cow position:chr18:22120971-22120792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):68, 30

               
               
               Conread position:20-196
               
               
               Cow position:chr18:24508329-24508139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-204
               
               
               Cow position:chr18:24759746-24759556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:153
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:20-204
               
               
               Cow position:chr18:51643458-51643266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):28, 153

               
               
               Conread position:20-207
               
               
               Cow position:chr18:39623710-39623904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:20-207
               
               
               Cow position:chr18:39662689-39662881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):39, 18

               
               
               Conread position:20-207
               
               
               Cow position:chr18:43283848-43283654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):37, 23

               
               
               Conread position:20-207
               
               
               Cow position:chr18:47416903-47417100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):28, 134

               
               
               Conread position:20-220
               
               
               Cow position:chr18:21102862-21102659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):35, 23

               
               
               Conread position:20-229
               
               
               Cow position:chr18:46048669-46048876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):73, 23

               
               
               Conread position:20-251
               
               
               Cow position:chr18:2619303-2619063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 23

               
               
               Conread position:20-311
               
               
               Cow position:chr18:22274926-22274634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):28, 106

               
               
               Conread position:21-195
               
               
               Cow position:chr18:52854961-52855146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:21-209
               
               
               Cow position:chr18:22055965-22055768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 169

               
               
               Conread position:21-296
               
               
               Cow position:chr18:19896544-19896266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):38, 22

               
               
               Conread position:21-304
               
               
               Cow position:chr18:4624237-4623933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):32, 22

               
               
               Conread position:22-301
               
               
               Cow position:chr18:51212754-51213017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):37, 21

               
               
               Conread position:22-307
               
               
               Cow position:chr18:9176812-9177095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):29, 88

               
               
               Conread position:23-207
               
               
               Cow position:chr18:47835740-47835927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:24-186
               
               
               Cow position:chr18:37188074-37187915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:24-204
               
               
               Cow position:chr18:44908970-44909155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):55, 38

               
               
               Conread position:24-229
               
               
               Cow position:chr18:55015286-55015499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):69, 22

               
               
               Conread position:25-317
               
               
               Cow position:chr18:5701163-5701444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 161

               
               
               Conread position:27-164
               
               
               Cow position:chr18:2098827-2098684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:27-201
               
               
               Cow position:chr18:4495969-4495789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:28-309
               
               
               Cow position:chr18:15025594-15025874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):65, 29

               
               
               Conread position:32-197
               
               
               Cow position:chr18:43014933-43014774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):47, 11

               
               
               Conread position:32-312
               
               
               Cow position:chr18:24342766-24343037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):6, 153

               
               
               Conread position:33-174
               
               
               Cow position:chr18:14888220-14888361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):60, 10

               
               
               Conread position:35-198
               
               
               Cow position:chr18:5647742-5647907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):58, 15

               
               
               Conread position:35-198
               
               
               Cow position:chr18:24719239-24719407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:35-311
               
               
               Cow position:chr18:37023622-37023364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):59, 22

               
               
               Conread position:36-176
               
               
               Cow position:chr18:380861-381004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):6, 27

               
               
               Conread position:36-196
               
               
               Cow position:chr18:3044377-3044535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):132, 58

               
               
               Conread position:37-178
               
               
               Cow position:chr18:32599982-32600126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):56, 25

               
               
               Conread position:37-201
               
               
               Cow position:chr18:52251925-52251760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):56, 9

               
               
               Conread position:37-204
               
               
               Cow position:chr18:49038392-49038562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):56, 25

               
               
               Conread position:37-339
               
               
               Cow position:chr18:35889165-35888891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):205, 20

               
               
               Conread position:38-186
               
               
               Cow position:chr18:52635140-52634989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):53, 146

               
               
               Conread position:38-207
               
               
               Cow position:chr18:7481081-7481251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):25, 12

               
               
               Conread position:38-209
               
               
               Cow position:chr18:47548056-47547882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):11, 27

               
               
               Conread position:38-214
               
               
               Cow position:chr18:16659501-16659323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):46, 15

               
               
               Conread position:39-190
               
               
               Cow position:chr18:56172082-56171928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):20, 71

               
               
               Conread position:39-307
               
               
               Cow position:chr18:35692783-35693044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):9, 139

               
               
               Conread position:40-200
               
               
               Cow position:chr18:44262563-44262726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:40-201
               
               
               Cow position:chr18:38937755-38937918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:40-205
               
               
               Cow position:chr18:14225324-14225495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:41-222
               
               
               Cow position:chr18:52245127-52245325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):48, 94

               
               
               Conread position:41-274
               
               
               Cow position:chr18:2510091-2509869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:43-204
               
               
               Cow position:chr18:42427556-42427720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):7, 14

               
               
               Conread position:43-312
               
               
               Cow position:chr18:21708192-21707929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):48, 161

               
               
               Conread position:45-196
               
               
               Cow position:chr18:22170554-22170710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:45-219
               
               
               Cow position:chr18:27388520-27388696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):10, 109

               
               
               Conread position:46-207
               
               
               Cow position:chr18:4758094-4757930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):33, 131

               
               
               Conread position:46-208
               
               
               Cow position:chr18:19868320-19868157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:46-215
               
               
               Cow position:chr18:52413904-52414080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):27, 16

               
               
               Conread position:46-219
               
               
               Cow position:chr18:6399694-6399521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):47, 59

               
               
               Conread position:46-223
               
               
               Cow position:chr18:46072402-46072582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):45, 11

               
               
               Conread position:47-201
               
               
               Cow position:chr18:23447121-23446965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):46, 19

               
               
               Conread position:49-207
               
               
               Cow position:chr18:44917699-44917858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):44, 13

               
               
               Conread position:50-207
               
               
               Cow position:chr18:11754072-11754233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:51-222
               
               
               Cow position:chr18:56191018-56190848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):42, 132

               
               
               Conread position:53-196
               
               
               Cow position:chr18:19796978-19796830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:54-184
               
               
               Cow position:chr18:47125454-47125320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:56-189
               
               
               Cow position:chr18:39168480-39168616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):32, 67

               
               
               Conread position:57-175
               
               
               Cow position:chr18:47565776-47565895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-175
               
               
               Cow position:chr18:52003481-52003601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 70

               
               
               Conread position:57-188
               
               
               Cow position:chr18:2549354-2549219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:57-196
               
               
               Cow position:chr18:40047549-40047409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 78

               
               
               Conread position:57-198
               
               
               Cow position:chr18:45558096-45558242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:57-198
               
               
               Cow position:chr18:49655634-49655780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):37, 98

               
               
               Conread position:57-198
               
               
               Cow position:chr18:51192791-51192646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-200
               
               
               Cow position:chr18:912154-912010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 48

               
               
               Conread position:57-201
               
               
               Cow position:chr18:31557211-31557063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:57-205
               
               
               Cow position:chr18:14172258-14172109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):36, 54

               
               
               Conread position:57-221
               
               
               Cow position:chr18:38757889-38757718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:57-310
               
               
               Cow position:chr18:24529920-24529664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):36, 58

               
               
               Conread position:57-311
               
               
               Cow position:chr18:51867600-51867342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):50, 169

               
               
               Conread position:58-213
               
               
               Cow position:chr18:21768569-21768722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:59-177
               
               
               Cow position:chr18:15301094-15301215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:59-207
               
               
               Cow position:chr18:10051699-10051849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):20, 46

               
               
               Conread position:61-188
               
               
               Cow position:chr18:26458396-26458264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:61-196
               
               
               Cow position:chr18:47410496-47410635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:62-187
               
               
               Cow position:chr18:11657611-11657739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):24, 62

               
               
               Conread position:62-200
               
               
               Cow position:chr18:50359286-50359428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr18:19765143-19765289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:63-201
               
               
               Cow position:chr18:19433718-19433859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):22, 105

               
               
               Conread position:63-201
               
               
               Cow position:chr18:21969848-21969707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:63-205
               
               
               Cow position:chr18:48113007-48112866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):54, 29

               
               
               Conread position:63-310
               
               
               Cow position:chr18:47963580-47963811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):30, 48

               
               
               Conread position:65-214
               
               
               Cow position:chr18:53093061-53092908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:65-311
               
               
               Cow position:chr18:20901638-20901889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):11, 129

               
               
               Conread position:66-197
               
               
               Cow position:chr18:4851521-4851390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 39

               
               
               Conread position:66-201
               
               
               Cow position:chr18:23648880-23649020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:68-201
               
               
               Cow position:chr18:35827413-35827277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:69-204
               
               
               Cow position:chr18:8975360-8975495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):42, 128

               
               
               Conread position:70-207
               
               
               Cow position:chr18:238153-238013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):18, 9

               
               
               Conread position:72-188
               
               
               Cow position:chr18:41011215-41011098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):24, 14

               
               
               Conread position:72-209
               
               
               Cow position:chr18:42720026-42719893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):21, 59

               
               
               Conread position:74-198
               
               
               Cow position:chr18:31159307-31159176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:74-292
               
               
               Cow position:chr18:56157692-56157905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):115, 36

               
               
               Conread position:75-197
               
               
               Cow position:chr18:19809715-19809589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:76-215
               
               
               Cow position:chr18:46277316-46277178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:78-198
               
               
               Cow position:chr18:53962454-53962334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):9, 44

               
               
               Conread position:79-215
               
               
               Cow position:chr18:47920720-47920855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):32, 114

               
               
               Conread position:81-176
               
               
               Cow position:chr18:28297889-28297792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:82-196
               
               
               Cow position:chr18:39460196-39460312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:82-206
               
               
               Cow position:chr18:49970677-49970551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:82-207
               
               
               Cow position:chr18:56463754-56463628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):8, 54

               
               
               Conread position:82-288
               
               
               Cow position:chr18:49982706-49982927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:85-184
               
               
               Cow position:chr18:23898398-23898498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:85-304
               
               
               Cow position:chr18:4088445-4088658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):161, 24

               
               
               Conread position:86-201
               
               
               Cow position:chr18:45185853-45185969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-204
               
               
               Cow position:chr18:24022599-24022718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:86-301
               
               
               Cow position:chr18:14090962-14091164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):19, 65

               
               
               Conread position:86-301
               
               
               Cow position:chr18:50612550-50612353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):24, 108

               
               
               Conread position:87-207
               
               
               Cow position:chr18:26586632-26586512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):33, 88

               
               
               Conread position:89-223
               
               
               Cow position:chr18:52625480-52625340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:89-309
               
               
               Cow position:chr18:11672820-11673028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 19

               
               
               Conread position:92-207
               
               
               Cow position:chr18:5189706-5189590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:92-207
               
               
               Cow position:chr18:27637479-27637595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:92-300
               
               
               Cow position:chr18:35077237-35077443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):18, 146

               
               
               Conread position:93-288
               
               
               Cow position:chr18:11262825-11263017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):20, 28

               
               
               Conread position:93-309
               
               
               Cow position:chr18:43061102-43060874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:93-311
               
               
               Cow position:chr18:33606950-33607165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):17, 98

               
               
               Conread position:94-189
               
               
               Cow position:chr18:52589978-52589883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:82
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:95-292
               
               
               Cow position:chr18:55127945-55128141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):55, 134

               
               
               Conread position:100-209
               
               
               Cow position:chr18:22045418-22045311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):11, 28

               
               
               Conread position:104-307
               
               
               Cow position:chr18:53751779-53751984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):63, 176

               
               
               Conread position:109-304
               
               
               Cow position:chr18:38438786-38438591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):130, 11

               
               
               Conread position:110-221
               
               
               Cow position:chr18:23921696-23921585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:114-253
               
               
               Cow position:chr18:21104837-21104704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:119-301
               
               
               Cow position:chr18:49543605-49543784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):123, 42

               
               
               Conread position:119-319
               
               
               Cow position:chr18:30921233-30921412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:120-310
               
               
               Cow position:chr18:8390206-8390385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):182, 71

               
               
               Conread position:121-301
               
               
               Cow position:chr18:19882160-19881994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:155-311
               
               
               Cow position:chr18:39190443-39190296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:192-304
               
               
               Cow position:chr18:40356888-40356778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:206-308
               
               
               Cow position:chr18:43020264-43020161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1-165
               
               
               Cow position:chr19:53657799-53657974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):24, 162

               
               
               Conread position:1-176
               
               
               Cow position:chr19:15863137-15862956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):14, 48

               
               
               Conread position:1-183
               
               
               Cow position:chr19:22799168-22798976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1-184
               
               
               Cow position:chr19:43418316-43418508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):24, 46

               
               
               Conread position:1-188
               
               
               Cow position:chr19:24062196-24062383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):93, 37

               
               
               Conread position:1-188
               
               
               Cow position:chr19:31846638-31846445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):58, 186

               
               
               Conread position:1-189
               
               
               Cow position:chr19:3812107-3811912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 111

               
               
               Conread position:1-190
               
               
               Cow position:chr19:36245580-36245386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-192
               
               
               Cow position:chr19:24358325-24358132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 44

               
               
               Conread position:1-195
               
               
               Cow position:chr19:1664281-1664077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:1-196
               
               
               Cow position:chr19:10242490-10242691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):17, 117

               
               
               Conread position:1-196
               
               
               Cow position:chr19:33468929-33469137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:1-198
               
               
               Cow position:chr19:15092223-15092020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 98

               
               
               Conread position:1-200
               
               
               Cow position:chr19:15068098-15067886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):18, 67

               
               
               Conread position:1-204
               
               
               Cow position:chr19:13121369-13121161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):18, 30

               
               
               Conread position:1-204
               
               
               Cow position:chr19:30471439-30471232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):57, 22

               
               
               Conread position:1-206
               
               
               Cow position:chr19:2577472-2577683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):25, 101

               
               
               Conread position:1-206
               
               
               Cow position:chr19:23403736-23403520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):19, 40

               
               
               Conread position:1-206
               
               
               Cow position:chr19:38842649-38842435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr19:14253542-14253757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr19:21816868-21817088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):18, 123

               
               
               Conread position:1-207
               
               
               Cow position:chr19:30232633-30232835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):54, 26

               
               
               Conread position:1-207
               
               
               Cow position:chr19:36722224-36722434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):54, 28

               
               
               Conread position:1-214
               
               
               Cow position:chr19:55394811-55395032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):18, 33

               
               
               Conread position:1-218
               
               
               Cow position:chr19:12747863-12747638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):54, 37

               
               
               Conread position:1-220
               
               
               Cow position:chr19:4587816-4587600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):92, 23

               
               
               Conread position:1-231
               
               
               Cow position:chr19:31690947-31691182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:1-288
               
               
               Cow position:chr19:48475048-48475336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:1-300
               
               
               Cow position:chr19:34620120-34619815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:223
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):20, 144

               
               
               Conread position:1-307
               
               
               Cow position:chr19:21335696-21335381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):21, 199

               
               
               Conread position:1-308
               
               
               Cow position:chr19:36059839-36060146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):14, 208

               
               
               Conread position:1-309
               
               
               Cow position:chr19:11424401-11424089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 37

               
               
               Conread position:1-311
               
               
               Cow position:chr19:42763111-42763407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):20, 16

               
               
               Conread position:2-189
               
               
               Cow position:chr19:4987854-4987660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:2-200
               
               
               Cow position:chr19:23784507-23784301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 69

               
               
               Conread position:2-204
               
               
               Cow position:chr19:44144015-44143814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):38, 10

               
               
               Conread position:3-189
               
               
               Cow position:chr19:25652842-25652652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):25, 105

               
               
               Conread position:3-201
               
               
               Cow position:chr19:55590142-55590351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:3-207
               
               
               Cow position:chr19:20622569-20622779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):39, 11

               
               
               Conread position:3-304
               
               
               Cow position:chr19:38637905-38637596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 26

               
               
               Conread position:4-184
               
               
               Cow position:chr19:22153936-22153747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):42, 15

               
               
               Conread position:4-196
               
               
               Cow position:chr19:9541978-9541787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:4-198
               
               
               Cow position:chr19:30910058-30910261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):49, 35

               
               
               Conread position:4-216
               
               
               Cow position:chr19:43058452-43058662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):180, 87

               
               
               Conread position:4-218
               
               
               Cow position:chr19:2224185-2223967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):45, 108

               
               
               Conread position:4-289
               
               
               Cow position:chr19:30886311-30886607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:5-147
               
               
               Cow position:chr19:34425501-34425644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):86, 105

               
               
               Conread position:5-158
               
               
               Cow position:chr19:51401096-51400938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):41, 111

               
               
               Conread position:5-174
               
               
               Cow position:chr19:31595216-31595393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:5-175
               
               
               Cow position:chr19:47859398-47859223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):50, 32

               
               
               Conread position:5-176
               
               
               Cow position:chr19:41946102-41946277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):33, 54

               
               
               Conread position:5-179
               
               
               Cow position:chr19:30551944-30552114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:5-180
               
               
               Cow position:chr19:17776098-17776278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr19:4503136-4503322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):48, 21

               
               
               Conread position:5-184
               
               
               Cow position:chr19:25807386-25807205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):44, 112

               
               
               Conread position:5-186
               
               
               Cow position:chr19:28924675-28924861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-188
               
               
               Cow position:chr19:42886869-42887055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):41, 18

               
               
               Conread position:5-188
               
               
               Cow position:chr19:47453346-47453538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr19:7884495-7884685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr19:11442899-11443098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr19:56063517-56063322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:5-194
               
               
               Cow position:chr19:5656199-5656012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:5-196
               
               
               Cow position:chr19:8375389-8375188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-196
               
               
               Cow position:chr19:8599399-8599200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 10

               
               
               Conread position:5-196
               
               
               Cow position:chr19:24453593-24453397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):50, 32

               
               
               Conread position:5-196
               
               
               Cow position:chr19:25673603-25673412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):41, 21

               
               
               Conread position:5-197
               
               
               Cow position:chr19:19919545-19919347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):50, 166

               
               
               Conread position:5-197
               
               
               Cow position:chr19:35322220-35322021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr19:20935670-20935873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):53, 38

               
               
               Conread position:5-201
               
               
               Cow position:chr19:3621347-3621548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):58, 45

               
               
               Conread position:5-201
               
               
               Cow position:chr19:25526196-25526403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr19:32457560-32457760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):41, 126

               
               
               Conread position:5-201
               
               
               Cow position:chr19:52750843-52750639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:161
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:5-202
               
               
               Cow position:chr19:11191700-11191500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):38, 103

               
               
               Conread position:5-204
               
               
               Cow position:chr19:47986772-47986982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:5-205
               
               
               Cow position:chr19:24137178-24137391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 137

               
               
               Conread position:5-206
               
               
               Cow position:chr19:6516183-6516392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 88

               
               
               Conread position:5-206
               
               
               Cow position:chr19:26087112-26087319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr19:729828-729623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):50, 93

               
               
               Conread position:5-207
               
               
               Cow position:chr19:2221162-2220950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:167
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr19:5913040-5912835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 28

               
               
               Conread position:5-207
               
               
               Cow position:chr19:15887408-15887193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr19:31652477-31652683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):58, 32

               
               
               Conread position:5-207
               
               
               Cow position:chr19:39385122-39384918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):88, 177

               
               
               Conread position:5-207
               
               
               Cow position:chr19:51621267-51621055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):43, 32

               
               
               Conread position:5-209
               
               
               Cow position:chr19:35540213-35540426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 184

               
               
               Conread position:5-209
               
               
               Cow position:chr19:39254535-39254318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:5-209
               
               
               Cow position:chr19:39361059-39361273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):48, 30

               
               
               Conread position:5-209
               
               
               Cow position:chr19:51194159-51194366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):54, 138

               
               
               Conread position:5-213
               
               
               Cow position:chr19:53542974-53542768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):41, 108

               
               
               Conread position:5-215
               
               
               Cow position:chr19:46094723-46094503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:5-218
               
               
               Cow position:chr19:22134228-22134015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:5-219
               
               
               Cow position:chr19:14347929-14348148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):42, 88

               
               
               Conread position:5-223
               
               
               Cow position:chr19:2207858-2207652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):77, 27

               
               
               Conread position:5-225
               
               
               Cow position:chr19:17273813-17273593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):171, 91

               
               
               Conread position:5-225
               
               
               Cow position:chr19:51185341-51185565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):44, 132

               
               
               Conread position:5-226
               
               
               Cow position:chr19:16694126-16693888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 208

               
               
               Conread position:5-246
               
               
               Cow position:chr19:3870520-3870771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:5-301
               
               
               Cow position:chr19:6079443-6079165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):52, 149

               
               
               Conread position:5-301
               
               
               Cow position:chr19:7404462-7404171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):43, 184

               
               
               Conread position:5-301
               
               
               Cow position:chr19:22450014-22449732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):50, 163

               
               
               Conread position:5-304
               
               
               Cow position:chr19:12036593-12036279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):48, 33

               
               
               Conread position:5-307
               
               
               Cow position:chr19:33237093-33237396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 51

               
               
               Conread position:5-308
               
               
               Cow position:chr19:13316500-13316218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):44, 187

               
               
               Conread position:5-309
               
               
               Cow position:chr19:20093069-20092769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):86, 38

               
               
               Conread position:6-193
               
               
               Cow position:chr19:6531807-6531996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 33

               
               
               Conread position:6-198
               
               
               Cow position:chr19:26976144-26975950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):87, 39

               
               
               Conread position:6-204
               
               
               Cow position:chr19:12601729-12601927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):53, 37

               
               
               Conread position:6-204
               
               
               Cow position:chr19:37467142-37466936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):52, 26

               
               
               Conread position:6-234
               
               
               Cow position:chr19:49457215-49456988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 32

               
               
               Conread position:6-308
               
               
               Cow position:chr19:20984856-20984555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):46, 32

               
               
               Conread position:7-183
               
               
               Cow position:chr19:10676940-10676760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):53, 36

               
               
               Conread position:7-187
               
               
               Cow position:chr19:40449934-40450122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 180

               
               
               Conread position:7-188
               
               
               Cow position:chr19:53371979-53371792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):51, 71

               
               
               Conread position:7-189
               
               
               Cow position:chr19:39649157-39648969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:7-189
               
               
               Cow position:chr19:41024141-41024331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:7-201
               
               
               Cow position:chr19:23394703-23394905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):44, 170

               
               
               Conread position:7-201
               
               
               Cow position:chr19:41695747-41695541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):43, 158

               
               
               Conread position:7-212
               
               
               Cow position:chr19:29627461-29627259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):72, 43

               
               
               Conread position:8-175
               
               
               Cow position:chr19:43441085-43441261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:12-213
               
               
               Cow position:chr19:21378548-21378338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:12-319
               
               
               Cow position:chr19:52711438-52711135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):12, 28

               
               
               Conread position:13-209
               
               
               Cow position:chr19:40051468-40051266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:14-185
               
               
               Cow position:chr19:51285558-51285742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):7, 170

               
               
               Conread position:14-196
               
               
               Cow position:chr19:51751246-51751051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:15-196
               
               
               Cow position:chr19:38410795-38410982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):38, 28

               
               
               Conread position:15-204
               
               
               Cow position:chr19:43413704-43413904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 177

               
               
               Conread position:17-189
               
               
               Cow position:chr19:25410915-25410740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):38, 9

               
               
               Conread position:17-198
               
               
               Cow position:chr19:42564065-42564261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:19-201
               
               
               Cow position:chr19:34758069-34757883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:19-222
               
               
               Cow position:chr19:43647343-43647556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):44, 185

               
               
               Conread position:20-138
               
               
               Cow position:chr19:47969070-47969192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):40, 19

               
               
               Conread position:20-175
               
               
               Cow position:chr19:54942904-54943062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):7, 40

               
               
               Conread position:20-188
               
               
               Cow position:chr19:10971164-10970989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:20-189
               
               
               Cow position:chr19:8128232-8128412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:20-189
               
               
               Cow position:chr19:23304559-23304383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-196
               
               
               Cow position:chr19:43291983-43292168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:20-198
               
               
               Cow position:chr19:6309986-6309801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):44, 168

               
               
               Conread position:20-198
               
               
               Cow position:chr19:7637307-7637120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 170

               
               
               Conread position:20-198
               
               
               Cow position:chr19:32506190-32506002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 171

               
               
               Conread position:20-201
               
               
               Cow position:chr19:268285-268473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:20-201
               
               
               Cow position:chr19:25041305-25041128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):28, 105

               
               
               Conread position:20-201
               
               
               Cow position:chr19:39664648-39664458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:20-201
               
               
               Cow position:chr19:39758452-39758640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):35, 129

               
               
               Conread position:20-204
               
               
               Cow position:chr19:4459510-4459317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):31, 17

               
               
               Conread position:20-204
               
               
               Cow position:chr19:6849259-6849071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):73, 26

               
               
               Conread position:20-204
               
               
               Cow position:chr19:8869511-8869702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr19:18505235-18505044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):32, 6

               
               
               Conread position:20-207
               
               
               Cow position:chr19:38111403-38111589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):17, 89

               
               
               Conread position:20-208
               
               
               Cow position:chr19:53243543-53243353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):37, 18

               
               
               Conread position:20-213
               
               
               Cow position:chr19:43372975-43373170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):59, 23

               
               
               Conread position:20-214
               
               
               Cow position:chr19:6688066-6687870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 23

               
               
               Conread position:20-221
               
               
               Cow position:chr19:42235958-42236167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:20-231
               
               
               Cow position:chr19:43203057-43202841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):26, 45

               
               
               Conread position:20-301
               
               
               Cow position:chr19:35233716-35233447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):67, 6

               
               
               Conread position:20-301
               
               
               Cow position:chr19:50682509-50682242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):32, 93

               
               
               Conread position:20-312
               
               
               Cow position:chr19:54915761-54915477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 175

               
               
               Conread position:20-319
               
               
               Cow position:chr19:4800674-4800975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 173

               
               
               Conread position:21-161
               
               
               Cow position:chr19:4329117-4328974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:21-192
               
               
               Cow position:chr19:33290417-33290596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:21-196
               
               
               Cow position:chr19:43780-43957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 16

               
               
               Conread position:21-196
               
               
               Cow position:chr19:34819258-34819072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:21-204
               
               
               Cow position:chr19:55247569-55247754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):72, 17

               
               
               Conread position:21-209
               
               
               Cow position:chr19:30227453-30227645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):40, 177

               
               
               Conread position:21-209
               
               
               Cow position:chr19:53840455-53840643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):37, 14

               
               
               Conread position:21-214
               
               
               Cow position:chr19:6344001-6344205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):31, 129

               
               
               Conread position:22-207
               
               
               Cow position:chr19:34166302-34166491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):24, 74

               
               
               Conread position:23-189
               
               
               Cow position:chr19:28037973-28037800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):28, 163

               
               
               Conread position:23-201
               
               
               Cow position:chr19:23222570-23222749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):29, 89

               
               
               Conread position:23-201
               
               
               Cow position:chr19:28447374-28447559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 15

               
               
               Conread position:24-201
               
               
               Cow position:chr19:39781452-39781639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:24-209
               
               
               Cow position:chr19:25382751-25382560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:26-207
               
               
               Cow position:chr19:36845185-36845375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:26-209
               
               
               Cow position:chr19:43431388-43431202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):37, 11

               
               
               Conread position:26-215
               
               
               Cow position:chr19:52215099-52215292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):27, 183

               
               
               Conread position:29-201
               
               
               Cow position:chr19:22817065-22816898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):23, 56

               
               
               Conread position:29-208
               
               
               Cow position:chr19:11194819-11194636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:30-218
               
               
               Cow position:chr19:27966201-27966011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):60, 32

               
               
               Conread position:32-196
               
               
               Cow position:chr19:24956291-24956128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):61, 73

               
               
               Conread position:34-213
               
               
               Cow position:chr19:21199087-21199270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:35-189
               
               
               Cow position:chr19:52185815-52185658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):58, 11

               
               
               Conread position:35-207
               
               
               Cow position:chr19:12698270-12698443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):44, 22

               
               
               Conread position:35-304
               
               
               Cow position:chr19:10081021-10081276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):24, 153

               
               
               Conread position:35-312
               
               
               Cow position:chr19:18921299-18921025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):24, 166

               
               
               Conread position:36-173
               
               
               Cow position:chr19:53799869-53799728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:36-188
               
               
               Cow position:chr19:23087936-23088090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):57, 10

               
               
               Conread position:36-200
               
               
               Cow position:chr19:39613216-39613047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):19, 122

               
               
               Conread position:36-204
               
               
               Cow position:chr19:20379086-20378909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:36-207
               
               
               Cow position:chr19:33913477-33913652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):9, 27

               
               
               Conread position:36-221
               
               
               Cow position:chr19:17795851-17796031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):84, 28

               
               
               Conread position:37-195
               
               
               Cow position:chr19:11646518-11646680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:37-213
               
               
               Cow position:chr19:46713588-46713767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):49, 134

               
               
               Conread position:38-188
               
               
               Cow position:chr19:5406452-5406607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:38-199
               
               
               Cow position:chr19:29115706-29115860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:38-207
               
               
               Cow position:chr19:41497691-41497520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 24

               
               
               Conread position:39-187
               
               
               Cow position:chr19:39795144-39795296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):49, 23

               
               
               Conread position:39-229
               
               
               Cow position:chr19:12705884-12705691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):54, 18

               
               
               Conread position:39-237
               
               
               Cow position:chr19:33241551-33241354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):47, 11

               
               
               Conread position:40-195
               
               
               Cow position:chr19:23756787-23756629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:40-197
               
               
               Cow position:chr19:21176793-21176626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):10, 144

               
               
               Conread position:40-201
               
               
               Cow position:chr19:49290503-49290338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:42-304
               
               
               Cow position:chr19:10114674-10114418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:43-197
               
               
               Cow position:chr19:10930458-10930303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:45-201
               
               
               Cow position:chr19:2068226-2068386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:45-207
               
               
               Cow position:chr19:30007152-30007310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):48, 12

               
               
               Conread position:45-213
               
               
               Cow position:chr19:2965501-2965671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):46, 92

               
               
               Conread position:46-186
               
               
               Cow position:chr19:11348604-11348747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):44, 16

               
               
               Conread position:46-189
               
               
               Cow position:chr19:38500128-38500271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:46-198
               
               
               Cow position:chr19:25763075-25763227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:46-198
               
               
               Cow position:chr19:26167951-26167797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:46-198
               
               
               Cow position:chr19:26269267-26269118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):64, 16

               
               
               Conread position:46-210
               
               
               Cow position:chr19:55957608-55957445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):65, 145

               
               
               Conread position:46-212
               
               
               Cow position:chr19:23831311-23831476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):135, 47

               
               
               Conread position:47-195
               
               
               Cow position:chr19:18786359-18786209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):46, 15

               
               
               Conread position:47-205
               
               
               Cow position:chr19:53378663-53378825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:50-186
               
               
               Cow position:chr19:13325520-13325381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:50-301
               
               
               Cow position:chr19:27348321-27348081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):244, 37

               
               
               Conread position:56-176
               
               
               Cow position:chr19:53497378-53497501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:57-184
               
               
               Cow position:chr19:39622817-39622688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):22, 63

               
               
               Conread position:57-214
               
               
               Cow position:chr19:9391180-9391019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:57-220
               
               
               Cow position:chr19:7676106-7675943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 55

               
               
               Conread position:57-231
               
               
               Cow position:chr19:7675205-7675381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 145

               
               
               Conread position:61-198
               
               
               Cow position:chr19:11866332-11866194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):32, 55

               
               
               Conread position:61-201
               
               
               Cow position:chr19:6854304-6854165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):34, 113

               
               
               Conread position:61-201
               
               
               Cow position:chr19:35245917-35246061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:61-207
               
               
               Cow position:chr19:8185178-8185327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):32, 135

               
               
               Conread position:61-207
               
               
               Cow position:chr19:38021419-38021564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 82

               
               
               Conread position:63-304
               
               
               Cow position:chr19:51397219-51396980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):30, 155

               
               
               Conread position:64-304
               
               
               Cow position:chr19:22438624-22438873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):29, 105

               
               
               Conread position:66-228
               
               
               Cow position:chr19:17068837-17069001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):10, 46

               
               
               Conread position:67-198
               
               
               Cow position:chr19:31998292-31998157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:68-201
               
               
               Cow position:chr19:30241680-30241817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:68-214
               
               
               Cow position:chr19:46300407-46300554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:70-215
               
               
               Cow position:chr19:38717364-38717205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:72-301
               
               
               Cow position:chr19:9733580-9733339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):21, 212

               
               
               Conread position:73-196
               
               
               Cow position:chr19:4586556-4586432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 5

               
               
               Conread position:74-222
               
               
               Cow position:chr19:55175492-55175339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):17, 112

               
               
               Conread position:75-201
               
               
               Cow position:chr19:29139194-29139321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:76-209
               
               
               Cow position:chr19:1897962-1897826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 102

               
               
               Conread position:77-208
               
               
               Cow position:chr19:12469815-12469685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):16, 28

               
               
               Conread position:78-184
               
               
               Cow position:chr19:25927415-25927306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:79-187
               
               
               Cow position:chr19:4339646-4339536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-189
               
               
               Cow position:chr19:29958683-29958568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-201
               
               
               Cow position:chr19:14581358-14581481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-201
               
               
               Cow position:chr19:33931863-33931740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):8, 110

               
               
               Conread position:79-201
               
               
               Cow position:chr19:38630900-38630776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-201
               
               
               Cow position:chr19:52356247-52356372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-213
               
               
               Cow position:chr19:2042082-2042213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:79-213
               
               
               Cow position:chr19:55724408-55724272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-214
               
               
               Cow position:chr19:15076207-15076068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:79-254
               
               
               Cow position:chr19:38624965-38625138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):16, 103

               
               
               Conread position:79-257
               
               
               Cow position:chr19:8034349-8034173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):145, 6

               
               
               Conread position:79-304
               
               
               Cow position:chr19:19561791-19562013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):8, 154

               
               
               Conread position:79-312
               
               
               Cow position:chr19:29972260-29972038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):14, 8

               
               
               Conread position:80-322
               
               
               Cow position:chr19:10287442-10287678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):13, 106

               
               
               Conread position:82-189
               
               
               Cow position:chr19:26869863-26869970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):28, 7

               
               
               Conread position:82-207
               
               
               Cow position:chr19:42776429-42776556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):20, 52

               
               
               Conread position:82-212
               
               
               Cow position:chr19:1553706-1553835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):5, 62

               
               
               Conread position:83-312
               
               
               Cow position:chr19:19014252-19014483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:85-209
               
               
               Cow position:chr19:21723706-21723581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):25, 58

               
               
               Conread position:86-310
               
               
               Cow position:chr19:43642791-43642568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):24, 137

               
               
               Conread position:88-201
               
               
               Cow position:chr19:52568470-52568355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:88-204
               
               
               Cow position:chr19:5522150-5522033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:88-293
               
               
               Cow position:chr19:25696225-25696029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):22, 80

               
               
               Conread position:89-188
               
               
               Cow position:chr19:33626355-33626255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:83
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:89-309
               
               
               Cow position:chr19:21044359-21044572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):21, 56

               
               
               Conread position:96-215
               
               
               Cow position:chr19:51637053-51637173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:100-246
               
               
               Cow position:chr19:18344526-18344379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):5, 107

               
               
               Conread position:102-319
               
               
               Cow position:chr19:42777869-42778080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):125, 48

               
               
               Conread position:109-237
               
               
               Cow position:chr19:11754562-11754433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:110-218
               
               
               Cow position:chr19:14906966-14907073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):98, 81

               
               
               Conread position:110-265
               
               
               Cow position:chr19:54919819-54919661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:110-299
               
               
               Cow position:chr19:13452079-13451880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):81, 70

               
               
               Conread position:116-309
               
               
               Cow position:chr19:29471625-29471804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):34, 23

               
               
               Conread position:119-231
               
               
               Cow position:chr19:33702317-33702205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:131-311
               
               
               Cow position:chr19:22218512-22218335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):112, 93

               
               
               Conread position:140-304
               
               
               Cow position:chr19:48035194-48035351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:142-319
               
               
               Cow position:chr19:20301572-20301386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:170-318
               
               
               Cow position:chr19:25825762-25825914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):20, 8

               
               
               Conread position:193-304
               
               
               Cow position:chr19:18344369-18344260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:1-151
               
               
               Cow position:chr2:70658937-70658779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-169
               
               
               Cow position:chr2:23539791-23539962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):52, 35

               
               
               Conread position:1-171
               
               
               Cow position:chr2:70945326-70945505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1-174
               
               
               Cow position:chr2:39489703-39489878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):89, 61

               
               
               Conread position:1-175
               
               
               Cow position:chr2:25448245-25448433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:1-175
               
               
               Cow position:chr2:39564276-39564458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):21, 136

               
               
               Conread position:1-176
               
               
               Cow position:chr2:47055831-47056013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 34

               
               
               Conread position:1-181
               
               
               Cow position:chr2:21380480-21380292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):11, 101

               
               
               Conread position:1-183
               
               
               Cow position:chr2:7573583-7573392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-187
               
               
               Cow position:chr2:14089714-14089910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:1-187
               
               
               Cow position:chr2:33262689-33262500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):61, 173

               
               
               Conread position:1-188
               
               
               Cow position:chr2:80275371-80275176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-189
               
               
               Cow position:chr2:13935625-13935826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):24, 103

               
               
               Conread position:1-189
               
               
               Cow position:chr2:80177667-80177472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):21, 130

               
               
               Conread position:1-198
               
               
               Cow position:chr2:12686867-12686661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):50, 42

               
               
               Conread position:1-198
               
               
               Cow position:chr2:44170482-44170686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):50, 37

               
               
               Conread position:1-198
               
               
               Cow position:chr2:45575072-45574876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):85, 37

               
               
               Conread position:1-200
               
               
               Cow position:chr2:14710190-14709990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):27, 60

               
               
               Conread position:1-201
               
               
               Cow position:chr2:46052421-46052629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):22, 188

               
               
               Conread position:1-201
               
               
               Cow position:chr2:60910115-60910321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):48, 27

               
               
               Conread position:1-204
               
               
               Cow position:chr2:19212136-19211923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):18, 163

               
               
               Conread position:1-204
               
               
               Cow position:chr2:39584375-39584582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):62, 42

               
               
               Conread position:1-207
               
               
               Cow position:chr2:55496370-55496159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):18, 47

               
               
               Conread position:1-207
               
               
               Cow position:chr2:69579761-69579542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):24, 46

               
               
               Conread position:1-208
               
               
               Cow position:chr2:28711075-28710866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):54, 16

               
               
               Conread position:1-209
               
               
               Cow position:chr2:26806201-26805978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):21, 119

               
               
               Conread position:1-209
               
               
               Cow position:chr2:46227382-46227598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):50, 79

               
               
               Conread position:1-209
               
               
               Cow position:chr2:84970792-84970574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-210
               
               
               Cow position:chr2:19502563-19502346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):18, 48

               
               
               Conread position:1-212
               
               
               Cow position:chr2:60429201-60429420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 160

               
               
               Conread position:1-215
               
               
               Cow position:chr2:62861511-62861734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):62, 184

               
               
               Conread position:1-222
               
               
               Cow position:chr2:16514705-16514928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):27, 94

               
               
               Conread position:1-222
               
               
               Cow position:chr2:32403049-32402817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):48, 203

               
               
               Conread position:1-223
               
               
               Cow position:chr2:23271005-23270778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):54, 42

               
               
               Conread position:1-223
               
               
               Cow position:chr2:24434360-24434129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):21, 76

               
               
               Conread position:1-227
               
               
               Cow position:chr2:7383757-7383532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):21, 51

               
               
               Conread position:1-250
               
               
               Cow position:chr2:58135478-58135213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):18, 206

               
               
               Conread position:1-251
               
               
               Cow position:chr2:44229771-44229509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):28, 97

               
               
               Conread position:1-299
               
               
               Cow position:chr2:53851358-53851655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):21, 199

               
               
               Conread position:1-305
               
               
               Cow position:chr2:78530132-78529834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):78, 195

               
               
               Conread position:1-310
               
               
               Cow position:chr2:32416939-32416611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):25, 290

               
               
               Conread position:1-311
               
               
               Cow position:chr2:44550922-44550618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):24, 101

               
               
               Conread position:1-311
               
               
               Cow position:chr2:74260378-74260698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):20, 151

               
               
               Conread position:1-312
               
               
               Cow position:chr2:56846664-56846987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:1-323
               
               
               Cow position:chr2:6372072-6371741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 66

               
               
               Conread position:2-202
               
               
               Cow position:chr2:39371337-39371546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):20, 131

               
               
               Conread position:2-207
               
               
               Cow position:chr2:43131029-43131232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:3-165
               
               
               Cow position:chr2:50766405-50766567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):90, 40

               
               
               Conread position:3-184
               
               
               Cow position:chr2:41461292-41461483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr2:65587078-65587271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:3-189
               
               
               Cow position:chr2:30351784-30351587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:3-189
               
               
               Cow position:chr2:42192357-42192556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):16, 163

               
               
               Conread position:3-198
               
               
               Cow position:chr2:22372028-22371824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):20, 38

               
               
               Conread position:3-207
               
               
               Cow position:chr2:43444518-43444734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):12, 65

               
               
               Conread position:3-208
               
               
               Cow position:chr2:40403106-40402889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:3-215
               
               
               Cow position:chr2:8821156-8821377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:3-279
               
               
               Cow position:chr2:85496408-85496137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):20, 10

               
               
               Conread position:3-308
               
               
               Cow position:chr2:20362729-20362406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:233
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):17, 115

               
               
               Conread position:3-311
               
               
               Cow position:chr2:32408572-32408273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):16, 45

               
               
               Conread position:4-168
               
               
               Cow position:chr2:26880011-26880180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):51, 92

               
               
               Conread position:4-188
               
               
               Cow position:chr2:40466558-40466753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):9, 37

               
               
               Conread position:4-201
               
               
               Cow position:chr2:41040784-41040579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):37, 85

               
               
               Conread position:4-202
               
               
               Cow position:chr2:41954811-41955017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):46, 155

               
               
               Conread position:4-247
               
               
               Cow position:chr2:43029466-43029722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):89, 39

               
               
               Conread position:4-305
               
               
               Cow position:chr2:44004885-44005185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 8

               
               
               Conread position:5-140
               
               
               Cow position:chr2:34535228-34535087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:5-176
               
               
               Cow position:chr2:1487102-1487277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):57, 38

               
               
               Conread position:5-176
               
               
               Cow position:chr2:9098789-9098608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:5-176
               
               
               Cow position:chr2:50580302-50580468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:5-178
               
               
               Cow position:chr2:39815356-39815176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:5-179
               
               
               Cow position:chr2:30816891-30817077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:5-182
               
               
               Cow position:chr2:44232522-44232341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-183
               
               
               Cow position:chr2:13604396-13604582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr2:32446406-32446227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):83, 38

               
               
               Conread position:5-184
               
               
               Cow position:chr2:47065038-47065221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:5-185
               
               
               Cow position:chr2:82262449-82262260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):36, 50

               
               
               Conread position:5-186
               
               
               Cow position:chr2:58869232-58869047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):43, 53

               
               
               Conread position:5-186
               
               
               Cow position:chr2:76313939-76313753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):43, 159

               
               
               Conread position:5-187
               
               
               Cow position:chr2:51638484-51638668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):74, 51

               
               
               Conread position:5-188
               
               
               Cow position:chr2:13000849-13001030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):104, 45

               
               
               Conread position:5-189
               
               
               Cow position:chr2:7524206-7524013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr2:28303253-28303438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):85, 45

               
               
               Conread position:5-189
               
               
               Cow position:chr2:43123266-43123458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr2:46119832-46119649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):102, 45

               
               
               Conread position:5-189
               
               
               Cow position:chr2:65931892-65932084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr2:83410438-83410625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:5-190
               
               
               Cow position:chr2:12051080-12051269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):54, 106

               
               
               Conread position:5-192
               
               
               Cow position:chr2:15250107-15250304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):45, 141

               
               
               Conread position:5-194
               
               
               Cow position:chr2:44482718-44482531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):54, 37

               
               
               Conread position:5-194
               
               
               Cow position:chr2:69367200-69367001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:5-194
               
               
               Cow position:chr2:80963718-80963525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):54, 103

               
               
               Conread position:5-195
               
               
               Cow position:chr2:14854243-14854429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):107, 41

               
               
               Conread position:5-195
               
               
               Cow position:chr2:15348319-15348518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-195
               
               
               Cow position:chr2:68328924-68328728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):85, 50

               
               
               Conread position:5-195
               
               
               Cow position:chr2:70495201-70495394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):42, 67

               
               
               Conread position:5-196
               
               
               Cow position:chr2:15059132-15058939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 22

               
               
               Conread position:5-196
               
               
               Cow position:chr2:54700380-54700582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-196
               
               
               Cow position:chr2:76110325-76110521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):53, 23

               
               
               Conread position:5-197
               
               
               Cow position:chr2:24593799-24593993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 94

               
               
               Conread position:5-197
               
               
               Cow position:chr2:29859938-29860129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):67, 38

               
               
               Conread position:5-198
               
               
               Cow position:chr2:192538-192339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):54, 160

               
               
               Conread position:5-198
               
               
               Cow position:chr2:387846-387645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr2:12558601-12558403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):86, 38

               
               
               Conread position:5-198
               
               
               Cow position:chr2:29159837-29160035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):48, 32

               
               
               Conread position:5-198
               
               
               Cow position:chr2:39513952-39514163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr2:41248495-41248698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):38, 180

               
               
               Conread position:5-198
               
               
               Cow position:chr2:44051238-44051435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):50, 33

               
               
               Conread position:5-198
               
               
               Cow position:chr2:66480260-66480058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr2:68190713-68190515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):59, 112

               
               
               Conread position:5-200
               
               
               Cow position:chr2:38658854-38658657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):42, 78

               
               
               Conread position:5-200
               
               
               Cow position:chr2:42255364-42255567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):38, 55

               
               
               Conread position:5-200
               
               
               Cow position:chr2:80770046-80770243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):44, 103

               
               
               Conread position:5-201
               
               
               Cow position:chr2:19137965-19137759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr2:24218280-24218085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):77, 32

               
               
               Conread position:5-201
               
               
               Cow position:chr2:40488738-40488939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 93

               
               
               Conread position:5-201
               
               
               Cow position:chr2:42183297-42183503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr2:42607994-42608197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr2:44222750-44222955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):46, 33

               
               
               Conread position:5-201
               
               
               Cow position:chr2:46120714-46120511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):49, 93

               
               
               Conread position:5-201
               
               
               Cow position:chr2:48635116-48634916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 181

               
               
               Conread position:5-201
               
               
               Cow position:chr2:55632706-55632906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):48, 134

               
               
               Conread position:5-201
               
               
               Cow position:chr2:69199388-69199190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):45, 31

               
               
               Conread position:5-201
               
               
               Cow position:chr2:79837788-79837595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):85, 32

               
               
               Conread position:5-202
               
               
               Cow position:chr2:46189170-46188964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):37, 65

               
               
               Conread position:5-204
               
               
               Cow position:chr2:4016911-4016714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):47, 82

               
               
               Conread position:5-204
               
               
               Cow position:chr2:17967101-17966895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-204
               
               
               Cow position:chr2:18997653-18997853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):88, 45

               
               
               Conread position:5-204
               
               
               Cow position:chr2:25283041-25283250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:5-204
               
               
               Cow position:chr2:33472059-33471860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 20

               
               
               Conread position:5-204
               
               
               Cow position:chr2:69350640-69350431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-204
               
               
               Cow position:chr2:70704183-70704392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-205
               
               
               Cow position:chr2:40597502-40597704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):50, 95

               
               
               Conread position:5-206
               
               
               Cow position:chr2:47047824-47047621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:5-206
               
               
               Cow position:chr2:67927867-67927659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):44, 32

               
               
               Conread position:5-207
               
               
               Cow position:chr2:13369584-13369791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):38, 21

               
               
               Conread position:5-207
               
               
               Cow position:chr2:17328677-17328888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):50, 28

               
               
               Conread position:5-207
               
               
               Cow position:chr2:46204445-46204653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:5-207
               
               
               Cow position:chr2:46343214-46343012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):42, 59

               
               
               Conread position:5-207
               
               
               Cow position:chr2:54967935-54968143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):7, 168

               
               
               Conread position:5-207
               
               
               Cow position:chr2:67386551-67386337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):50, 38

               
               
               Conread position:5-207
               
               
               Cow position:chr2:67596094-67595883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr2:72527887-72528096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):58, 167

               
               
               Conread position:5-207
               
               
               Cow position:chr2:76762144-76762353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:5-207
               
               
               Cow position:chr2:80116026-80116231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):58, 163

               
               
               Conread position:5-208
               
               
               Cow position:chr2:45542466-45542261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:5-209
               
               
               Cow position:chr2:6901707-6901915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-209
               
               
               Cow position:chr2:8843899-8843690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-209
               
               
               Cow position:chr2:18621335-18621555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-209
               
               
               Cow position:chr2:28820291-28820505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):51, 33

               
               
               Conread position:5-209
               
               
               Cow position:chr2:44007346-44007562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):46, 33

               
               
               Conread position:5-209
               
               
               Cow position:chr2:56350991-56350778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):43, 199

               
               
               Conread position:5-209
               
               
               Cow position:chr2:74249295-74249089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):85, 38

               
               
               Conread position:5-210
               
               
               Cow position:chr2:43474105-43474316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):48, 23

               
               
               Conread position:5-212
               
               
               Cow position:chr2:70781025-70781233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):47, 29

               
               
               Conread position:5-213
               
               
               Cow position:chr2:46383537-46383323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:5-214
               
               
               Cow position:chr2:33988385-33988172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):85, 38

               
               
               Conread position:5-214
               
               
               Cow position:chr2:67745182-67745384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):58, 32

               
               
               Conread position:5-215
               
               
               Cow position:chr2:41622409-41622624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):43, 193

               
               
               Conread position:5-216
               
               
               Cow position:chr2:44025303-44025523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):42, 115

               
               
               Conread position:5-217
               
               
               Cow position:chr2:55278672-55278445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):46, 221

               
               
               Conread position:5-217
               
               
               Cow position:chr2:85339533-85339310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-222
               
               
               Cow position:chr2:46294110-46293899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:5-223
               
               
               Cow position:chr2:44191406-44191632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):49, 169

               
               
               Conread position:5-223
               
               
               Cow position:chr2:62644517-62644748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-226
               
               
               Cow position:chr2:72407567-72407345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:5-228
               
               
               Cow position:chr2:61421240-61421014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):58, 38

               
               
               Conread position:5-235
               
               
               Cow position:chr2:38273473-38273707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):42, 161

               
               
               Conread position:5-245
               
               
               Cow position:chr2:46230832-46230583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:5-257
               
               
               Cow position:chr2:69250742-69250489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):41, 96

               
               
               Conread position:5-272
               
               
               Cow position:chr2:39597891-39598161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):47, 112

               
               
               Conread position:5-287
               
               
               Cow position:chr2:48130549-48130835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):47, 151

               
               
               Conread position:5-288
               
               
               Cow position:chr2:44081363-44081650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 138

               
               
               Conread position:5-289
               
               
               Cow position:chr2:47624475-47624196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:5-293
               
               
               Cow position:chr2:28257392-28257665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):46, 148

               
               
               Conread position:5-293
               
               
               Cow position:chr2:45439369-45439668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):47, 89

               
               
               Conread position:5-301
               
               
               Cow position:chr2:73353721-73354003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):60, 94

               
               
               Conread position:5-304
               
               
               Cow position:chr2:6697567-6697254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):54, 91

               
               
               Conread position:5-304
               
               
               Cow position:chr2:13271490-13271167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):58, 79

               
               
               Conread position:5-304
               
               
               Cow position:chr2:42927519-42927225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):46, 61

               
               
               Conread position:5-304
               
               
               Cow position:chr2:64131349-64131648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 92

               
               
               Conread position:5-304
               
               
               Cow position:chr2:77281948-77282242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):57, 167

               
               
               Conread position:5-308
               
               
               Cow position:chr2:69747691-69747381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):38, 196

               
               
               Conread position:5-310
               
               
               Cow position:chr2:12840115-12839823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):46, 25

               
               
               Conread position:5-310
               
               
               Cow position:chr2:72310077-72309791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:5-311
               
               
               Cow position:chr2:39798167-39798480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 196

               
               
               Conread position:5-311
               
               
               Cow position:chr2:45623945-45624238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):86, 190

               
               
               Conread position:5-311
               
               
               Cow position:chr2:70895961-70896256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:5-311
               
               
               Cow position:chr2:72183567-72183259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 182

               
               
               Conread position:5-323
               
               
               Cow position:chr2:21416233-21416543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):59, 38

               
               
               Conread position:6-176
               
               
               Cow position:chr2:22113773-22113591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):53, 172

               
               
               Conread position:6-176
               
               
               Cow position:chr2:78197802-78197974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):80, 37

               
               
               Conread position:6-188
               
               
               Cow position:chr2:17410075-17409889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):54, 37

               
               
               Conread position:6-197
               
               
               Cow position:chr2:70847335-70847135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):16, 33

               
               
               Conread position:6-201
               
               
               Cow position:chr2:45499273-45499071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:6-311
               
               
               Cow position:chr2:25597566-25597265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):50, 163

               
               
               Conread position:7-176
               
               
               Cow position:chr2:50277955-50278128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):35, 139

               
               
               Conread position:7-189
               
               
               Cow position:chr2:46971049-46971243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:7-195
               
               
               Cow position:chr2:70908391-70908203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):72, 55

               
               
               Conread position:7-200
               
               
               Cow position:chr2:43624607-43624403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:7-201
               
               
               Cow position:chr2:43790029-43790232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 31

               
               
               Conread position:7-201
               
               
               Cow position:chr2:45642560-45642356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 113

               
               
               Conread position:7-201
               
               
               Cow position:chr2:46312382-46312571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):82, 35

               
               
               Conread position:7-204
               
               
               Cow position:chr2:64323173-64323374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):72, 36

               
               
               Conread position:7-207
               
               
               Cow position:chr2:17940356-17940151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:164
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:7-207
               
               
               Cow position:chr2:43835631-43835426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):39, 177

               
               
               Conread position:7-223
               
               
               Cow position:chr2:870416-870206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):48, 87

               
               
               Conread position:7-223
               
               
               Cow position:chr2:81927784-81928000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):52, 98

               
               
               Conread position:7-312
               
               
               Cow position:chr2:47644983-47645311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):86, 55

               
               
               Conread position:7-313
               
               
               Cow position:chr2:79138171-79138502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):15, 119

               
               
               Conread position:10-201
               
               
               Cow position:chr2:71622116-71621917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:12-172
               
               
               Cow position:chr2:32431803-32431636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 7

               
               
               Conread position:12-189
               
               
               Cow position:chr2:29802191-29802017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:12-189
               
               
               Cow position:chr2:65890689-65890507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):10, 33

               
               
               Conread position:12-189
               
               
               Cow position:chr2:84480570-84480382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:12-201
               
               
               Cow position:chr2:549395-549199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):10, 106

               
               
               Conread position:12-201
               
               
               Cow position:chr2:1762729-1762923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):30, 15

               
               
               Conread position:12-201
               
               
               Cow position:chr2:19287149-19286950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 56

               
               
               Conread position:12-207
               
               
               Cow position:chr2:14826220-14826413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):81, 23

               
               
               Conread position:12-207
               
               
               Cow position:chr2:32660111-32660314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:12-214
               
               
               Cow position:chr2:27337841-27337635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):10, 66

               
               
               Conread position:12-311
               
               
               Cow position:chr2:22042468-22042761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):10, 194

               
               
               Conread position:13-187
               
               
               Cow position:chr2:52596789-52596617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):35, 83

               
               
               Conread position:13-188
               
               
               Cow position:chr2:58035038-58035224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):9, 179

               
               
               Conread position:13-198
               
               
               Cow position:chr2:40880004-40880196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:13-208
               
               
               Cow position:chr2:24530305-24530504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 12

               
               
               Conread position:13-212
               
               
               Cow position:chr2:20791495-20791294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):39, 193

               
               
               Conread position:13-213
               
               
               Cow position:chr2:39263426-39263630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):11, 102

               
               
               Conread position:13-218
               
               
               Cow position:chr2:83233831-83234042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:13-220
               
               
               Cow position:chr2:39663310-39663516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):33, 86

               
               
               Conread position:14-197
               
               
               Cow position:chr2:46948952-46948763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):32, 52

               
               
               Conread position:15-198
               
               
               Cow position:chr2:36575679-36575862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):78, 41

               
               
               Conread position:15-201
               
               
               Cow position:chr2:994427-994234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:15-204
               
               
               Cow position:chr2:19494149-19494351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:15-204
               
               
               Cow position:chr2:41157916-41158096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):7, 29

               
               
               Conread position:15-207
               
               
               Cow position:chr2:32264451-32264256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 48

               
               
               Conread position:15-220
               
               
               Cow position:chr2:38647220-38647014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 23

               
               
               Conread position:16-300
               
               
               Cow position:chr2:9687633-9687325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):42, 27

               
               
               Conread position:17-184
               
               
               Cow position:chr2:14734050-14734218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):76, 26

               
               
               Conread position:17-197
               
               
               Cow position:chr2:27173310-27173494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):42, 21

               
               
               Conread position:19-189
               
               
               Cow position:chr2:53501094-53500916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:19-196
               
               
               Cow position:chr2:12682719-12682536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 19

               
               
               Conread position:19-199
               
               
               Cow position:chr2:63331861-63331673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):44, 8

               
               
               Conread position:19-206
               
               
               Cow position:chr2:46055197-46055008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 16

               
               
               Conread position:19-219
               
               
               Cow position:chr2:40728296-40728498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):74, 38

               
               
               Conread position:19-301
               
               
               Cow position:chr2:34918074-34918363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):40, 97

               
               
               Conread position:19-313
               
               
               Cow position:chr2:76562048-76562332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):44, 154

               
               
               Conread position:20-182
               
               
               Cow position:chr2:64213005-64213174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):26, 97

               
               
               Conread position:20-183
               
               
               Cow position:chr2:16018288-16018119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):43, 23

               
               
               Conread position:20-183
               
               
               Cow position:chr2:56937625-56937793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:20-186
               
               
               Cow position:chr2:56003181-56003353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:20-186
               
               
               Cow position:chr2:73790054-73789875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-187
               
               
               Cow position:chr2:16428458-16428284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):26, 81

               
               
               Conread position:20-187
               
               
               Cow position:chr2:26102716-26102884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):73, 30

               
               
               Conread position:20-196
               
               
               Cow position:chr2:24858951-24859138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 149

               
               
               Conread position:20-196
               
               
               Cow position:chr2:35988674-35988493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:20-196
               
               
               Cow position:chr2:42970052-42970235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):26, 117

               
               
               Conread position:20-196
               
               
               Cow position:chr2:68870634-68870817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):35, 23

               
               
               Conread position:20-198
               
               
               Cow position:chr2:69823531-69823717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):43, 184

               
               
               Conread position:20-200
               
               
               Cow position:chr2:66149273-66149454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 23

               
               
               Conread position:20-201
               
               
               Cow position:chr2:28726415-28726599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 32

               
               
               Conread position:20-201
               
               
               Cow position:chr2:37113247-37113067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):26, 77

               
               
               Conread position:20-201
               
               
               Cow position:chr2:45565647-45565840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr2:6038951-6039149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):26, 154

               
               
               Conread position:20-207
               
               
               Cow position:chr2:19394496-19394689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:20-207
               
               
               Cow position:chr2:26851106-26851299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:20-207
               
               
               Cow position:chr2:36963467-36963659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):26, 70

               
               
               Conread position:20-207
               
               
               Cow position:chr2:44022865-44022669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-208
               
               
               Cow position:chr2:14218591-14218789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:20-209
               
               
               Cow position:chr2:19294535-19294726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 122

               
               
               Conread position:20-209
               
               
               Cow position:chr2:32048424-32048618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 16

               
               
               Conread position:20-209
               
               
               Cow position:chr2:36017472-36017275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 78

               
               
               Conread position:20-209
               
               
               Cow position:chr2:49467571-49467766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 180

               
               
               Conread position:20-211
               
               
               Cow position:chr2:48525599-48525402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 169

               
               
               Conread position:20-214
               
               
               Cow position:chr2:67479916-67480119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:20-219
               
               
               Cow position:chr2:30642719-30642514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):44, 26

               
               
               Conread position:20-220
               
               
               Cow position:chr2:47073137-47073334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):45, 61

               
               
               Conread position:20-221
               
               
               Cow position:chr2:19062116-19062317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 74

               
               
               Conread position:20-262
               
               
               Cow position:chr2:81388633-81388890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:20-307
               
               
               Cow position:chr2:38969563-38969282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):35, 16

               
               
               Conread position:20-308
               
               
               Cow position:chr2:39237359-39237643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):38, 22

               
               
               Conread position:20-308
               
               
               Cow position:chr2:39544861-39544560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):29, 254

               
               
               Conread position:21-186
               
               
               Cow position:chr2:13645264-13645434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 22

               
               
               Conread position:21-187
               
               
               Cow position:chr2:61196688-61196857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):27, 111

               
               
               Conread position:21-201
               
               
               Cow position:chr2:2485787-2485972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):21, 124

               
               
               Conread position:21-202
               
               
               Cow position:chr2:13582526-13582716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):35, 110

               
               
               Conread position:21-204
               
               
               Cow position:chr2:46130204-46130026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:21-207
               
               
               Cow position:chr2:59397112-59396917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):32, 116

               
               
               Conread position:21-213
               
               
               Cow position:chr2:13062280-13062077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):28, 150

               
               
               Conread position:21-216
               
               
               Cow position:chr2:16505531-16505332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):25, 159

               
               
               Conread position:21-312
               
               
               Cow position:chr2:40802946-40803235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:219
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):26, 75

               
               
               Conread position:22-196
               
               
               Cow position:chr2:46161899-46162083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:22-198
               
               
               Cow position:chr2:1317940-1317753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):27, 16

               
               
               Conread position:22-201
               
               
               Cow position:chr2:65830389-65830206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):29, 15

               
               
               Conread position:22-301
               
               
               Cow position:chr2:46124758-46124491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):29, 89

               
               
               Conread position:23-184
               
               
               Cow position:chr2:13013035-13013204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:23-197
               
               
               Cow position:chr2:46614349-46614528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:23-201
               
               
               Cow position:chr2:57565388-57565204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:23-207
               
               
               Cow position:chr2:26438779-26438590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):38, 166

               
               
               Conread position:23-221
               
               
               Cow position:chr2:44217963-44217760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 164

               
               
               Conread position:23-312
               
               
               Cow position:chr2:47097989-47097722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):68, 46

               
               
               Conread position:24-198
               
               
               Cow position:chr2:15871884-15872063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):32, 14

               
               
               Conread position:24-223
               
               
               Cow position:chr2:21671467-21671669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:26-187
               
               
               Cow position:chr2:41915466-41915314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):67, 12

               
               
               Conread position:26-198
               
               
               Cow position:chr2:45478645-45478469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):29, 17

               
               
               Conread position:26-207
               
               
               Cow position:chr2:44986375-44986192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):28, 12

               
               
               Conread position:27-304
               
               
               Cow position:chr2:46733978-46733701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):59, 30

               
               
               Conread position:29-220
               
               
               Cow position:chr2:28285414-28285216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:31-184
               
               
               Cow position:chr2:45367256-45367407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):29, 63

               
               
               Conread position:34-186
               
               
               Cow position:chr2:10790130-10790287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:35-207
               
               
               Cow position:chr2:5300557-5300732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):53, 133

               
               
               Conread position:35-229
               
               
               Cow position:chr2:53575355-53575556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:36-187
               
               
               Cow position:chr2:20900499-20900346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:37-188
               
               
               Cow position:chr2:40257450-40257294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:37-201
               
               
               Cow position:chr2:53652814-53652981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):54, 131

               
               
               Conread position:37-208
               
               
               Cow position:chr2:12988555-12988722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:37-309
               
               
               Cow position:chr2:24117147-24116879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):26, 109

               
               
               Conread position:37-309
               
               
               Cow position:chr2:34474337-34474077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):28, 152

               
               
               Conread position:38-184
               
               
               Cow position:chr2:27187488-27187642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:38-194
               
               
               Cow position:chr2:7194172-7194332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):25, 77

               
               
               Conread position:38-241
               
               
               Cow position:chr2:38640288-38640492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):55, 19

               
               
               Conread position:39-201
               
               
               Cow position:chr2:62744042-62743878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 23

               
               
               Conread position:40-219
               
               
               Cow position:chr2:45784704-45784886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):52, 22

               
               
               Conread position:40-315
               
               
               Cow position:chr2:50367936-50368217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):12, 26

               
               
               Conread position:41-185
               
               
               Cow position:chr2:19319970-19320114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):72, 44

               
               
               Conread position:41-197
               
               
               Cow position:chr2:76861492-76861329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:41-220
               
               
               Cow position:chr2:23147729-23147540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:42-311
               
               
               Cow position:chr2:44216399-44216665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 145

               
               
               Conread position:43-168
               
               
               Cow position:chr2:37072766-37072895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):19, 98

               
               
               Conread position:44-188
               
               
               Cow position:chr2:24722300-24722153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 13

               
               
               Conread position:44-200
               
               
               Cow position:chr2:63074881-63074727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:44-208
               
               
               Cow position:chr2:29681808-29681965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):61, 48

               
               
               Conread position:44-215
               
               
               Cow position:chr2:12139582-12139405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:45-196
               
               
               Cow position:chr2:71486749-71486904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:45-205
               
               
               Cow position:chr2:41007570-41007404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 141

               
               
               Conread position:45-207
               
               
               Cow position:chr2:10505642-10505477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):34, 79

               
               
               Conread position:45-207
               
               
               Cow position:chr2:16669438-16669604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):19, 124

               
               
               Conread position:45-304
               
               
               Cow position:chr2:83184126-83184374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 19

               
               
               Conread position:45-308
               
               
               Cow position:chr2:64773355-64773605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):7, 149

               
               
               Conread position:46-185
               
               
               Cow position:chr2:50914043-50913901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):13, 62

               
               
               Conread position:46-196
               
               
               Cow position:chr2:16487960-16488116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 11

               
               
               Conread position:46-198
               
               
               Cow position:chr2:32488685-32488538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:46-202
               
               
               Cow position:chr2:21410192-21410352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:46-207
               
               
               Cow position:chr2:32988538-32988704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):33, 13

               
               
               Conread position:46-209
               
               
               Cow position:chr2:1335722-1335558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 16

               
               
               Conread position:46-309
               
               
               Cow position:chr2:45721294-45721028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:47-201
               
               
               Cow position:chr2:46053445-46053601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):46, 8

               
               
               Conread position:48-209
               
               
               Cow position:chr2:29395035-29394872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):21, 9

               
               
               Conread position:50-198
               
               
               Cow position:chr2:23981558-23981711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:50-200
               
               
               Cow position:chr2:53491474-53491319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:50-207
               
               
               Cow position:chr2:44931284-44931124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:51-207
               
               
               Cow position:chr2:52466471-52466315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:51-209
               
               
               Cow position:chr2:30954619-30954459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):30, 21

               
               
               Conread position:51-209
               
               
               Cow position:chr2:50565911-50566071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 143

               
               
               Conread position:53-319
               
               
               Cow position:chr2:38918845-38918586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):40, 113

               
               
               Conread position:57-183
               
               
               Cow position:chr2:81480833-81480959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):22, 53

               
               
               Conread position:57-184
               
               
               Cow position:chr2:22370960-22370832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:57-188
               
               
               Cow position:chr2:59974655-59974521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:57-194
               
               
               Cow position:chr2:21049344-21049206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-196
               
               
               Cow position:chr2:35092710-35092575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):53, 94

               
               
               Conread position:57-198
               
               
               Cow position:chr2:45510576-45510432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:57-201
               
               
               Cow position:chr2:39350510-39350359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:57-201
               
               
               Cow position:chr2:43990755-43990902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):36, 127

               
               
               Conread position:57-201
               
               
               Cow position:chr2:46014749-46014897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-201
               
               
               Cow position:chr2:78360392-78360541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:57-207
               
               
               Cow position:chr2:9543297-9543445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):48, 36

               
               
               Conread position:57-208
               
               
               Cow position:chr2:69109366-69109213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):36, 139

               
               
               Conread position:57-209
               
               
               Cow position:chr2:15219096-15219252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-209
               
               
               Cow position:chr2:39095339-39095491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 113

               
               
               Conread position:57-211
               
               
               Cow position:chr2:16890070-16889918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):36, 122

               
               
               Conread position:57-214
               
               
               Cow position:chr2:60261009-60260847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-215
               
               
               Cow position:chr2:57776330-57776490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):30, 137

               
               
               Conread position:57-227
               
               
               Cow position:chr2:45537203-45537036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):32, 12

               
               
               Conread position:57-304
               
               
               Cow position:chr2:22840220-22839979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):31, 143

               
               
               Conread position:57-311
               
               
               Cow position:chr2:12332513-12332759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):36, 134

               
               
               Conread position:57-311
               
               
               Cow position:chr2:60368299-60368540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):32, 137

               
               
               Conread position:57-312
               
               
               Cow position:chr2:15229508-15229745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):34, 48

               
               
               Conread position:58-207
               
               
               Cow position:chr2:56837672-56837518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:58-215
               
               
               Cow position:chr2:16847168-16847324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):25, 54

               
               
               Conread position:59-207
               
               
               Cow position:chr2:3739860-3739708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:60-207
               
               
               Cow position:chr2:46316858-46317007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:61-207
               
               
               Cow position:chr2:25922397-25922546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:61-213
               
               
               Cow position:chr2:14626579-14626732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):32, 133

               
               
               Conread position:61-309
               
               
               Cow position:chr2:57802502-57802250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):25, 163

               
               
               Conread position:62-195
               
               
               Cow position:chr2:31355685-31355822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr2:46126147-46126002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:62-207
               
               
               Cow position:chr2:38837529-38837380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:62-207
               
               
               Cow position:chr2:49717100-49716952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 99

               
               
               Conread position:62-213
               
               
               Cow position:chr2:46230336-46230184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 64

               
               
               Conread position:62-304
               
               
               Cow position:chr2:20890526-20890267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:65-205
               
               
               Cow position:chr2:74079114-74078978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 36

               
               
               Conread position:68-198
               
               
               Cow position:chr2:40058745-40058611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:68-209
               
               
               Cow position:chr2:39419096-39418950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:70-214
               
               
               Cow position:chr2:38953819-38953968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:74-185
               
               
               Cow position:chr2:40431799-40431686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:75-311
               
               
               Cow position:chr2:44021743-44021987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):18, 61

               
               
               Conread position:76-201
               
               
               Cow position:chr2:39363004-39363133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:76-209
               
               
               Cow position:chr2:39642754-39642888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):11, 106

               
               
               Conread position:76-209
               
               
               Cow position:chr2:46300615-46300750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:78-190
               
               
               Cow position:chr2:43975822-43975708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:78-207
               
               
               Cow position:chr2:36117255-36117386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:79-201
               
               
               Cow position:chr2:13468222-13468344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):8, 88

               
               
               Conread position:79-209
               
               
               Cow position:chr2:64473342-64473215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):8, 30

               
               
               Conread position:79-215
               
               
               Cow position:chr2:26361761-26361898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):8, 105

               
               
               Conread position:79-311
               
               
               Cow position:chr2:67942099-67942321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):8, 103

               
               
               Conread position:79-312
               
               
               Cow position:chr2:7478934-7478701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):8, 50

               
               
               Conread position:79-319
               
               
               Cow position:chr2:2689760-2690008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:187
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):8, 167

               
               
               Conread position:80-284
               
               
               Cow position:chr2:44032393-44032192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):13, 25

               
               
               Conread position:80-311
               
               
               Cow position:chr2:41385883-41385646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):7, 30

               
               
               Conread position:81-201
               
               
               Cow position:chr2:30788687-30788808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:81-208
               
               
               Cow position:chr2:37652257-37652386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:82-204
               
               
               Cow position:chr2:32840602-32840477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:82-208
               
               
               Cow position:chr2:35023838-35023963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):5, 102

               
               
               Conread position:82-227
               
               
               Cow position:chr2:80838900-80838759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):28, 7

               
               
               Conread position:82-310
               
               
               Cow position:chr2:69771126-69771340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):5, 54

               
               
               Conread position:83-195
               
               
               Cow position:chr2:78379410-78379293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:84-312
               
               
               Cow position:chr2:59527482-59527706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):13, 98

               
               
               Conread position:85-194
               
               
               Cow position:chr2:21373219-21373330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 19

               
               
               Conread position:86-194
               
               
               Cow position:chr2:39525477-39525586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-195
               
               
               Cow position:chr2:39242370-39242480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:86-201
               
               
               Cow position:chr2:21171619-21171734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 77

               
               
               Conread position:86-201
               
               
               Cow position:chr2:37224085-37224200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 95

               
               
               Conread position:86-209
               
               
               Cow position:chr2:38950106-38949982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:86-215
               
               
               Cow position:chr2:38576465-38576333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-301
               
               
               Cow position:chr2:75190682-75190883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):153, 23

               
               
               Conread position:86-304
               
               
               Cow position:chr2:19031124-19030891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-308
               
               
               Cow position:chr2:46190245-46190458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):25, 105

               
               
               Conread position:86-308
               
               
               Cow position:chr2:52398331-52398535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):25, 96

               
               
               Conread position:87-201
               
               
               Cow position:chr2:485592-485707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:87-201
               
               
               Cow position:chr2:64465760-64465645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:87-304
               
               
               Cow position:chr2:35902784-35902997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):24, 112

               
               
               Conread position:88-201
               
               
               Cow position:chr2:21949992-21950106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:88-209
               
               
               Cow position:chr2:78669908-78669788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 33

               
               
               Conread position:92-214
               
               
               Cow position:chr2:46111034-46110910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:93-189
               
               
               Cow position:chr2:38619414-38619317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:83
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:93-197
               
               
               Cow position:chr2:5815997-5815892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:93-207
               
               
               Cow position:chr2:53575966-53575852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):17, 25

               
               
               Conread position:93-304
               
               
               Cow position:chr2:46361347-46361140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 122

               
               
               Conread position:94-209
               
               
               Cow position:chr2:23301754-23301869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 102

               
               
               Conread position:96-304
               
               
               Cow position:chr2:16387627-16387835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):116, 13

               
               
               Conread position:100-189
               
               
               Cow position:chr2:44023062-44022973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:90
               
               
               Alignm identity:78
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:100-312
               
               
               Cow position:chr2:45470304-45470513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):10, 81

               
               
               Conread position:109-207
               
               
               Cow position:chr2:30127251-30127154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:111-301
               
               
               Cow position:chr2:748329-748146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):100, 69

               
               
               Conread position:111-304
               
               
               Cow position:chr2:22838203-22838017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):131, 88

               
               
               Conread position:119-310
               
               
               Cow position:chr2:32972677-32972864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:119-310
               
               
               Cow position:chr2:67311074-67310866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):65, 161

               
               
               Conread position:122-311
               
               
               Cow position:chr2:41213486-41213313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:127-311
               
               
               Cow position:chr2:46021174-46021349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:129-296
               
               
               Cow position:chr2:39600751-39600596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:130-308
               
               
               Cow position:chr2:36292-36120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):53, 62

               
               
               Conread position:134-299
               
               
               Cow position:chr2:13055105-13055280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):76, 57

               
               
               Conread position:187-311
               
               
               Cow position:chr2:61406179-61406054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:192-313
               
               
               Cow position:chr2:45466400-45466521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:194-321
               
               
               Cow position:chr2:41525699-41525570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):47, 112

               
               
               Conread position:1-188
               
               
               Cow position:chr20:9412447-9412648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:1-188
               
               
               Cow position:chr20:42469720-42469919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):20, 127

               
               
               Conread position:1-190
               
               
               Cow position:chr20:4332097-4332296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):56, 37

               
               
               Conread position:1-192
               
               
               Cow position:chr20:26077699-26077504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1-195
               
               
               Cow position:chr20:4334566-4334362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:1-195
               
               
               Cow position:chr20:13752198-13752391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):21, 44

               
               
               Conread position:1-196
               
               
               Cow position:chr20:11008129-11008338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:1-200
               
               
               Cow position:chr20:13025651-13025440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):21, 193

               
               
               Conread position:1-201
               
               
               Cow position:chr20:3255006-3255210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):18, 41

               
               
               Conread position:1-201
               
               
               Cow position:chr20:6248637-6248428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:1-201
               
               
               Cow position:chr20:40446297-40446501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):42, 184

               
               
               Conread position:1-202
               
               
               Cow position:chr20:10818269-10818069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):87, 34

               
               
               Conread position:1-202
               
               
               Cow position:chr20:16941324-16941114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:1-202
               
               
               Cow position:chr20:19751272-19751481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:1-216
               
               
               Cow position:chr20:9267141-9266921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):48, 143

               
               
               Conread position:1-221
               
               
               Cow position:chr20:38578801-38578571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):14, 39

               
               
               Conread position:1-229
               
               
               Cow position:chr20:21928870-21929105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):24, 39

               
               
               Conread position:1-264
               
               
               Cow position:chr20:13983321-13983591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):54, 37

               
               
               Conread position:1-299
               
               
               Cow position:chr20:33439017-33438719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 46

               
               
               Conread position:1-312
               
               
               Cow position:chr20:9537095-9537419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 105

               
               
               Conread position:3-184
               
               
               Cow position:chr20:31323756-31323943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):59, 23

               
               
               Conread position:3-198
               
               
               Cow position:chr20:13652398-13652197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:3-201
               
               
               Cow position:chr20:20967287-20967494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:3-204
               
               
               Cow position:chr20:7756658-7756450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 64

               
               
               Conread position:3-308
               
               
               Cow position:chr20:20242057-20242355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 37

               
               
               Conread position:4-185
               
               
               Cow position:chr20:23541187-23541003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):42, 110

               
               
               Conread position:4-201
               
               
               Cow position:chr20:34097988-34097780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:4-209
               
               
               Cow position:chr20:29805692-29805478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):45, 130

               
               
               Conread position:5-157
               
               
               Cow position:chr20:34001422-34001261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):43, 144

               
               
               Conread position:5-172
               
               
               Cow position:chr20:6423942-6424112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):46, 102

               
               
               Conread position:5-175
               
               
               Cow position:chr20:25162158-25161978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:5-176
               
               
               Cow position:chr20:11548751-11548576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:5-179
               
               
               Cow position:chr20:14759690-14759514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):50, 37

               
               
               Conread position:5-183
               
               
               Cow position:chr20:9433556-9433742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):41, 159

               
               
               Conread position:5-184
               
               
               Cow position:chr20:11359659-11359476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-187
               
               
               Cow position:chr20:15565855-15565670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):47, 127

               
               
               Conread position:5-187
               
               
               Cow position:chr20:16492042-16492232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:5-187
               
               
               Cow position:chr20:20983967-20984151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):89, 38

               
               
               Conread position:5-188
               
               
               Cow position:chr20:39398456-39398641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):98, 33

               
               
               Conread position:5-188
               
               
               Cow position:chr20:40127365-40127183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):74, 41

               
               
               Conread position:5-189
               
               
               Cow position:chr20:33144582-33144392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr20:35907081-35906889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):90, 38

               
               
               Conread position:5-189
               
               
               Cow position:chr20:42197290-42197474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):80, 38

               
               
               Conread position:5-192
               
               
               Cow position:chr20:40511788-40511593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):38, 159

               
               
               Conread position:5-197
               
               
               Cow position:chr20:7426224-7426028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 58

               
               
               Conread position:5-197
               
               
               Cow position:chr20:11188828-11188638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):53, 45

               
               
               Conread position:5-198
               
               
               Cow position:chr20:7442157-7441968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):50, 38

               
               
               Conread position:5-198
               
               
               Cow position:chr20:10188244-10188446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):49, 140

               
               
               Conread position:5-198
               
               
               Cow position:chr20:11038560-11038746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):110, 21

               
               
               Conread position:5-198
               
               
               Cow position:chr20:15568975-15568779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):55, 25

               
               
               Conread position:5-198
               
               
               Cow position:chr20:22484833-22485031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:5-200
               
               
               Cow position:chr20:6603010-6603212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):45, 183

               
               
               Conread position:5-201
               
               
               Cow position:chr20:3599424-3599225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):41, 90

               
               
               Conread position:5-201
               
               
               Cow position:chr20:5814539-5814739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:5-201
               
               
               Cow position:chr20:13023523-13023328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:5-201
               
               
               Cow position:chr20:14433456-14433250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):37, 171

               
               
               Conread position:5-201
               
               
               Cow position:chr20:21428130-21428332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):50, 38

               
               
               Conread position:5-201
               
               
               Cow position:chr20:29845020-29845223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):40, 168

               
               
               Conread position:5-204
               
               
               Cow position:chr20:7738256-7738055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):88, 50

               
               
               Conread position:5-204
               
               
               Cow position:chr20:35192748-35192939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:5-205
               
               
               Cow position:chr20:6240551-6240344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):43, 137

               
               
               Conread position:5-206
               
               
               Cow position:chr20:354926-354723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):48, 91

               
               
               Conread position:5-207
               
               
               Cow position:chr20:4945276-4945074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):88, 23

               
               
               Conread position:5-207
               
               
               Cow position:chr20:10200313-10200525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr20:15118249-15118454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):83, 162

               
               
               Conread position:5-207
               
               
               Cow position:chr20:38089882-38090092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):49, 33

               
               
               Conread position:5-207
               
               
               Cow position:chr20:39016906-39016693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr20:39962546-39962754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):49, 37

               
               
               Conread position:5-207
               
               
               Cow position:chr20:40781938-40782143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):88, 30

               
               
               Conread position:5-208
               
               
               Cow position:chr20:20099626-20099421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):15, 37

               
               
               Conread position:5-209
               
               
               Cow position:chr20:34221451-34221658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):16, 162

               
               
               Conread position:5-209
               
               
               Cow position:chr20:38847261-38847051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):86, 32

               
               
               Conread position:5-215
               
               
               Cow position:chr20:12085454-12085250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):88, 36

               
               
               Conread position:5-215
               
               
               Cow position:chr20:21345398-21345620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:5-219
               
               
               Cow position:chr20:19328372-19328579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:5-221
               
               
               Cow position:chr20:18392290-18392080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):82, 51

               
               
               Conread position:5-221
               
               
               Cow position:chr20:23506499-23506282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):57, 161

               
               
               Conread position:5-222
               
               
               Cow position:chr20:6238667-6238445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 205

               
               
               Conread position:5-223
               
               
               Cow position:chr20:21761743-21761968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 177

               
               
               Conread position:5-226
               
               
               Cow position:chr20:3321171-3320949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 93

               
               
               Conread position:5-227
               
               
               Cow position:chr20:28067456-28067228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):23, 11

               
               
               Conread position:5-239
               
               
               Cow position:chr20:33532276-33532512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):56, 38

               
               
               Conread position:5-242
               
               
               Cow position:chr20:5636454-5636699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):52, 29

               
               
               Conread position:5-267
               
               
               Cow position:chr20:34108082-34108343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:5-272
               
               
               Cow position:chr20:23064860-23064604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):46, 108

               
               
               Conread position:5-287
               
               
               Cow position:chr20:16548307-16548016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):41, 193

               
               
               Conread position:5-292
               
               
               Cow position:chr20:39266988-39266706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:5-304
               
               
               Cow position:chr20:6890685-6890985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 45

               
               
               Conread position:5-304
               
               
               Cow position:chr20:9923553-9923833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-310
               
               
               Cow position:chr20:36633789-36634082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 101

               
               
               Conread position:5-310
               
               
               Cow position:chr20:40157871-40158167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 192

               
               
               Conread position:5-311
               
               
               Cow position:chr20:5826911-5827212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:5-311
               
               
               Cow position:chr20:7709815-7709501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 198

               
               
               Conread position:5-311
               
               
               Cow position:chr20:12996040-12995744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):42, 139

               
               
               Conread position:5-311
               
               
               Cow position:chr20:34777150-34777476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:234
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):54, 290

               
               
               Conread position:6-195
               
               
               Cow position:chr20:11135791-11135586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:7-189
               
               
               Cow position:chr20:1576065-1576257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 184

               
               
               Conread position:7-198
               
               
               Cow position:chr20:9376441-9376638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):48, 180

               
               
               Conread position:7-201
               
               
               Cow position:chr20:41089822-41089622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):44, 30

               
               
               Conread position:7-207
               
               
               Cow position:chr20:6054543-6054330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:7-293
               
               
               Cow position:chr20:10772176-10772462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:215
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):39, 187

               
               
               Conread position:7-300
               
               
               Cow position:chr20:21714728-21715027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):52, 156

               
               
               Conread position:8-188
               
               
               Cow position:chr20:21786343-21786165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):14, 30

               
               
               Conread position:12-201
               
               
               Cow position:chr20:12581981-12581782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 28

               
               
               Conread position:12-201
               
               
               Cow position:chr20:32463546-32463351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 28

               
               
               Conread position:13-198
               
               
               Cow position:chr20:39417919-39417733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):9, 48

               
               
               Conread position:13-219
               
               
               Cow position:chr20:311310-311510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):80, 37

               
               
               Conread position:13-222
               
               
               Cow position:chr20:6903291-6903507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):6, 180

               
               
               Conread position:15-189
               
               
               Cow position:chr20:35741745-35741929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:15-207
               
               
               Cow position:chr20:12534761-12534561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:15-218
               
               
               Cow position:chr20:38514762-38514968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):38, 48

               
               
               Conread position:15-307
               
               
               Cow position:chr20:580943-580652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):32, 182

               
               
               Conread position:17-201
               
               
               Cow position:chr20:21372289-21372481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:17-207
               
               
               Cow position:chr20:13876722-13876532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):32, 81

               
               
               Conread position:17-310
               
               
               Cow position:chr20:23870838-23870548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 182

               
               
               Conread position:19-186
               
               
               Cow position:chr20:6372576-6372405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 19

               
               
               Conread position:19-207
               
               
               Cow position:chr20:25953251-25953443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):29, 46

               
               
               Conread position:19-291
               
               
               Cow position:chr20:17845942-17846229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:20-166
               
               
               Cow position:chr20:17765343-17765194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):38, 22

               
               
               Conread position:20-182
               
               
               Cow position:chr20:34846849-34846683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):26, 45

               
               
               Conread position:20-187
               
               
               Cow position:chr20:40423117-40422943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 54

               
               
               Conread position:20-188
               
               
               Cow position:chr20:17251701-17251877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-189
               
               
               Cow position:chr20:6096508-6096334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):31, 18

               
               
               Conread position:20-192
               
               
               Cow position:chr20:34083705-34083879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):68, 147

               
               
               Conread position:20-196
               
               
               Cow position:chr20:3141561-3141741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):37, 14

               
               
               Conread position:20-196
               
               
               Cow position:chr20:23850606-23850788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:20-196
               
               
               Cow position:chr20:42458864-42458688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):59, 24

               
               
               Conread position:20-197
               
               
               Cow position:chr20:4755846-4755664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:20-201
               
               
               Cow position:chr20:14980527-14980333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):29, 161

               
               
               Conread position:20-206
               
               
               Cow position:chr20:14564039-14564227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):32, 18

               
               
               Conread position:20-206
               
               
               Cow position:chr20:16291679-16291866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):58, 30

               
               
               Conread position:20-207
               
               
               Cow position:chr20:12126319-12126125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr20:22959358-22959169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):73, 52

               
               
               Conread position:20-207
               
               
               Cow position:chr20:33067380-33067183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):28, 172

               
               
               Conread position:20-207
               
               
               Cow position:chr20:36741461-36741640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 84

               
               
               Conread position:20-209
               
               
               Cow position:chr20:28594268-28594470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):32, 23

               
               
               Conread position:20-216
               
               
               Cow position:chr20:5078609-5078814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):31, 23

               
               
               Conread position:20-222
               
               
               Cow position:chr20:39728434-39728644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):34, 130

               
               
               Conread position:20-223
               
               
               Cow position:chr20:35460556-35460339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:20-228
               
               
               Cow position:chr20:38551359-38551565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:20-237
               
               
               Cow position:chr20:14100448-14100220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:20-300
               
               
               Cow position:chr20:20739301-20739036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):28, 177

               
               
               Conread position:20-301
               
               
               Cow position:chr20:20056499-20056216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 23

               
               
               Conread position:21-201
               
               
               Cow position:chr20:20934752-20934560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):25, 172

               
               
               Conread position:21-207
               
               
               Cow position:chr20:29990456-29990269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):69, 17

               
               
               Conread position:22-196
               
               
               Cow position:chr20:19237065-19237243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:22-217
               
               
               Cow position:chr20:39517994-39518193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):29, 142

               
               
               Conread position:23-204
               
               
               Cow position:chr20:18831887-18831702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:23-207
               
               
               Cow position:chr20:5950653-5950464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 23

               
               
               Conread position:23-223
               
               
               Cow position:chr20:11043489-11043279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):15, 97

               
               
               Conread position:25-196
               
               
               Cow position:chr20:39415743-39415918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:25-277
               
               
               Cow position:chr20:2169733-2169476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):30, 52

               
               
               Conread position:26-179
               
               
               Cow position:chr20:36040463-36040626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:26-204
               
               
               Cow position:chr20:1824641-1824452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:28-201
               
               
               Cow position:chr20:5702716-5702897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:30-187
               
               
               Cow position:chr20:361190-361031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):20, 91

               
               
               Conread position:33-304
               
               
               Cow position:chr20:33820455-33820713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 136

               
               
               Conread position:34-189
               
               
               Cow position:chr20:2743137-2742977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):28, 19

               
               
               Conread position:35-207
               
               
               Cow position:chr20:24711843-24712020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:37-217
               
               
               Cow position:chr20:35591645-35591462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 148

               
               
               Conread position:38-291
               
               
               Cow position:chr20:15589045-15589294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):10, 180

               
               
               Conread position:39-208
               
               
               Cow position:chr20:14490259-14490426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):54, 17

               
               
               Conread position:40-204
               
               
               Cow position:chr20:10246044-10245877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):47, 10

               
               
               Conread position:41-209
               
               
               Cow position:chr20:15529870-15530039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):52, 83

               
               
               Conread position:41-216
               
               
               Cow position:chr20:35208197-35208017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:44-175
               
               
               Cow position:chr20:8817478-8817344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):33, 18

               
               
               Conread position:45-196
               
               
               Cow position:chr20:14917298-14917453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:45-197
               
               
               Cow position:chr20:23678704-23678546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:45-206
               
               
               Cow position:chr20:23590733-23590571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):48, 12

               
               
               Conread position:46-189
               
               
               Cow position:chr20:4002106-4002254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):8, 135

               
               
               Conread position:46-200
               
               
               Cow position:chr20:37919356-37919194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:46-220
               
               
               Cow position:chr20:22030337-22030506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:48-215
               
               
               Cow position:chr20:17388545-17388717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 80

               
               
               Conread position:49-201
               
               
               Cow position:chr20:5364947-5365099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):42, 56

               
               
               Conread position:50-198
               
               
               Cow position:chr20:20158155-20158306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:50-207
               
               
               Cow position:chr20:14282938-14283099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:50-207
               
               
               Cow position:chr20:40303865-40303706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 43

               
               
               Conread position:50-209
               
               
               Cow position:chr20:21815580-21815742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:50-212
               
               
               Cow position:chr20:34202652-34202819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:52-292
               
               
               Cow position:chr20:34835690-34835457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:57-189
               
               
               Cow position:chr20:5703496-5703633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-201
               
               
               Cow position:chr20:35727905-35727757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:57-209
               
               
               Cow position:chr20:7417142-7416984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-304
               
               
               Cow position:chr20:31799178-31798922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:57-305
               
               
               Cow position:chr20:13943790-13944043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):155, 36

               
               
               Conread position:59-198
               
               
               Cow position:chr20:25021455-25021598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):36, 79

               
               
               Conread position:59-198
               
               
               Cow position:chr20:30744694-30744552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):31, 134

               
               
               Conread position:63-214
               
               
               Cow position:chr20:17370220-17370068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 63

               
               
               Conread position:65-213
               
               
               Cow position:chr20:21291693-21291843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):21, 129

               
               
               Conread position:65-248
               
               
               Cow position:chr20:11444112-11444297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):14, 44

               
               
               Conread position:68-209
               
               
               Cow position:chr20:23936148-23936004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):25, 73

               
               
               Conread position:71-214
               
               
               Cow position:chr20:36671393-36671245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 95

               
               
               Conread position:72-202
               
               
               Cow position:chr20:27315022-27315151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 33

               
               
               Conread position:76-172
               
               
               Cow position:chr20:15488750-15488850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:87
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:78-204
               
               
               Cow position:chr20:2316377-2316249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:78-204
               
               
               Cow position:chr20:31845237-31845109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:79-201
               
               
               Cow position:chr20:35442233-35442109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-204
               
               
               Cow position:chr20:37273047-37273172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):8, 99

               
               
               Conread position:79-205
               
               
               Cow position:chr20:24002648-24002778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:79-209
               
               
               Cow position:chr20:2148143-2148012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):8, 54

               
               
               Conread position:80-256
               
               
               Cow position:chr20:7622933-7622760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):14, 58

               
               
               Conread position:82-201
               
               
               Cow position:chr20:37357910-37358029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):28, 7

               
               
               Conread position:83-305
               
               
               Cow position:chr20:30027403-30027617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):27, 17

               
               
               Conread position:86-207
               
               
               Cow position:chr20:17544682-17544803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):24, 7

               
               
               Conread position:86-209
               
               
               Cow position:chr20:13617283-13617408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:86-212
               
               
               Cow position:chr20:8021183-8021308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):24, 105

               
               
               Conread position:86-213
               
               
               Cow position:chr20:2822927-2823055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-237
               
               
               Cow position:chr20:35211203-35211052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:86-301
               
               
               Cow position:chr20:3781148-3780938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 126

               
               
               Conread position:86-310
               
               
               Cow position:chr20:15846812-15847030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):25, 106

               
               
               Conread position:87-213
               
               
               Cow position:chr20:40692122-40692247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 94

               
               
               Conread position:89-209
               
               
               Cow position:chr20:5078332-5078454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:89-234
               
               
               Cow position:chr20:41274838-41274692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):21, 103

               
               
               Conread position:91-189
               
               
               Cow position:chr20:6848957-6849055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):19, 90

               
               
               Conread position:93-204
               
               
               Cow position:chr20:34847970-34848082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:93-216
               
               
               Cow position:chr20:15515376-15515252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:94-311
               
               
               Cow position:chr20:15547255-15547467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):16, 97

               
               
               Conread position:95-230
               
               
               Cow position:chr20:26059164-26059026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:95-304
               
               
               Cow position:chr20:37229018-37228825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):15, 86

               
               
               Conread position:104-308
               
               
               Cow position:chr20:36023324-36023111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:108-308
               
               
               Cow position:chr20:24522377-24522590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:109-315
               
               
               Cow position:chr20:3588718-3588912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):16, 79

               
               
               Conread position:114-304
               
               
               Cow position:chr20:32627094-32627288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):79, 33

               
               
               Conread position:122-315
               
               
               Cow position:chr20:18100677-18100881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:192-307
               
               
               Cow position:chr20:7291729-7291615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):20, 8

               
               
               Conread position:1-182
               
               
               Cow position:chr21:44861126-44860944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 111

               
               
               Conread position:1-184
               
               
               Cow position:chr21:5898420-5898225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):18, 48

               
               
               Conread position:1-184
               
               
               Cow position:chr21:9334471-9334664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr21:5970851-5970659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:1-189
               
               
               Cow position:chr21:13395583-13395780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):86, 49

               
               
               Conread position:1-195
               
               
               Cow position:chr21:38720231-38720435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):18, 146

               
               
               Conread position:1-197
               
               
               Cow position:chr21:45473767-45473567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):92, 56

               
               
               Conread position:1-198
               
               
               Cow position:chr21:25344851-25345052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):37, 59

               
               
               Conread position:1-198
               
               
               Cow position:chr21:28989593-28989803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):21, 139

               
               
               Conread position:1-201
               
               
               Cow position:chr21:3585382-3585173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-201
               
               
               Cow position:chr21:4281892-4281686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):18, 160

               
               
               Conread position:1-201
               
               
               Cow position:chr21:6051486-6051699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:1-201
               
               
               Cow position:chr21:42007478-42007268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:1-201
               
               
               Cow position:chr21:44251856-44251649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:1-206
               
               
               Cow position:chr21:10978953-10978750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):79, 18

               
               
               Conread position:1-206
               
               
               Cow position:chr21:21686404-21686614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):39, 155

               
               
               Conread position:1-206
               
               
               Cow position:chr21:36696103-36695891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr21:16604333-16604117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr21:30231712-30231499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 159

               
               
               Conread position:1-208
               
               
               Cow position:chr21:44214109-44214328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:1-209
               
               
               Cow position:chr21:868946-868722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):18, 195

               
               
               Conread position:1-209
               
               
               Cow position:chr21:33562993-33563203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):14, 71

               
               
               Conread position:1-215
               
               
               Cow position:chr21:44825906-44825677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-223
               
               
               Cow position:chr21:22718799-22718567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):21, 38

               
               
               Conread position:1-231
               
               
               Cow position:chr21:26648024-26647793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):47, 98

               
               
               Conread position:1-232
               
               
               Cow position:chr21:10538265-10538028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:181
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):57, 42

               
               
               Conread position:1-234
               
               
               Cow position:chr21:27624694-27624926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 36

               
               
               Conread position:1-237
               
               
               Cow position:chr21:47363753-47363508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):21, 192

               
               
               Conread position:1-259
               
               
               Cow position:chr21:734575-734843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):16, 94

               
               
               Conread position:1-296
               
               
               Cow position:chr21:26244905-26245185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):85, 37

               
               
               Conread position:1-304
               
               
               Cow position:chr21:33350725-33351034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):23, 249

               
               
               Conread position:1-307
               
               
               Cow position:chr21:40432435-40432730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):21, 57

               
               
               Conread position:1-308
               
               
               Cow position:chr21:30256285-30255990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 134

               
               
               Conread position:1-310
               
               
               Cow position:chr21:28924095-28924393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):21, 188

               
               
               Conread position:1-311
               
               
               Cow position:chr21:46132563-46132862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):57, 7

               
               
               Conread position:2-197
               
               
               Cow position:chr21:42022262-42022463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):17, 183

               
               
               Conread position:3-196
               
               
               Cow position:chr21:11779544-11779352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):25, 49

               
               
               Conread position:3-196
               
               
               Cow position:chr21:44565733-44565533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):19, 110

               
               
               Conread position:3-201
               
               
               Cow position:chr21:41579741-41579950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):34, 162

               
               
               Conread position:3-307
               
               
               Cow position:chr21:27569184-27568893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):22, 97

               
               
               Conread position:4-186
               
               
               Cow position:chr21:17062919-17063101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):89, 46

               
               
               Conread position:5-165
               
               
               Cow position:chr21:41878462-41878627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):53, 132

               
               
               Conread position:5-173
               
               
               Cow position:chr21:36789782-36789962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-176
               
               
               Cow position:chr21:13036909-13036737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 89

               
               
               Conread position:5-176
               
               
               Cow position:chr21:21907438-21907265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):58, 102

               
               
               Conread position:5-176
               
               
               Cow position:chr21:45915719-45915549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):87, 52

               
               
               Conread position:5-179
               
               
               Cow position:chr21:8235563-8235390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:5-182
               
               
               Cow position:chr21:42414110-42413922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr21:5426932-5427114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):45, 152

               
               
               Conread position:5-188
               
               
               Cow position:chr21:10001066-10001256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):52, 45

               
               
               Conread position:5-188
               
               
               Cow position:chr21:30835354-30835544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-188
               
               
               Cow position:chr21:34654067-34654254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 18

               
               
               Conread position:5-188
               
               
               Cow position:chr21:40589494-40589301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):16, 12

               
               
               Conread position:5-188
               
               
               Cow position:chr21:42209640-42209448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr21:6387991-6388181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):25, 158

               
               
               Conread position:5-189
               
               
               Cow position:chr21:9416239-9416431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):50, 178

               
               
               Conread position:5-189
               
               
               Cow position:chr21:29069338-29069144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:5-193
               
               
               Cow position:chr21:20152945-20153140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):43, 164

               
               
               Conread position:5-194
               
               
               Cow position:chr21:18064923-18064731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):58, 143

               
               
               Conread position:5-195
               
               
               Cow position:chr21:38900769-38900960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):46, 20

               
               
               Conread position:5-196
               
               
               Cow position:chr21:977154-976952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:5-196
               
               
               Cow position:chr21:8426437-8426634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):50, 33

               
               
               Conread position:5-196
               
               
               Cow position:chr21:10823558-10823748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):50, 75

               
               
               Conread position:5-196
               
               
               Cow position:chr21:22210253-22210060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):43, 177

               
               
               Conread position:5-196
               
               
               Cow position:chr21:38449456-38449260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):46, 93

               
               
               Conread position:5-196
               
               
               Cow position:chr21:47760760-47760957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):44, 32

               
               
               Conread position:5-197
               
               
               Cow position:chr21:5464738-5464938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):41, 180

               
               
               Conread position:5-197
               
               
               Cow position:chr21:15976624-15976822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:162
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):41, 139

               
               
               Conread position:5-197
               
               
               Cow position:chr21:46849136-46848938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-197
               
               
               Cow position:chr21:47465130-47464930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):44, 139

               
               
               Conread position:5-198
               
               
               Cow position:chr21:957663-957861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):58, 160

               
               
               Conread position:5-198
               
               
               Cow position:chr21:1511282-1511480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):23, 105

               
               
               Conread position:5-198
               
               
               Cow position:chr21:6997931-6998139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):47, 38

               
               
               Conread position:5-198
               
               
               Cow position:chr21:10118550-10118755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):16, 10

               
               
               Conread position:5-198
               
               
               Cow position:chr21:19060096-19059899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr21:23586871-23587072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):43, 164

               
               
               Conread position:5-198
               
               
               Cow position:chr21:25628919-25628721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):35, 154

               
               
               Conread position:5-198
               
               
               Cow position:chr21:29978769-29978568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr21:33982815-33982618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):44, 109

               
               
               Conread position:5-199
               
               
               Cow position:chr21:15544227-15544040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):45, 75

               
               
               Conread position:5-200
               
               
               Cow position:chr21:29014922-29014717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):53, 32

               
               
               Conread position:5-201
               
               
               Cow position:chr21:641577-641781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr21:802316-802123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):88, 37

               
               
               Conread position:5-201
               
               
               Cow position:chr21:11644979-11644771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr21:13585063-13584867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):82, 38

               
               
               Conread position:5-201
               
               
               Cow position:chr21:27521340-27521146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):82, 14

               
               
               Conread position:5-201
               
               
               Cow position:chr21:28030279-28030482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:5-202
               
               
               Cow position:chr21:4399794-4399998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):48, 71

               
               
               Conread position:5-202
               
               
               Cow position:chr21:17890294-17890499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):55, 38

               
               
               Conread position:5-204
               
               
               Cow position:chr21:7768425-7768635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-204
               
               
               Cow position:chr21:8349319-8349525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:5-204
               
               
               Cow position:chr21:30222334-30222542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:5-205
               
               
               Cow position:chr21:28733923-28733715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-206
               
               
               Cow position:chr21:17875200-17874994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-206
               
               
               Cow position:chr21:21169501-21169297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):54, 103

               
               
               Conread position:5-207
               
               
               Cow position:chr21:3177844-3178046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):16, 33

               
               
               Conread position:5-207
               
               
               Cow position:chr21:10004896-10004686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):50, 121

               
               
               Conread position:5-207
               
               
               Cow position:chr21:10264023-10264232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):51, 38

               
               
               Conread position:5-207
               
               
               Cow position:chr21:23672741-23672943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):45, 90

               
               
               Conread position:5-207
               
               
               Cow position:chr21:32339746-32339540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr21:38918194-38918399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):50, 32

               
               
               Conread position:5-207
               
               
               Cow position:chr21:41621115-41621325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:5-207
               
               
               Cow position:chr21:47714014-47713809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:5-208
               
               
               Cow position:chr21:10410211-10410423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):43, 120

               
               
               Conread position:5-209
               
               
               Cow position:chr21:19513856-19514056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 62

               
               
               Conread position:5-209
               
               
               Cow position:chr21:42841609-42841395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:5-213
               
               
               Cow position:chr21:18790568-18790360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 76

               
               
               Conread position:5-214
               
               
               Cow position:chr21:28237721-28237501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):53, 127

               
               
               Conread position:5-215
               
               
               Cow position:chr21:13089479-13089266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:5-215
               
               
               Cow position:chr21:47764124-47763912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):48, 38

               
               
               Conread position:5-218
               
               
               Cow position:chr21:10633649-10633432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):52, 113

               
               
               Conread position:5-219
               
               
               Cow position:chr21:41974384-41974170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):57, 104

               
               
               Conread position:5-221
               
               
               Cow position:chr21:15911391-15911612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):45, 113

               
               
               Conread position:5-229
               
               
               Cow position:chr21:42135629-42135395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):56, 220

               
               
               Conread position:5-230
               
               
               Cow position:chr21:37345106-37344876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):47, 68

               
               
               Conread position:5-231
               
               
               Cow position:chr21:12801761-12801525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):38, 184

               
               
               Conread position:5-237
               
               
               Cow position:chr21:395861-396099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-301
               
               
               Cow position:chr21:36795591-36795884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:224
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):48, 219

               
               
               Conread position:5-304
               
               
               Cow position:chr21:30250205-30249914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):88, 41

               
               
               Conread position:5-304
               
               
               Cow position:chr21:36909926-36910214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:223
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):44, 53

               
               
               Conread position:5-304
               
               
               Cow position:chr21:39401585-39401906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:5-307
               
               
               Cow position:chr21:30980587-30980293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):36, 193

               
               
               Conread position:5-309
               
               
               Cow position:chr21:44671742-44672042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):86, 38

               
               
               Conread position:5-311
               
               
               Cow position:chr21:13365329-13365635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):17, 198

               
               
               Conread position:6-189
               
               
               Cow position:chr21:41046796-41046988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:6-215
               
               
               Cow position:chr21:29405223-29405017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):77, 37

               
               
               Conread position:6-226
               
               
               Cow position:chr21:471669-471891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):49, 37

               
               
               Conread position:6-227
               
               
               Cow position:chr21:7394374-7394594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:6-270
               
               
               Cow position:chr21:18940584-18940316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):23, 108

               
               
               Conread position:7-177
               
               
               Cow position:chr21:31253537-31253703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):86, 37

               
               
               Conread position:7-186
               
               
               Cow position:chr21:15584427-15584240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:7-196
               
               
               Cow position:chr21:20160671-20160865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:156
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:7-196
               
               
               Cow position:chr21:28919531-28919339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):42, 140

               
               
               Conread position:7-196
               
               
               Cow position:chr21:41597814-41598000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):86, 39

               
               
               Conread position:7-201
               
               
               Cow position:chr21:30607096-30606901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):42, 153

               
               
               Conread position:7-207
               
               
               Cow position:chr21:40266117-40266321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):39, 102

               
               
               Conread position:7-212
               
               
               Cow position:chr21:10114340-10114129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):51, 101

               
               
               Conread position:7-244
               
               
               Cow position:chr21:2657799-2658047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):15, 62

               
               
               Conread position:8-198
               
               
               Cow position:chr21:14760566-14760756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):44, 76

               
               
               Conread position:11-196
               
               
               Cow position:chr21:24797660-24797843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):82, 33

               
               
               Conread position:11-206
               
               
               Cow position:chr21:13842483-13842689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:12-189
               
               
               Cow position:chr21:32559365-32559183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):12, 50

               
               
               Conread position:12-198
               
               
               Cow position:chr21:9990506-9990701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):10, 36

               
               
               Conread position:12-201
               
               
               Cow position:chr21:3361017-3360821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):10, 70

               
               
               Conread position:12-201
               
               
               Cow position:chr21:8431104-8430906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):41, 25

               
               
               Conread position:12-223
               
               
               Cow position:chr21:7686793-7686596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):9, 39

               
               
               Conread position:12-293
               
               
               Cow position:chr21:1764866-1764606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):76, 98

               
               
               Conread position:13-188
               
               
               Cow position:chr21:28810264-28810081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):42, 30

               
               
               Conread position:13-189
               
               
               Cow position:chr21:5153625-5153802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):9, 35

               
               
               Conread position:13-201
               
               
               Cow position:chr21:643321-643518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:13-207
               
               
               Cow position:chr21:37299455-37299662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:14-201
               
               
               Cow position:chr21:23535711-23535903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:14-207
               
               
               Cow position:chr21:71583-71783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):8, 146

               
               
               Conread position:15-187
               
               
               Cow position:chr21:21077609-21077780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):75, 22

               
               
               Conread position:15-195
               
               
               Cow position:chr21:38121100-38121289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:15-196
               
               
               Cow position:chr21:49700035-49699851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):33, 45

               
               
               Conread position:15-207
               
               
               Cow position:chr21:14452235-14452434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):40, 23

               
               
               Conread position:17-189
               
               
               Cow position:chr21:1059081-1059258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 57

               
               
               Conread position:17-201
               
               
               Cow position:chr21:19258828-19259011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):29, 9

               
               
               Conread position:17-202
               
               
               Cow position:chr21:6624159-6624351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):11, 23

               
               
               Conread position:17-204
               
               
               Cow position:chr21:29658282-29658474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):31, 21

               
               
               Conread position:19-196
               
               
               Cow position:chr21:27341588-27341406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):29, 79

               
               
               Conread position:19-204
               
               
               Cow position:chr21:10151802-10152002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):7, 150

               
               
               Conread position:20-168
               
               
               Cow position:chr21:4998480-4998334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):70, 17

               
               
               Conread position:20-173
               
               
               Cow position:chr21:23460146-23460299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):33, 19

               
               
               Conread position:20-176
               
               
               Cow position:chr21:33791360-33791213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:20-185
               
               
               Cow position:chr21:6758353-6758521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 23

               
               
               Conread position:20-187
               
               
               Cow position:chr21:34151590-34151761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):35, 18

               
               
               Conread position:20-188
               
               
               Cow position:chr21:3400828-3400651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):26, 10

               
               
               Conread position:20-188
               
               
               Cow position:chr21:28244475-28244651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:20-189
               
               
               Cow position:chr21:12739085-12739260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):35, 15

               
               
               Conread position:20-196
               
               
               Cow position:chr21:23322072-23321889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):44, 23

               
               
               Conread position:20-197
               
               
               Cow position:chr21:16152442-16152631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-197
               
               
               Cow position:chr21:36508247-36508424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):58, 90

               
               
               Conread position:20-198
               
               
               Cow position:chr21:18779965-18779785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):39, 87

               
               
               Conread position:20-198
               
               
               Cow position:chr21:27863510-27863323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):28, 155

               
               
               Conread position:20-201
               
               
               Cow position:chr21:938034-938213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):67, 17

               
               
               Conread position:20-201
               
               
               Cow position:chr21:13588768-13588953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):29, 78

               
               
               Conread position:20-201
               
               
               Cow position:chr21:44724359-44724179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):28, 16

               
               
               Conread position:20-204
               
               
               Cow position:chr21:17642978-17642789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 114

               
               
               Conread position:20-204
               
               
               Cow position:chr21:45329939-45329754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 67

               
               
               Conread position:20-207
               
               
               Cow position:chr21:6834056-6834247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 166

               
               
               Conread position:20-207
               
               
               Cow position:chr21:8546012-8545823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:154
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 75

               
               
               Conread position:20-207
               
               
               Cow position:chr21:17183929-17184117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):26, 59

               
               
               Conread position:20-207
               
               
               Cow position:chr21:17193747-17193551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):35, 171

               
               
               Conread position:20-207
               
               
               Cow position:chr21:18568634-18568440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):26, 168

               
               
               Conread position:20-209
               
               
               Cow position:chr21:33727-33921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:20-209
               
               
               Cow position:chr21:7377921-7377726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):29, 168

               
               
               Conread position:20-214
               
               
               Cow position:chr21:47044-47245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):29, 180

               
               
               Conread position:20-223
               
               
               Cow position:chr21:24642526-24642728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 131

               
               
               Conread position:20-237
               
               
               Cow position:chr21:7581896-7581675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):23, 34

               
               
               Conread position:20-244
               
               
               Cow position:chr21:31159409-31159633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):33, 75

               
               
               Conread position:20-304
               
               
               Cow position:chr21:42384516-42384799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 162

               
               
               Conread position:20-312
               
               
               Cow position:chr21:34390969-34390684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 179

               
               
               Conread position:21-186
               
               
               Cow position:chr21:40134167-40134336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:21-198
               
               
               Cow position:chr21:45971164-45970983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:21-215
               
               
               Cow position:chr21:40168620-40168419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):34, 194

               
               
               Conread position:21-260
               
               
               Cow position:chr21:30157802-30157554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):25, 164

               
               
               Conread position:22-196
               
               
               Cow position:chr21:39319406-39319221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:22-198
               
               
               Cow position:chr21:6713518-6713332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:22-204
               
               
               Cow position:chr21:41287787-41287596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:22-207
               
               
               Cow position:chr21:9477175-9477361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):30, 16

               
               
               Conread position:24-222
               
               
               Cow position:chr21:19360167-19359961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:25-207
               
               
               Cow position:chr21:31652403-31652584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):68, 30

               
               
               Conread position:25-207
               
               
               Cow position:chr21:41140706-41140518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:26-207
               
               
               Cow position:chr21:44829744-44829559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):16, 25

               
               
               Conread position:29-201
               
               
               Cow position:chr21:43259236-43259413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):24, 37

               
               
               Conread position:33-301
               
               
               Cow position:chr21:42562654-42562909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):44, 77

               
               
               Conread position:34-299
               
               
               Cow position:chr21:42463669-42463411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):29, 75

               
               
               Conread position:35-179
               
               
               Cow position:chr21:7823381-7823536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):17, 108

               
               
               Conread position:35-186
               
               
               Cow position:chr21:37706392-37706235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:35-208
               
               
               Cow position:chr21:23568248-23568429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:35-308
               
               
               Cow position:chr21:10514831-10515102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):58, 22

               
               
               Conread position:36-204
               
               
               Cow position:chr21:37838040-37837869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):59, 17

               
               
               Conread position:36-307
               
               
               Cow position:chr21:7268856-7268571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):63, 26

               
               
               Conread position:36-315
               
               
               Cow position:chr21:20260294-20260023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):5, 27

               
               
               Conread position:38-207
               
               
               Cow position:chr21:36763085-36763259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):20, 149

               
               
               Conread position:38-308
               
               
               Cow position:chr21:2810131-2809865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):55, 19

               
               
               Conread position:38-327
               
               
               Cow position:chr21:30119720-30120031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):14, 268

               
               
               Conread position:39-204
               
               
               Cow position:chr21:42144851-42145021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):20, 135

               
               
               Conread position:40-201
               
               
               Cow position:chr21:24875381-24875547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 25

               
               
               Conread position:40-226
               
               
               Cow position:chr21:11057848-11057664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:41-188
               
               
               Cow position:chr21:27081076-27081225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):40, 71

               
               
               Conread position:41-189
               
               
               Cow position:chr21:7583880-7584032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:43-206
               
               
               Cow position:chr21:41610198-41610369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:43-226
               
               
               Cow position:chr21:42131322-42131136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:45-189
               
               
               Cow position:chr21:25383058-25383208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:45-201
               
               
               Cow position:chr21:8213244-8213089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):48, 68

               
               
               Conread position:46-198
               
               
               Cow position:chr21:17252942-17252787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:46-201
               
               
               Cow position:chr21:44592173-44592016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:46-206
               
               
               Cow position:chr21:46809735-46809567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):30, 16

               
               
               Conread position:46-207
               
               
               Cow position:chr21:27677514-27677680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):17, 70

               
               
               Conread position:46-207
               
               
               Cow position:chr21:40475532-40475698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:46-212
               
               
               Cow position:chr21:36682361-36682530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:50-196
               
               
               Cow position:chr21:19868914-19868766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):43, 11

               
               
               Conread position:51-234
               
               
               Cow position:chr21:7681139-7681325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):42, 100

               
               
               Conread position:54-199
               
               
               Cow position:chr21:22939810-22939962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:54-201
               
               
               Cow position:chr21:40291703-40291554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 69

               
               
               Conread position:57-176
               
               
               Cow position:chr21:7221294-7221171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-176
               
               
               Cow position:chr21:35647782-35647659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:57-188
               
               
               Cow position:chr21:712988-713124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:57-197
               
               
               Cow position:chr21:25014980-25014843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):36, 48

               
               
               Conread position:57-208
               
               
               Cow position:chr21:6153848-6154001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):36, 12

               
               
               Conread position:57-303
               
               
               Cow position:chr21:13163905-13164141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):36, 150

               
               
               Conread position:57-308
               
               
               Cow position:chr21:46470232-46470488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):31, 55

               
               
               Conread position:59-196
               
               
               Cow position:chr21:7493219-7493084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:59-292
               
               
               Cow position:chr21:8978497-8978720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):34, 46

               
               
               Conread position:60-207
               
               
               Cow position:chr21:2537090-2536939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:61-195
               
               
               Cow position:chr21:6736139-6736002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):32, 123

               
               
               Conread position:61-196
               
               
               Cow position:chr21:11353115-11353249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):50, 18

               
               
               Conread position:61-209
               
               
               Cow position:chr21:41040994-41041145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):20, 120

               
               
               Conread position:61-292
               
               
               Cow position:chr21:14228230-14228009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):32, 132

               
               
               Conread position:62-196
               
               
               Cow position:chr21:30938621-30938477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:62-201
               
               
               Cow position:chr21:46612743-46612603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:62-207
               
               
               Cow position:chr21:37928700-37928849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:63-208
               
               
               Cow position:chr21:20318565-20318713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:64-188
               
               
               Cow position:chr21:8687090-8686962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:64-188
               
               
               Cow position:chr21:13225768-13225896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:66-311
               
               
               Cow position:chr21:5130313-5130044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:67-196
               
               
               Cow position:chr21:31659091-31658962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):16, 44

               
               
               Conread position:67-297
               
               
               Cow position:chr21:265680-265916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):19, 79

               
               
               Conread position:70-201
               
               
               Cow position:chr21:48482469-48482336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:72-196
               
               
               Cow position:chr21:42017540-42017414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:72-209
               
               
               Cow position:chr21:27744090-27744226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 16

               
               
               Conread position:73-204
               
               
               Cow position:chr21:41994985-41994853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:75-198
               
               
               Cow position:chr21:29418636-29418759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 30

               
               
               Conread position:76-231
               
               
               Cow position:chr21:28824159-28824002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):11, 93

               
               
               Conread position:78-304
               
               
               Cow position:chr21:16928036-16927818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):42, 127

               
               
               Conread position:79-209
               
               
               Cow position:chr21:43265325-43265193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):8, 104

               
               
               Conread position:80-251
               
               
               Cow position:chr21:28617861-28618030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):30, 9

               
               
               Conread position:80-292
               
               
               Cow position:chr21:48478821-48478622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:80-300
               
               
               Cow position:chr21:25159243-25159452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):30, 111

               
               
               Conread position:82-207
               
               
               Cow position:chr21:5214421-5214549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:82-304
               
               
               Cow position:chr21:12200175-12200414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):28, 7

               
               
               Conread position:82-304
               
               
               Cow position:chr21:26658909-26658698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):5, 110

               
               
               Conread position:86-189
               
               
               Cow position:chr21:5405894-5405998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:88
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-190
               
               
               Cow position:chr21:41050967-41051071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 51

               
               
               Conread position:86-201
               
               
               Cow position:chr21:27409654-27409540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):24, 69

               
               
               Conread position:86-209
               
               
               Cow position:chr21:21479223-21479102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):24, 70

               
               
               Conread position:86-213
               
               
               Cow position:chr21:37361164-37361037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):24, 113

               
               
               Conread position:87-207
               
               
               Cow position:chr21:30970014-30970133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):22, 94

               
               
               Conread position:89-300
               
               
               Cow position:chr21:1264505-1264718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):151, 20

               
               
               Conread position:89-301
               
               
               Cow position:chr21:40305024-40305230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):20, 116

               
               
               Conread position:92-304
               
               
               Cow position:chr21:11363751-11363961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):18, 113

               
               
               Conread position:92-304
               
               
               Cow position:chr21:35569280-35569076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):18, 98

               
               
               Conread position:93-313
               
               
               Cow position:chr21:5961862-5962079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):17, 58

               
               
               Conread position:94-198
               
               
               Cow position:chr21:7424928-7424823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:95-207
               
               
               Cow position:chr21:6291833-6291946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:95-311
               
               
               Cow position:chr21:30024584-30024368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):15, 56

               
               
               Conread position:100-312
               
               
               Cow position:chr21:31992920-31993125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):9, 93

               
               
               Conread position:109-309
               
               
               Cow position:chr21:652475-652287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):130, 94

               
               
               Conread position:115-207
               
               
               Cow position:chr21:31258574-31258666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:93
               
               
               Alignm identity:79
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:185-311
               
               
               Cow position:chr21:2927001-2926870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:1-148
               
               
               Cow position:chr22:13849533-13849379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 111

               
               
               Conread position:1-176
               
               
               Cow position:chr22:8733419-8733235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1-176
               
               
               Cow position:chr22:17125504-17125684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):62, 115

               
               
               Conread position:1-184
               
               
               Cow position:chr22:4541863-4542044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):87, 24

               
               
               Conread position:1-184
               
               
               Cow position:chr22:32326723-32326909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):92, 56

               
               
               Conread position:1-185
               
               
               Cow position:chr22:26184244-26184050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-189
               
               
               Cow position:chr22:26017820-26017631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):57, 42

               
               
               Conread position:1-195
               
               
               Cow position:chr22:7140562-7140765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 37

               
               
               Conread position:1-197
               
               
               Cow position:chr22:8882935-8883134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):58, 92

               
               
               Conread position:1-197
               
               
               Cow position:chr22:31599358-31599554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:1-197
               
               
               Cow position:chr22:31646405-31646614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):16, 187

               
               
               Conread position:1-197
               
               
               Cow position:chr22:45513602-45513406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):23, 98

               
               
               Conread position:1-198
               
               
               Cow position:chr22:17126377-17126576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):51, 111

               
               
               Conread position:1-198
               
               
               Cow position:chr22:30269327-30269531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 124

               
               
               Conread position:1-198
               
               
               Cow position:chr22:40349261-40349466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):20, 49

               
               
               Conread position:1-201
               
               
               Cow position:chr22:1326331-1326545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):18, 178

               
               
               Conread position:1-201
               
               
               Cow position:chr22:10532421-10532627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):30, 68

               
               
               Conread position:1-204
               
               
               Cow position:chr22:42617918-42618131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):41, 182

               
               
               Conread position:1-205
               
               
               Cow position:chr22:27480816-27481027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):51, 37

               
               
               Conread position:1-206
               
               
               Cow position:chr22:5595890-5595679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:1-206
               
               
               Cow position:chr22:13932095-13932317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr22:1848989-1849205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):21, 191

               
               
               Conread position:1-207
               
               
               Cow position:chr22:3987437-3987652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):48, 37

               
               
               Conread position:1-207
               
               
               Cow position:chr22:18926272-18926489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr22:18933802-18933581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr22:27907954-27907746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):80, 37

               
               
               Conread position:1-207
               
               
               Cow position:chr22:36433057-36432841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):20, 121

               
               
               Conread position:1-208
               
               
               Cow position:chr22:40789481-40789697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):16, 166

               
               
               Conread position:1-209
               
               
               Cow position:chr22:14691055-14690837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):18, 47

               
               
               Conread position:1-211
               
               
               Cow position:chr22:24222991-24223206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):18, 147

               
               
               Conread position:1-215
               
               
               Cow position:chr22:9372440-9372662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:173
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:1-215
               
               
               Cow position:chr22:26339668-26339894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):18, 192

               
               
               Conread position:1-215
               
               
               Cow position:chr22:27275376-27275601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):17, 66

               
               
               Conread position:1-216
               
               
               Cow position:chr22:47555763-47555990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-217
               
               
               Cow position:chr22:36560738-36560515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):58, 133

               
               
               Conread position:1-222
               
               
               Cow position:chr22:1871013-1871244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):21, 191

               
               
               Conread position:1-223
               
               
               Cow position:chr22:14882197-14881974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):21, 100

               
               
               Conread position:1-224
               
               
               Cow position:chr22:34750596-34750823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):42, 128

               
               
               Conread position:1-226
               
               
               Cow position:chr22:38977759-38977991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):11, 25

               
               
               Conread position:1-228
               
               
               Cow position:chr22:2502748-2502980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:182
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):58, 22

               
               
               Conread position:1-237
               
               
               Cow position:chr22:31153868-31154120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):17, 65

               
               
               Conread position:1-247
               
               
               Cow position:chr22:14509554-14509303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:1-304
               
               
               Cow position:chr22:16327417-16327721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):62, 167

               
               
               Conread position:1-304
               
               
               Cow position:chr22:23176525-23176200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:1-304
               
               
               Cow position:chr22:26074834-26075145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):18, 220

               
               
               Conread position:1-307
               
               
               Cow position:chr22:10339197-10338907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):49, 34

               
               
               Conread position:1-308
               
               
               Cow position:chr22:27328976-27328655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-311
               
               
               Cow position:chr22:3253035-3252720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):86, 41

               
               
               Conread position:1-311
               
               
               Cow position:chr22:26706890-26706568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):24, 39

               
               
               Conread position:1-311
               
               
               Cow position:chr22:26969702-26970018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):21, 199

               
               
               Conread position:1-311
               
               
               Cow position:chr22:27835444-27835774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):18, 130

               
               
               Conread position:1-319
               
               
               Cow position:chr22:37324463-37324788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):45, 148

               
               
               Conread position:2-189
               
               
               Cow position:chr22:10122298-10122494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:2-204
               
               
               Cow position:chr22:10567788-10567584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 36

               
               
               Conread position:2-310
               
               
               Cow position:chr22:21530439-21530131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 47

               
               
               Conread position:3-161
               
               
               Cow position:chr22:21415539-21415708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr22:1540833-1541009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):84, 40

               
               
               Conread position:3-195
               
               
               Cow position:chr22:12749985-12749780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:3-204
               
               
               Cow position:chr22:15737154-15737366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:3-206
               
               
               Cow position:chr22:3301423-3301207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:3-314
               
               
               Cow position:chr22:24611172-24610876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):45, 138

               
               
               Conread position:4-198
               
               
               Cow position:chr22:534423-534623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:4-220
               
               
               Cow position:chr22:15915119-15914909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 102

               
               
               Conread position:5-165
               
               
               Cow position:chr22:1975536-1975700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 123

               
               
               Conread position:5-172
               
               
               Cow position:chr22:34398533-34398358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:5-177
               
               
               Cow position:chr22:11767124-11766947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):50, 32

               
               
               Conread position:5-179
               
               
               Cow position:chr22:11458748-11458920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 101

               
               
               Conread position:5-183
               
               
               Cow position:chr22:6936186-6936365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):46, 108

               
               
               Conread position:5-184
               
               
               Cow position:chr22:14378761-14378586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):101, 52

               
               
               Conread position:5-184
               
               
               Cow position:chr22:24628725-24628549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:5-184
               
               
               Cow position:chr22:28058128-28057940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):35, 57

               
               
               Conread position:5-185
               
               
               Cow position:chr22:6622320-6622138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):50, 33

               
               
               Conread position:5-185
               
               
               Cow position:chr22:12929350-12929170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):84, 33

               
               
               Conread position:5-186
               
               
               Cow position:chr22:45846070-45846253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):28, 53

               
               
               Conread position:5-187
               
               
               Cow position:chr22:845825-846018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:5-187
               
               
               Cow position:chr22:23122085-23121889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):16, 129

               
               
               Conread position:5-187
               
               
               Cow position:chr22:24734388-24734204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):42, 103

               
               
               Conread position:5-187
               
               
               Cow position:chr22:40374532-40374720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 180

               
               
               Conread position:5-188
               
               
               Cow position:chr22:22860985-22860798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-188
               
               
               Cow position:chr22:23736089-23735901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):52, 32

               
               
               Conread position:5-189
               
               
               Cow position:chr22:1279462-1279270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):50, 33

               
               
               Conread position:5-189
               
               
               Cow position:chr22:1911593-1911779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:5-189
               
               
               Cow position:chr22:2523886-2524078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):58, 38

               
               
               Conread position:5-189
               
               
               Cow position:chr22:5616232-5616416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):88, 40

               
               
               Conread position:5-189
               
               
               Cow position:chr22:7832422-7832240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):88, 37

               
               
               Conread position:5-189
               
               
               Cow position:chr22:11697272-11697080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):44, 97

               
               
               Conread position:5-189
               
               
               Cow position:chr22:15020472-15020298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 89

               
               
               Conread position:5-189
               
               
               Cow position:chr22:15668548-15668361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):41, 95

               
               
               Conread position:5-189
               
               
               Cow position:chr22:21502667-21502859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):44, 10

               
               
               Conread position:5-189
               
               
               Cow position:chr22:25254099-25254287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):44, 32

               
               
               Conread position:5-189
               
               
               Cow position:chr22:25743026-25742834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:5-189
               
               
               Cow position:chr22:30483841-30484030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):53, 38

               
               
               Conread position:5-189
               
               
               Cow position:chr22:43131635-43131443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:5-190
               
               
               Cow position:chr22:25943401-25943590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):42, 20

               
               
               Conread position:5-195
               
               
               Cow position:chr22:10553761-10553564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:163
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):46, 38

               
               
               Conread position:5-196
               
               
               Cow position:chr22:10919929-10919733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):48, 155

               
               
               Conread position:5-196
               
               
               Cow position:chr22:20626763-20626960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):41, 59

               
               
               Conread position:5-197
               
               
               Cow position:chr22:12968145-12967945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:5-197
               
               
               Cow position:chr22:23856973-23857170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):41, 8

               
               
               Conread position:5-198
               
               
               Cow position:chr22:4583482-4583683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 176

               
               
               Conread position:5-198
               
               
               Cow position:chr22:9597656-9597456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):47, 113

               
               
               Conread position:5-198
               
               
               Cow position:chr22:12313348-12313548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):50, 32

               
               
               Conread position:5-198
               
               
               Cow position:chr22:13769394-13769600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):41, 189

               
               
               Conread position:5-198
               
               
               Cow position:chr22:14178901-14178703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):50, 27

               
               
               Conread position:5-198
               
               
               Cow position:chr22:16251641-16251449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:5-198
               
               
               Cow position:chr22:17950045-17949849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):36, 53

               
               
               Conread position:5-198
               
               
               Cow position:chr22:22908118-22908310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):36, 58

               
               
               Conread position:5-198
               
               
               Cow position:chr22:43237483-43237284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:5-199
               
               
               Cow position:chr22:27740819-27741013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):50, 38

               
               
               Conread position:5-201
               
               
               Cow position:chr22:530643-530451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):47, 89

               
               
               Conread position:5-201
               
               
               Cow position:chr22:877438-877642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr22:1588217-1588423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 32

               
               
               Conread position:5-201
               
               
               Cow position:chr22:2123219-2123418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):85, 195

               
               
               Conread position:5-201
               
               
               Cow position:chr22:4017401-4017600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:5-201
               
               
               Cow position:chr22:8324167-8324362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):88, 56

               
               
               Conread position:5-201
               
               
               Cow position:chr22:11130792-11130997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr22:12681878-12681673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):54, 32

               
               
               Conread position:5-201
               
               
               Cow position:chr22:13957723-13957517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr22:21295802-21295598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr22:24915761-24915964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr22:27681640-27681848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 38

               
               
               Conread position:5-201
               
               
               Cow position:chr22:27828308-27828505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):83, 40

               
               
               Conread position:5-201
               
               
               Cow position:chr22:33399560-33399361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):83, 38

               
               
               Conread position:5-201
               
               
               Cow position:chr22:37201778-37201976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):89, 38

               
               
               Conread position:5-204
               
               
               Cow position:chr22:8090604-8090402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):54, 105

               
               
               Conread position:5-205
               
               
               Cow position:chr22:2623595-2623391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 88

               
               
               Conread position:5-206
               
               
               Cow position:chr22:12315736-12315944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 135

               
               
               Conread position:5-206
               
               
               Cow position:chr22:13286375-13286581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):41, 95

               
               
               Conread position:5-207
               
               
               Cow position:chr22:6852659-6852452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):47, 181

               
               
               Conread position:5-207
               
               
               Cow position:chr22:10302940-10303149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr22:10609278-10609489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):44, 158

               
               
               Conread position:5-207
               
               
               Cow position:chr22:13866585-13866798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr22:16541728-16541519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr22:21567921-21568125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):51, 33

               
               
               Conread position:5-207
               
               
               Cow position:chr22:31870327-31870125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):50, 79

               
               
               Conread position:5-208
               
               
               Cow position:chr22:34726598-34726799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):68, 41

               
               
               Conread position:5-209
               
               
               Cow position:chr22:5290773-5290985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):54, 41

               
               
               Conread position:5-212
               
               
               Cow position:chr22:16621100-16621319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-213
               
               
               Cow position:chr22:25237223-25237003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 161

               
               
               Conread position:5-213
               
               
               Cow position:chr22:28071481-28071697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):36, 138

               
               
               Conread position:5-214
               
               
               Cow position:chr22:3842542-3842757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):47, 110

               
               
               Conread position:5-214
               
               
               Cow position:chr22:30515176-30515400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):41, 186

               
               
               Conread position:5-217
               
               
               Cow position:chr22:37029681-37029464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:5-218
               
               
               Cow position:chr22:23854898-23855113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):54, 133

               
               
               Conread position:5-219
               
               
               Cow position:chr22:1025811-1026034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 210

               
               
               Conread position:5-221
               
               
               Cow position:chr22:4535399-4535188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):53, 38

               
               
               Conread position:5-223
               
               
               Cow position:chr22:3965110-3965335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:5-228
               
               
               Cow position:chr22:26122821-26123048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):41, 182

               
               
               Conread position:5-231
               
               
               Cow position:chr22:32895141-32895372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):41, 105

               
               
               Conread position:5-237
               
               
               Cow position:chr22:3950176-3950413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:5-237
               
               
               Cow position:chr22:8116164-8115925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):37, 63

               
               
               Conread position:5-240
               
               
               Cow position:chr22:18126811-18126568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):30, 157

               
               
               Conread position:5-242
               
               
               Cow position:chr22:23750969-23750729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:5-297
               
               
               Cow position:chr22:34104751-34104458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):44, 196

               
               
               Conread position:5-301
               
               
               Cow position:chr22:27047480-27047203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):44, 98

               
               
               Conread position:5-304
               
               
               Cow position:chr22:17295009-17294700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 38

               
               
               Conread position:5-309
               
               
               Cow position:chr22:17814150-17814470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:237
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):16, 12

               
               
               Conread position:5-310
               
               
               Cow position:chr22:10533517-10533832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):34, 96

               
               
               Conread position:5-311
               
               
               Cow position:chr22:16044495-16044196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 208

               
               
               Conread position:5-311
               
               
               Cow position:chr22:28665210-28665507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):83, 179

               
               
               Conread position:5-329
               
               
               Cow position:chr22:13841061-13841392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 185

               
               
               Conread position:6-185
               
               
               Cow position:chr22:13222037-13222228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:6-195
               
               
               Cow position:chr22:13720098-13719911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):40, 78

               
               
               Conread position:6-201
               
               
               Cow position:chr22:2627498-2627710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:6-207
               
               
               Cow position:chr22:15490580-15490785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):53, 37

               
               
               Conread position:6-259
               
               
               Cow position:chr22:32188929-32188673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):17, 11

               
               
               Conread position:7-187
               
               
               Cow position:chr22:19047892-19047704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 181

               
               
               Conread position:7-189
               
               
               Cow position:chr22:644839-644656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):39, 152

               
               
               Conread position:7-197
               
               
               Cow position:chr22:12678494-12678299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:7-197
               
               
               Cow position:chr22:12892444-12892238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:7-214
               
               
               Cow position:chr22:1983778-1983988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):46, 31

               
               
               Conread position:7-223
               
               
               Cow position:chr22:26658980-26659191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):190, 87

               
               
               Conread position:8-193
               
               
               Cow position:chr22:34616226-34616425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:8-206
               
               
               Cow position:chr22:34618723-34618930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:9-209
               
               
               Cow position:chr22:31510440-31510242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):84, 24

               
               
               Conread position:12-201
               
               
               Cow position:chr22:2109694-2109500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):10, 53

               
               
               Conread position:12-213
               
               
               Cow position:chr22:2216752-2216947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:12-223
               
               
               Cow position:chr22:43119799-43119578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:12-299
               
               
               Cow position:chr22:13878113-13878393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 99

               
               
               Conread position:13-165
               
               
               Cow position:chr22:3544067-3544228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):9, 90

               
               
               Conread position:13-201
               
               
               Cow position:chr22:17119748-17119938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):46, 24

               
               
               Conread position:13-203
               
               
               Cow position:chr22:41853844-41854036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):72, 22

               
               
               Conread position:13-204
               
               
               Cow position:chr22:14372114-14372300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):15, 32

               
               
               Conread position:14-206
               
               
               Cow position:chr22:32698696-32698892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):49, 95

               
               
               Conread position:15-187
               
               
               Cow position:chr22:4137717-4137539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):46, 23

               
               
               Conread position:15-204
               
               
               Cow position:chr22:40387088-40387284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:15-207
               
               
               Cow position:chr22:11600972-11601165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):34, 41

               
               
               Conread position:15-209
               
               
               Cow position:chr22:25846387-25846189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):44, 31

               
               
               Conread position:15-223
               
               
               Cow position:chr22:22223121-22223335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:15-309
               
               
               Cow position:chr22:27431760-27431482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):78, 23

               
               
               Conread position:17-189
               
               
               Cow position:chr22:2409186-2409017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):55, 37

               
               
               Conread position:17-189
               
               
               Cow position:chr22:28672080-28672259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):26, 171

               
               
               Conread position:17-327
               
               
               Cow position:chr22:23036104-23036419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):76, 45

               
               
               Conread position:19-156
               
               
               Cow position:chr22:11195749-11195609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:19-195
               
               
               Cow position:chr22:7164902-7165085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:19-208
               
               
               Cow position:chr22:8539826-8540012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):33, 76

               
               
               Conread position:19-214
               
               
               Cow position:chr22:2076071-2075872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):44, 164

               
               
               Conread position:19-304
               
               
               Cow position:chr22:22155542-22155833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 24

               
               
               Conread position:20-173
               
               
               Cow position:chr22:29344816-29344977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:20-175
               
               
               Cow position:chr22:28290058-28290219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):41, 18

               
               
               Conread position:20-186
               
               
               Cow position:chr22:15338058-15338225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):61, 18

               
               
               Conread position:20-187
               
               
               Cow position:chr22:26316410-26316569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:20-187
               
               
               Cow position:chr22:39602219-39602395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-188
               
               
               Cow position:chr22:15025170-15024996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):39, 30

               
               
               Conread position:20-188
               
               
               Cow position:chr22:34712663-34712839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):28, 147

               
               
               Conread position:20-189
               
               
               Cow position:chr22:14924793-14924617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):29, 41

               
               
               Conread position:20-189
               
               
               Cow position:chr22:34476063-34475883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-194
               
               
               Cow position:chr22:44410663-44410841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 23

               
               
               Conread position:20-195
               
               
               Cow position:chr22:14006121-14006300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):30, 44

               
               
               Conread position:20-196
               
               
               Cow position:chr22:1309789-1309612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):32, 74

               
               
               Conread position:20-196
               
               
               Cow position:chr22:21746582-21746765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 144

               
               
               Conread position:20-196
               
               
               Cow position:chr22:27577681-27577864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-198
               
               
               Cow position:chr22:1265989-1265800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:20-198
               
               
               Cow position:chr22:30049629-30049442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:20-199
               
               
               Cow position:chr22:23833229-23833420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):34, 173

               
               
               Conread position:20-202
               
               
               Cow position:chr22:4075950-4075756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:20-202
               
               
               Cow position:chr22:8412467-8412657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:20-204
               
               
               Cow position:chr22:8287130-8287313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):62, 44

               
               
               Conread position:20-204
               
               
               Cow position:chr22:25690342-25690145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-204
               
               
               Cow position:chr22:25809333-25809148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):74, 23

               
               
               Conread position:20-207
               
               
               Cow position:chr22:6289557-6289369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:20-207
               
               
               Cow position:chr22:12389036-12389232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr22:12829672-12829478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):8, 40

               
               
               Conread position:20-207
               
               
               Cow position:chr22:16533015-16533205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:20-207
               
               
               Cow position:chr22:33448142-33447948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:20-214
               
               
               Cow position:chr22:40120940-40120742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):26, 129

               
               
               Conread position:20-236
               
               
               Cow position:chr22:28704123-28704346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):39, 167

               
               
               Conread position:20-307
               
               
               Cow position:chr22:16823042-16823316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):39, 92

               
               
               Conread position:20-311
               
               
               Cow position:chr22:7851904-7852192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):35, 6

               
               
               Conread position:20-311
               
               
               Cow position:chr22:10285907-10286192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):29, 140

               
               
               Conread position:20-311
               
               
               Cow position:chr22:44180530-44180816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):29, 176

               
               
               Conread position:21-186
               
               
               Cow position:chr22:43291956-43291791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):25, 86

               
               
               Conread position:21-207
               
               
               Cow position:chr22:29642053-29642242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):41, 104

               
               
               Conread position:21-244
               
               
               Cow position:chr22:21890419-21890186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):30, 96

               
               
               Conread position:22-199
               
               
               Cow position:chr22:47525690-47525871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):33, 87

               
               
               Conread position:22-204
               
               
               Cow position:chr22:25246856-25247042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):16, 48

               
               
               Conread position:23-201
               
               
               Cow position:chr22:34894916-34895089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):15, 58

               
               
               Conread position:24-209
               
               
               Cow position:chr22:4292688-4292882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):24, 90

               
               
               Conread position:25-190
               
               
               Cow position:chr22:45506062-45505889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):33, 76

               
               
               Conread position:26-179
               
               
               Cow position:chr22:13735071-13734915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):21, 89

               
               
               Conread position:26-197
               
               
               Cow position:chr22:2912639-2912465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):29, 129

               
               
               Conread position:26-207
               
               
               Cow position:chr22:30606807-30606989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):20, 38

               
               
               Conread position:27-286
               
               
               Cow position:chr22:14139931-14140197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):21, 223

               
               
               Conread position:28-304
               
               
               Cow position:chr22:14647032-14647296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):22, 142

               
               
               Conread position:30-198
               
               
               Cow position:chr22:24175940-24175772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):13, 73

               
               
               Conread position:30-204
               
               
               Cow position:chr22:23676017-23675840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):27, 76

               
               
               Conread position:33-196
               
               
               Cow position:chr22:39622507-39622662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):10, 25

               
               
               Conread position:34-192
               
               
               Cow position:chr22:3945333-3945485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):14, 60

               
               
               Conread position:34-215
               
               
               Cow position:chr22:44384537-44384362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):123, 19

               
               
               Conread position:35-198
               
               
               Cow position:chr22:33985840-33985679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):58, 10

               
               
               Conread position:35-201
               
               
               Cow position:chr22:12188528-12188354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):17, 43

               
               
               Conread position:35-201
               
               
               Cow position:chr22:23372905-23372739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):53, 11

               
               
               Conread position:35-215
               
               
               Cow position:chr22:32892651-32892835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:35-221
               
               
               Cow position:chr22:12195615-12195422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):17, 43

               
               
               Conread position:35-280
               
               
               Cow position:chr22:35753348-35753112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):66, 22

               
               
               Conread position:35-305
               
               
               Cow position:chr22:24032259-24031988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):17, 237

               
               
               Conread position:36-178
               
               
               Cow position:chr22:16265640-16265784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 14

               
               
               Conread position:36-198
               
               
               Cow position:chr22:21304281-21304117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 21

               
               
               Conread position:36-207
               
               
               Cow position:chr22:32514250-32514426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):50, 26

               
               
               Conread position:37-284
               
               
               Cow position:chr22:10752582-10752344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:38-198
               
               
               Cow position:chr22:9171368-9171532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):13, 27

               
               
               Conread position:39-201
               
               
               Cow position:chr22:17128970-17129138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:39-215
               
               
               Cow position:chr22:1106029-1106206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):54, 25

               
               
               Conread position:40-213
               
               
               Cow position:chr22:27274739-27274561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):15, 36

               
               
               Conread position:41-188
               
               
               Cow position:chr22:1776023-1776174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):48, 21

               
               
               Conread position:41-196
               
               
               Cow position:chr22:23398440-23398282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):38, 16

               
               
               Conread position:41-292
               
               
               Cow position:chr22:11986948-11986696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):23, 92

               
               
               Conread position:43-183
               
               
               Cow position:chr22:30686994-30687135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 22

               
               
               Conread position:43-207
               
               
               Cow position:chr22:4156852-4156686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):50, 152

               
               
               Conread position:43-207
               
               
               Cow position:chr22:6754304-6754133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:44-215
               
               
               Cow position:chr22:18967193-18967022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):8, 148

               
               
               Conread position:45-167
               
               
               Cow position:chr22:28728712-28728588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:45-201
               
               
               Cow position:chr22:25387295-25387456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):48, 17

               
               
               Conread position:45-204
               
               
               Cow position:chr22:4657079-4656913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:46-197
               
               
               Cow position:chr22:6176316-6176163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 16

               
               
               Conread position:46-201
               
               
               Cow position:chr22:3470255-3470416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:46-216
               
               
               Cow position:chr22:30643165-30642993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:46-308
               
               
               Cow position:chr22:10323848-10324108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):47, 183

               
               
               Conread position:46-308
               
               
               Cow position:chr22:20846823-20847076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):45, 18

               
               
               Conread position:46-308
               
               
               Cow position:chr22:21235464-21235196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):9, 105

               
               
               Conread position:46-314
               
               
               Cow position:chr22:8840573-8840847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:47-184
               
               
               Cow position:chr22:4310402-4310263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:47-198
               
               
               Cow position:chr22:25539968-25540123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:47-201
               
               
               Cow position:chr22:12902877-12902728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):52, 15

               
               
               Conread position:47-201
               
               
               Cow position:chr22:15618573-15618731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:47-209
               
               
               Cow position:chr22:7362008-7361844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):46, 97

               
               
               Conread position:47-300
               
               
               Cow position:chr22:34930806-34930557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):56, 46

               
               
               Conread position:48-213
               
               
               Cow position:chr22:24802730-24802560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:50-192
               
               
               Cow position:chr22:11344478-11344627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):13, 125

               
               
               Conread position:50-197
               
               
               Cow position:chr22:11352480-11352328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:50-207
               
               
               Cow position:chr22:17198111-17198271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):40, 12

               
               
               Conread position:50-209
               
               
               Cow position:chr22:1710502-1710665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):38, 19

               
               
               Conread position:51-201
               
               
               Cow position:chr22:1065078-1065231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:51-287
               
               
               Cow position:chr22:1977723-1977959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:51-311
               
               
               Cow position:chr22:8710398-8710145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:53-207
               
               
               Cow position:chr22:14676660-14676818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:54-201
               
               
               Cow position:chr22:5712564-5712713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:55-189
               
               
               Cow position:chr22:26417260-26417398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:57-169
               
               
               Cow position:chr22:40869812-40869926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:57-176
               
               
               Cow position:chr22:29842725-29842602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-197
               
               
               Cow position:chr22:6097038-6096892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 101

               
               
               Conread position:57-198
               
               
               Cow position:chr22:2643909-2644052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:57-200
               
               
               Cow position:chr22:39446271-39446417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:57-201
               
               
               Cow position:chr22:18847981-18847837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 7

               
               
               Conread position:57-201
               
               
               Cow position:chr22:28937953-28937810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):36, 72

               
               
               Conread position:57-207
               
               
               Cow position:chr22:4736002-4736156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:57-208
               
               
               Cow position:chr22:28120699-28120858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:57-209
               
               
               Cow position:chr22:47562682-47562841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:57-222
               
               
               Cow position:chr22:6326423-6326593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:59-207
               
               
               Cow position:chr22:28146657-28146812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:59-281
               
               
               Cow position:chr22:21215699-21215905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):28, 18

               
               
               Conread position:61-190
               
               
               Cow position:chr22:16724704-16724571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:61-196
               
               
               Cow position:chr22:43495918-43496056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 108

               
               
               Conread position:61-311
               
               
               Cow position:chr22:3239895-3240130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):50, 102

               
               
               Conread position:62-189
               
               
               Cow position:chr22:3486788-3486663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:62-195
               
               
               Cow position:chr22:2876814-2876677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:62-196
               
               
               Cow position:chr22:26267834-26267969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:62-207
               
               
               Cow position:chr22:14487919-14488068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:63-197
               
               
               Cow position:chr22:21483933-21484064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:63-201
               
               
               Cow position:chr22:42050559-42050696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 38

               
               
               Conread position:64-207
               
               
               Cow position:chr22:23265666-23265519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:67-218
               
               
               Cow position:chr22:8330987-8331141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):26, 146

               
               
               Conread position:69-223
               
               
               Cow position:chr22:22606216-22606373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):24, 132

               
               
               Conread position:70-196
               
               
               Cow position:chr22:16346388-16346518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:73-209
               
               
               Cow position:chr22:35533235-35533099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):14, 36

               
               
               Conread position:78-204
               
               
               Cow position:chr22:10913665-10913794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:79-192
               
               
               Cow position:chr22:12599374-12599489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-200
               
               
               Cow position:chr22:12777374-12777251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:79-204
               
               
               Cow position:chr22:23630350-23630222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):14, 59

               
               
               Conread position:79-311
               
               
               Cow position:chr22:6655759-6655523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):8, 129

               
               
               Conread position:79-311
               
               
               Cow position:chr22:26490505-26490739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):31, 65

               
               
               Conread position:80-200
               
               
               Cow position:chr22:6793872-6793747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 118

               
               
               Conread position:84-304
               
               
               Cow position:chr22:2516898-2516678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):26, 192

               
               
               Conread position:85-311
               
               
               Cow position:chr22:31308894-31309119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):24, 107

               
               
               Conread position:86-204
               
               
               Cow position:chr22:27401748-27401869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-219
               
               
               Cow position:chr22:31064414-31064547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):24, 37

               
               
               Conread position:86-296
               
               
               Cow position:chr22:26107133-26107348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):110, 18

               
               
               Conread position:86-311
               
               
               Cow position:chr22:3997764-3998000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:183
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):24, 227

               
               
               Conread position:86-311
               
               
               Cow position:chr22:27701167-27701385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):154, 23

               
               
               Conread position:87-201
               
               
               Cow position:chr22:2704310-2704425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:87-216
               
               
               Cow position:chr22:30640935-30641064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):24, 111

               
               
               Conread position:88-201
               
               
               Cow position:chr22:27052720-27052608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):24, 91

               
               
               Conread position:88-308
               
               
               Cow position:chr22:11468388-11468601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):21, 103

               
               
               Conread position:88-312
               
               
               Cow position:chr22:16057990-16058199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:89-207
               
               
               Cow position:chr22:1991613-1991727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 77

               
               
               Conread position:92-201
               
               
               Cow position:chr22:48155443-48155553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:92-207
               
               
               Cow position:chr22:25312526-25312642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:92-304
               
               
               Cow position:chr22:32642698-32642923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:93-198
               
               
               Cow position:chr22:1830066-1830172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:93-311
               
               
               Cow position:chr22:23397956-23397740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:174
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):17, 88

               
               
               Conread position:95-311
               
               
               Cow position:chr22:40590799-40590996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):144, 27

               
               
               Conread position:102-206
               
               
               Cow position:chr22:1074291-1074396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:104-281
               
               
               Cow position:chr22:13326924-13327093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:104-304
               
               
               Cow position:chr22:14816078-14815871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:110-266
               
               
               Cow position:chr22:6122849-6122702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:111-201
               
               
               Cow position:chr22:43730322-43730412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:91
               
               
               Alignm identity:77
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:115-300
               
               
               Cow position:chr22:23695349-23695174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:147-310
               
               
               Cow position:chr22:30861799-30861640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):153, 44

               
               
               Conread position:154-288
               
               
               Cow position:chr22:14067778-14067654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:186-335
               
               
               Cow position:chr22:1602405-1602555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 6

               
               
               Conread position:1-163
               
               
               Cow position:chr23:32309610-32309780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):52, 37

               
               
               Conread position:1-183
               
               
               Cow position:chr23:15287212-15287025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):51, 38

               
               
               Conread position:1-185
               
               
               Cow position:chr23:2405821-2406018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):20, 45

               
               
               Conread position:1-189
               
               
               Cow position:chr23:26949123-26949317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-192
               
               
               Cow position:chr23:40781243-40781452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):18, 198

               
               
               Conread position:1-195
               
               
               Cow position:chr23:6223906-6224100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):21, 44

               
               
               Conread position:1-197
               
               
               Cow position:chr23:3282198-3281994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):37, 188

               
               
               Conread position:1-201
               
               
               Cow position:chr23:41472544-41472754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):46, 145

               
               
               Conread position:1-207
               
               
               Cow position:chr23:5436723-5436504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr23:5437080-5436865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):18, 53

               
               
               Conread position:1-207
               
               
               Cow position:chr23:16582983-16582771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:1-209
               
               
               Cow position:chr23:36018066-36018291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:1-214
               
               
               Cow position:chr23:8293428-8293647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):21, 59

               
               
               Conread position:1-216
               
               
               Cow position:chr23:8698359-8698568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):92, 22

               
               
               Conread position:1-220
               
               
               Cow position:chr23:30662711-30662486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):14, 114

               
               
               Conread position:1-229
               
               
               Cow position:chr23:6244668-6244439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):11, 63

               
               
               Conread position:1-265
               
               
               Cow position:chr23:14739365-14739653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:1-304
               
               
               Cow position:chr23:3408993-3408684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):18, 160

               
               
               Conread position:1-304
               
               
               Cow position:chr23:11380327-11380029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 144

               
               
               Conread position:1-313
               
               
               Cow position:chr23:20604789-20604476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):46, 18

               
               
               Conread position:2-304
               
               
               Cow position:chr23:41220294-41219989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 55

               
               
               Conread position:3-201
               
               
               Cow position:chr23:37951-38160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:3-204
               
               
               Cow position:chr23:40648812-40648595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:4-194
               
               
               Cow position:chr23:5723473-5723660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 93

               
               
               Conread position:4-204
               
               
               Cow position:chr23:39775649-39775862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):21, 43

               
               
               Conread position:4-215
               
               
               Cow position:chr23:26794984-26794771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):42, 137

               
               
               Conread position:5-161
               
               
               Cow position:chr23:18322486-18322334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):101, 30

               
               
               Conread position:5-170
               
               
               Cow position:chr23:3262566-3262396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:5-174
               
               
               Cow position:chr23:24984238-24984064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-176
               
               
               Cow position:chr23:36309350-36309528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr23:35247295-35247483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-187
               
               
               Cow position:chr23:1885242-1885054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-188
               
               
               Cow position:chr23:15280569-15280377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr23:1742286-1742474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):58, 123

               
               
               Conread position:5-189
               
               
               Cow position:chr23:5162357-5162550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 105

               
               
               Conread position:5-189
               
               
               Cow position:chr23:13599274-13599461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):48, 38

               
               
               Conread position:5-189
               
               
               Cow position:chr23:16700109-16699921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr23:18902118-18901934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):85, 54

               
               
               Conread position:5-189
               
               
               Cow position:chr23:27544758-27544947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):41, 187

               
               
               Conread position:5-190
               
               
               Cow position:chr23:1876640-1876833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):50, 33

               
               
               Conread position:5-190
               
               
               Cow position:chr23:19774703-19774890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):86, 38

               
               
               Conread position:5-195
               
               
               Cow position:chr23:12091429-12091230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 184

               
               
               Conread position:5-196
               
               
               Cow position:chr23:18802342-18802142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-196
               
               
               Cow position:chr23:22804655-22804852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:5-200
               
               
               Cow position:chr23:29345831-29345638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):106, 88

               
               
               Conread position:5-201
               
               
               Cow position:chr23:187107-187311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr23:2282245-2282050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):33, 46

               
               
               Conread position:5-201
               
               
               Cow position:chr23:3244986-3244785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):43, 137

               
               
               Conread position:5-201
               
               
               Cow position:chr23:11081184-11081388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:5-201
               
               
               Cow position:chr23:13520380-13520583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):53, 33

               
               
               Conread position:5-201
               
               
               Cow position:chr23:18296738-18296940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr23:37065772-37065982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr23:39813433-39813632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):33, 18

               
               
               Conread position:5-201
               
               
               Cow position:chr23:41348698-41348492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 186

               
               
               Conread position:5-204
               
               
               Cow position:chr23:5881589-5881382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:5-204
               
               
               Cow position:chr23:21452802-21452594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:5-205
               
               
               Cow position:chr23:1188975-1188781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 105

               
               
               Conread position:5-206
               
               
               Cow position:chr23:10829656-10829444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr23:4726717-4726928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:5-207
               
               
               Cow position:chr23:14651775-14651572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 109

               
               
               Conread position:5-207
               
               
               Cow position:chr23:15743021-15743228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:5-207
               
               
               Cow position:chr23:25864764-25864560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):74, 45

               
               
               Conread position:5-208
               
               
               Cow position:chr23:9734344-9734551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:5-209
               
               
               Cow position:chr23:16780620-16780421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:5-209
               
               
               Cow position:chr23:19173424-19173225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):88, 41

               
               
               Conread position:5-212
               
               
               Cow position:chr23:38208655-38208868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):58, 137

               
               
               Conread position:5-213
               
               
               Cow position:chr23:344245-344040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):105, 48

               
               
               Conread position:5-213
               
               
               Cow position:chr23:4327760-4327557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):81, 38

               
               
               Conread position:5-222
               
               
               Cow position:chr23:29069513-29069288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):47, 38

               
               
               Conread position:5-234
               
               
               Cow position:chr23:19371141-19370907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):81, 38

               
               
               Conread position:5-234
               
               
               Cow position:chr23:39780685-39780920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):54, 21

               
               
               Conread position:5-237
               
               
               Cow position:chr23:28945135-28944896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:5-239
               
               
               Cow position:chr23:16961225-16961468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:5-275
               
               
               Cow position:chr23:30950886-30951153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):47, 179

               
               
               Conread position:5-293
               
               
               Cow position:chr23:21336557-21336278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:225
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):41, 185

               
               
               Conread position:5-304
               
               
               Cow position:chr23:24480030-24479721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):54, 143

               
               
               Conread position:5-304
               
               
               Cow position:chr23:38503178-38502881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):44, 152

               
               
               Conread position:5-307
               
               
               Cow position:chr23:38455252-38454958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 209

               
               
               Conread position:5-308
               
               
               Cow position:chr23:21502710-21502399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):38, 201

               
               
               Conread position:5-309
               
               
               Cow position:chr23:3430998-3431295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):38, 177

               
               
               Conread position:5-311
               
               
               Cow position:chr23:1767759-1768060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 191

               
               
               Conread position:5-311
               
               
               Cow position:chr23:13555508-13555224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):41, 131

               
               
               Conread position:5-311
               
               
               Cow position:chr23:18402359-18402054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:5-312
               
               
               Cow position:chr23:13511664-13511964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 49

               
               
               Conread position:5-312
               
               
               Cow position:chr23:20002184-20002492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):43, 114

               
               
               Conread position:5-326
               
               
               Cow position:chr23:4966749-4967086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):51, 38

               
               
               Conread position:6-207
               
               
               Cow position:chr23:33622222-33622011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:6-304
               
               
               Cow position:chr23:14164470-14164174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):41, 187

               
               
               Conread position:7-196
               
               
               Cow position:chr23:6592768-6592582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):39, 89

               
               
               Conread position:7-198
               
               
               Cow position:chr23:1981725-1981533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 57

               
               
               Conread position:7-198
               
               
               Cow position:chr23:34356575-34356770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):45, 135

               
               
               Conread position:7-223
               
               
               Cow position:chr23:35369114-35368898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 158

               
               
               Conread position:7-311
               
               
               Cow position:chr23:3247516-3247834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 48

               
               
               Conread position:8-197
               
               
               Cow position:chr23:6995050-6994854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-209
               
               
               Cow position:chr23:14523916-14524127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:12-189
               
               
               Cow position:chr23:349016-348827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:12-189
               
               
               Cow position:chr23:39753051-39753234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):15, 162

               
               
               Conread position:12-194
               
               
               Cow position:chr23:10497643-10497823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):11, 26

               
               
               Conread position:12-208
               
               
               Cow position:chr23:22298101-22297897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:13-198
               
               
               Cow position:chr23:18822925-18823119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:14-170
               
               
               Cow position:chr23:12050297-12050458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 24

               
               
               Conread position:15-189
               
               
               Cow position:chr23:13202424-13202238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):9, 144

               
               
               Conread position:16-178
               
               
               Cow position:chr23:11224797-11224965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 49

               
               
               Conread position:16-201
               
               
               Cow position:chr23:28530007-28529822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):26, 90

               
               
               Conread position:16-210
               
               
               Cow position:chr23:26283665-26283860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):26, 132

               
               
               Conread position:17-175
               
               
               Cow position:chr23:25669152-25668985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):38, 22

               
               
               Conread position:19-198
               
               
               Cow position:chr23:18698078-18697896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):71, 8

               
               
               Conread position:19-213
               
               
               Cow position:chr23:4528936-4528734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):29, 152

               
               
               Conread position:20-175
               
               
               Cow position:chr23:11845220-11845382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):28, 12

               
               
               Conread position:20-187
               
               
               Cow position:chr23:35929901-35930069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):73, 17

               
               
               Conread position:20-190
               
               
               Cow position:chr23:6035380-6035552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 89

               
               
               Conread position:20-196
               
               
               Cow position:chr23:1655839-1656022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):34, 23

               
               
               Conread position:20-196
               
               
               Cow position:chr23:1701115-1701299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-198
               
               
               Cow position:chr23:13945983-13946167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):39, 106

               
               
               Conread position:20-200
               
               
               Cow position:chr23:3191182-3190993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:20-201
               
               
               Cow position:chr23:21446064-21446249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):32, 18

               
               
               Conread position:20-201
               
               
               Cow position:chr23:39083394-39083583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):33, 163

               
               
               Conread position:20-207
               
               
               Cow position:chr23:306463-306661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr23:307396-307594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr23:4968576-4968391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):35, 23

               
               
               Conread position:20-207
               
               
               Cow position:chr23:10852996-10853184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):28, 78

               
               
               Conread position:20-207
               
               
               Cow position:chr23:18416102-18415917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):68, 18

               
               
               Conread position:20-207
               
               
               Cow position:chr23:35239292-35239489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):52, 113

               
               
               Conread position:20-213
               
               
               Cow position:chr23:36172466-36172669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:20-215
               
               
               Cow position:chr23:11129175-11129377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):35, 155

               
               
               Conread position:20-222
               
               
               Cow position:chr23:1254632-1254839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):29, 192

               
               
               Conread position:20-228
               
               
               Cow position:chr23:10554064-10553851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 14

               
               
               Conread position:20-304
               
               
               Cow position:chr23:3244522-3244250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 199

               
               
               Conread position:20-304
               
               
               Cow position:chr23:4916629-4916922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):43, 167

               
               
               Conread position:20-310
               
               
               Cow position:chr23:1398091-1397802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 175

               
               
               Conread position:21-188
               
               
               Cow position:chr23:36128960-36128794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:21-209
               
               
               Cow position:chr23:35503729-35503912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):42, 17

               
               
               Conread position:21-212
               
               
               Cow position:chr23:4877302-4877504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:21-223
               
               
               Cow position:chr23:10876341-10876555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:21-296
               
               
               Cow position:chr23:20388705-20388433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 22

               
               
               Conread position:21-300
               
               
               Cow position:chr23:20435111-20434817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):60, 29

               
               
               Conread position:23-201
               
               
               Cow position:chr23:38845553-38845731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):67, 43

               
               
               Conread position:24-186
               
               
               Cow position:chr23:23409688-23409850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):65, 18

               
               
               Conread position:24-188
               
               
               Cow position:chr23:1427036-1426866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):27, 14

               
               
               Conread position:24-200
               
               
               Cow position:chr23:17484890-17484718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):39, 19

               
               
               Conread position:24-207
               
               
               Cow position:chr23:20557897-20557706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:24-209
               
               
               Cow position:chr23:21309464-21309272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):25, 142

               
               
               Conread position:26-300
               
               
               Cow position:chr23:12334158-12334420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):16, 106

               
               
               Conread position:27-209
               
               
               Cow position:chr23:9226238-9226419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):53, 78

               
               
               Conread position:27-236
               
               
               Cow position:chr23:4104355-4104565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):64, 29

               
               
               Conread position:31-188
               
               
               Cow position:chr23:4972720-4972885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):17, 95

               
               
               Conread position:31-207
               
               
               Cow position:chr23:4003595-4003785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:32-197
               
               
               Cow position:chr23:39793634-39793803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):18, 47

               
               
               Conread position:33-198
               
               
               Cow position:chr23:29479849-29480014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):19, 9

               
               
               Conread position:35-186
               
               
               Cow position:chr23:13137973-13137818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:35-201
               
               
               Cow position:chr23:6767869-6768037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):42, 27

               
               
               Conread position:35-310
               
               
               Cow position:chr23:13674074-13673805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):14, 198

               
               
               Conread position:36-201
               
               
               Cow position:chr23:2501889-2501721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 26

               
               
               Conread position:36-201
               
               
               Cow position:chr23:11212471-11212640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:36-218
               
               
               Cow position:chr23:7574657-7574476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):74, 50

               
               
               Conread position:36-222
               
               
               Cow position:chr23:4336032-4336220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):35, 77

               
               
               Conread position:36-223
               
               
               Cow position:chr23:360725-360537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):46, 21

               
               
               Conread position:37-208
               
               
               Cow position:chr23:25990472-25990298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):56, 86

               
               
               Conread position:39-304
               
               
               Cow position:chr23:21440031-21439758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):54, 23

               
               
               Conread position:40-198
               
               
               Cow position:chr23:24701111-24700952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:40-201
               
               
               Cow position:chr23:534198-534360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:40-245
               
               
               Cow position:chr23:30655841-30655638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):53, 17

               
               
               Conread position:44-215
               
               
               Cow position:chr23:3234813-3234636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):11, 167

               
               
               Conread position:44-237
               
               
               Cow position:chr23:5174521-5174711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):66, 15

               
               
               Conread position:45-186
               
               
               Cow position:chr23:1759220-1759364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):36, 24

               
               
               Conread position:45-198
               
               
               Cow position:chr23:3293669-3293824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):48, 17

               
               
               Conread position:46-189
               
               
               Cow position:chr23:23904353-23904208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:46-212
               
               
               Cow position:chr23:18605432-18605265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):47, 20

               
               
               Conread position:46-215
               
               
               Cow position:chr23:26986296-26986125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:47-187
               
               
               Cow position:chr23:4864407-4864550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):46, 15

               
               
               Conread position:49-209
               
               
               Cow position:chr23:22238844-22238681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 13

               
               
               Conread position:50-308
               
               
               Cow position:chr23:3814302-3814055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:51-188
               
               
               Cow position:chr23:4054196-4054336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 133

               
               
               Conread position:52-188
               
               
               Cow position:chr23:57184-57042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:54-207
               
               
               Cow position:chr23:20563678-20563833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 105

               
               
               Conread position:56-207
               
               
               Cow position:chr23:38267414-38267263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):54, 125

               
               
               Conread position:57-198
               
               
               Cow position:chr23:14569516-14569371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:57-230
               
               
               Cow position:chr23:7596362-7596192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):37, 55

               
               
               Conread position:57-296
               
               
               Cow position:chr23:25938402-25938181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 75

               
               
               Conread position:57-300
               
               
               Cow position:chr23:4241653-4241417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):53, 36

               
               
               Conread position:57-310
               
               
               Cow position:chr23:3835610-3835373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):34, 137

               
               
               Conread position:57-330
               
               
               Cow position:chr23:21438478-21438751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):33, 220

               
               
               Conread position:58-204
               
               
               Cow position:chr23:16447701-16447555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):35, 134

               
               
               Conread position:60-201
               
               
               Cow position:chr23:21423755-21423900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:60-207
               
               
               Cow position:chr23:32621271-32621424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:61-194
               
               
               Cow position:chr23:14895685-14895548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:61-196
               
               
               Cow position:chr23:5686633-5686494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:61-207
               
               
               Cow position:chr23:18739476-18739325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:61-248
               
               
               Cow position:chr23:18787295-18787105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):16, 25

               
               
               Conread position:61-311
               
               
               Cow position:chr23:27790006-27790249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 77

               
               
               Conread position:62-188
               
               
               Cow position:chr23:29459109-29458979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr23:17597416-17597562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:62-207
               
               
               Cow position:chr23:2470992-2471141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:62-309
               
               
               Cow position:chr23:2488003-2487760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):17, 124

               
               
               Conread position:64-189
               
               
               Cow position:chr23:24779551-24779422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:64-207
               
               
               Cow position:chr23:40738027-40737879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:67-197
               
               
               Cow position:chr23:12405825-12405692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:72-237
               
               
               Cow position:chr23:32546265-32546099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):131, 21

               
               
               Conread position:75-237
               
               
               Cow position:chr23:31299180-31299343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:79-197
               
               
               Cow position:chr23:17012730-17012609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:79-198
               
               
               Cow position:chr23:32480007-32479888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:79-223
               
               
               Cow position:chr23:19273663-19273804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):9, 33

               
               
               Conread position:79-310
               
               
               Cow position:chr23:18106962-18106733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):8, 94

               
               
               Conread position:79-317
               
               
               Cow position:chr23:1798119-1798354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):8, 132

               
               
               Conread position:80-275
               
               
               Cow position:chr23:5203924-5203735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):13, 71

               
               
               Conread position:82-195
               
               
               Cow position:chr23:3979751-3979635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:82-207
               
               
               Cow position:chr23:1480652-1480778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:85-303
               
               
               Cow position:chr23:33360884-33360674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):154, 23

               
               
               Conread position:86-201
               
               
               Cow position:chr23:38993073-38992959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):24, 58

               
               
               Conread position:86-209
               
               
               Cow position:chr23:22530422-22530298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-304
               
               
               Cow position:chr23:12975574-12975780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):26, 81

               
               
               Conread position:86-313
               
               
               Cow position:chr23:1503588-1503823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):24, 165

               
               
               Conread position:86-319
               
               
               Cow position:chr23:23114075-23114299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):16, 106

               
               
               Conread position:87-207
               
               
               Cow position:chr23:33232684-33232564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 84

               
               
               Conread position:87-249
               
               
               Cow position:chr23:3484290-3484450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):23, 66

               
               
               Conread position:88-200
               
               
               Cow position:chr23:18417111-18417224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:88-201
               
               
               Cow position:chr23:4416269-4416155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:88-304
               
               
               Cow position:chr23:12602456-12602233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:88-308
               
               
               Cow position:chr23:18354668-18354881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):18, 67

               
               
               Conread position:89-304
               
               
               Cow position:chr23:26694162-26693961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):22, 104

               
               
               Conread position:89-309
               
               
               Cow position:chr23:26591891-26591687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):21, 35

               
               
               Conread position:93-310
               
               
               Cow position:chr23:38468072-38467844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:96-201
               
               
               Cow position:chr23:21664330-21664437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:96-207
               
               
               Cow position:chr23:164787-164898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:96-311
               
               
               Cow position:chr23:29972413-29972607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):7, 86

               
               
               Conread position:97-245
               
               
               Cow position:chr23:5387063-5386917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):14, 101

               
               
               Conread position:97-307
               
               
               Cow position:chr23:1671059-1671272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):13, 86

               
               
               Conread position:101-207
               
               
               Cow position:chr23:35718344-35718449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:104-304
               
               
               Cow position:chr23:41099740-41099543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):135, 76

               
               
               Conread position:109-231
               
               
               Cow position:chr23:38845882-38846004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):106, 80

               
               
               Conread position:110-207
               
               
               Cow position:chr23:38117999-38118096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:116-309
               
               
               Cow position:chr23:20437550-20437356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):74, 47

               
               
               Conread position:121-303
               
               
               Cow position:chr23:32095095-32094927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:121-311
               
               
               Cow position:chr23:27145094-27144907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):46, 72

               
               
               Conread position:129-311
               
               
               Cow position:chr23:5350743-5350555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):54, 148

               
               
               Conread position:146-310
               
               
               Cow position:chr23:4578990-4578826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):96, 28

               
               
               Conread position:171-319
               
               
               Cow position:chr23:19274164-19274314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:193-312
               
               
               Cow position:chr23:25379077-25379197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:1-170
               
               
               Cow position:chr24:24755342-24755522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:1-183
               
               
               Cow position:chr24:38841512-38841334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):18, 47

               
               
               Conread position:1-188
               
               
               Cow position:chr24:29063757-29063566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:1-189
               
               
               Cow position:chr24:15246747-15246549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:1-189
               
               
               Cow position:chr24:33098586-33098379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:1-194
               
               
               Cow position:chr24:16089127-16089326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):21, 34

               
               
               Conread position:1-201
               
               
               Cow position:chr24:28721788-28721990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):21, 44

               
               
               Conread position:1-204
               
               
               Cow position:chr24:16994779-16994990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):16, 40

               
               
               Conread position:1-204
               
               
               Cow position:chr24:37975084-37974872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):37, 67

               
               
               Conread position:1-206
               
               
               Cow position:chr24:27290762-27290982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr24:29586886-29587110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 40

               
               
               Conread position:1-209
               
               
               Cow position:chr24:6102720-6102941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-212
               
               
               Cow position:chr24:17832916-17832704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):21, 65

               
               
               Conread position:1-213
               
               
               Cow position:chr24:41068164-41068381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):90, 42

               
               
               Conread position:1-214
               
               
               Cow position:chr24:28690586-28690803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):45, 24

               
               
               Conread position:1-304
               
               
               Cow position:chr24:18390393-18390103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):25, 60

               
               
               Conread position:1-308
               
               
               Cow position:chr24:2675219-2675515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):20, 62

               
               
               Conread position:1-312
               
               
               Cow position:chr24:16895539-16895242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):46, 181

               
               
               Conread position:1-319
               
               
               Cow position:chr24:43364257-43364591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):20, 123

               
               
               Conread position:1-322
               
               
               Cow position:chr24:24457354-24457049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):20, 179

               
               
               Conread position:2-188
               
               
               Cow position:chr24:24491118-24490925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):41, 65

               
               
               Conread position:3-184
               
               
               Cow position:chr24:28319313-28319120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):20, 37

               
               
               Conread position:3-198
               
               
               Cow position:chr24:33372457-33372654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 59

               
               
               Conread position:3-200
               
               
               Cow position:chr24:27748544-27748746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):18, 49

               
               
               Conread position:3-201
               
               
               Cow position:chr24:7777717-7777523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:3-202
               
               
               Cow position:chr24:31816475-31816685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:3-206
               
               
               Cow position:chr24:21519333-21519538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):22, 45

               
               
               Conread position:3-214
               
               
               Cow position:chr24:6912465-6912245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):38, 10

               
               
               Conread position:5-144
               
               
               Cow position:chr24:40823989-40824131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 48

               
               
               Conread position:5-175
               
               
               Cow position:chr24:8886813-8886990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-178
               
               
               Cow position:chr24:4724878-4725051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 32

               
               
               Conread position:5-178
               
               
               Cow position:chr24:29170872-29171044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:5-179
               
               
               Cow position:chr24:17752210-17752029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):41, 170

               
               
               Conread position:5-179
               
               
               Cow position:chr24:19736432-19736251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 177

               
               
               Conread position:5-183
               
               
               Cow position:chr24:31324185-31324372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):45, 152

               
               
               Conread position:5-188
               
               
               Cow position:chr24:10299984-10300169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):41, 92

               
               
               Conread position:5-189
               
               
               Cow position:chr24:28553649-28553472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):49, 89

               
               
               Conread position:5-189
               
               
               Cow position:chr24:35576630-35576446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):41, 147

               
               
               Conread position:5-189
               
               
               Cow position:chr24:39911134-39910940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):52, 164

               
               
               Conread position:5-192
               
               
               Cow position:chr24:29389144-29389329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):74, 38

               
               
               Conread position:5-195
               
               
               Cow position:chr24:16895227-16895038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 90

               
               
               Conread position:5-195
               
               
               Cow position:chr24:42825591-42825405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:5-196
               
               
               Cow position:chr24:11840092-11840286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):44, 170

               
               
               Conread position:5-198
               
               
               Cow position:chr24:15861697-15861491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 12

               
               
               Conread position:5-198
               
               
               Cow position:chr24:16509874-16510080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr24:17104669-17104467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr24:28600536-28600328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:5-200
               
               
               Cow position:chr24:17955538-17955340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr24:19535351-19535150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr24:28062855-28063053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):51, 22

               
               
               Conread position:5-201
               
               
               Cow position:chr24:29679406-29679205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):44, 109

               
               
               Conread position:5-201
               
               
               Cow position:chr24:32190968-32191161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):80, 33

               
               
               Conread position:5-201
               
               
               Cow position:chr24:39523544-39523343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-204
               
               
               Cow position:chr24:3493789-3493993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-206
               
               
               Cow position:chr24:26554695-26554486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):40, 18

               
               
               Conread position:5-206
               
               
               Cow position:chr24:28342253-28342469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):14, 35

               
               
               Conread position:5-206
               
               
               Cow position:chr24:36711104-36711305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):85, 37

               
               
               Conread position:5-207
               
               
               Cow position:chr24:27906341-27906550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):48, 165

               
               
               Conread position:5-207
               
               
               Cow position:chr24:30235770-30235981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 187

               
               
               Conread position:5-207
               
               
               Cow position:chr24:44987475-44987263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-209
               
               
               Cow position:chr24:32204891-32204681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):46, 33

               
               
               Conread position:5-209
               
               
               Cow position:chr24:33944306-33944515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):38, 62

               
               
               Conread position:5-209
               
               
               Cow position:chr24:34008673-34008461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):46, 196

               
               
               Conread position:5-209
               
               
               Cow position:chr24:42103278-42103473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):41, 92

               
               
               Conread position:5-212
               
               
               Cow position:chr24:18741667-18741455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-213
               
               
               Cow position:chr24:40130030-40130247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-214
               
               
               Cow position:chr24:41405800-41406013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):90, 38

               
               
               Conread position:5-215
               
               
               Cow position:chr24:19466018-19465800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):32, 170

               
               
               Conread position:5-220
               
               
               Cow position:chr24:19769391-19769618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):44, 199

               
               
               Conread position:5-220
               
               
               Cow position:chr24:37395306-37395091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):41, 175

               
               
               Conread position:5-222
               
               
               Cow position:chr24:24662227-24662002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:5-228
               
               
               Cow position:chr24:35150425-35150652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):41, 103

               
               
               Conread position:5-232
               
               
               Cow position:chr24:32070870-32071103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):74, 30

               
               
               Conread position:5-267
               
               
               Cow position:chr24:18331625-18331882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):59, 32

               
               
               Conread position:5-287
               
               
               Cow position:chr24:33465709-33465437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 38

               
               
               Conread position:5-304
               
               
               Cow position:chr24:15373310-15373603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:220
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):47, 181

               
               
               Conread position:5-304
               
               
               Cow position:chr24:28289346-28289057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:223
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):88, 52

               
               
               Conread position:5-304
               
               
               Cow position:chr24:39905547-39905251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:5-307
               
               
               Cow position:chr24:11119188-11119472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):74, 38

               
               
               Conread position:5-307
               
               
               Cow position:chr24:30308654-30308348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):37, 154

               
               
               Conread position:5-309
               
               
               Cow position:chr24:18614902-18615196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:231
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):50, 154

               
               
               Conread position:5-310
               
               
               Cow position:chr24:14648447-14648143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):88, 31

               
               
               Conread position:5-311
               
               
               Cow position:chr24:5683180-5683491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 139

               
               
               Conread position:5-311
               
               
               Cow position:chr24:6450400-6450691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):42, 108

               
               
               Conread position:6-194
               
               
               Cow position:chr24:20807439-20807633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):42, 129

               
               
               Conread position:6-201
               
               
               Cow position:chr24:2402464-2402264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):49, 171

               
               
               Conread position:6-209
               
               
               Cow position:chr24:34742656-34742865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):40, 193

               
               
               Conread position:6-217
               
               
               Cow position:chr24:28327182-28326960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):38, 186

               
               
               Conread position:6-311
               
               
               Cow position:chr24:40850068-40850370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):15, 9

               
               
               Conread position:7-176
               
               
               Cow position:chr24:7046843-7046669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:7-184
               
               
               Cow position:chr24:27418196-27418015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):50, 92

               
               
               Conread position:7-189
               
               
               Cow position:chr24:34390190-34390370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):14, 87

               
               
               Conread position:7-189
               
               
               Cow position:chr24:34396269-34396086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 36

               
               
               Conread position:7-201
               
               
               Cow position:chr24:19637489-19637695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):56, 35

               
               
               Conread position:7-230
               
               
               Cow position:chr24:18970602-18970374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):45, 203

               
               
               Conread position:9-188
               
               
               Cow position:chr24:11887063-11887250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):13, 31

               
               
               Conread position:12-189
               
               
               Cow position:chr24:38811561-38811377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):41, 25

               
               
               Conread position:12-189
               
               
               Cow position:chr24:43200369-43200182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):32, 105

               
               
               Conread position:12-209
               
               
               Cow position:chr24:38006798-38006605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):10, 32

               
               
               Conread position:13-204
               
               
               Cow position:chr24:24532087-24532283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):10, 79

               
               
               Conread position:13-204
               
               
               Cow position:chr24:27844619-27844421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):41, 177

               
               
               Conread position:14-214
               
               
               Cow position:chr24:20225656-20225857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):77, 48

               
               
               Conread position:15-184
               
               
               Cow position:chr24:28990475-28990648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 166

               
               
               Conread position:15-201
               
               
               Cow position:chr24:14550705-14550899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):22, 94

               
               
               Conread position:15-204
               
               
               Cow position:chr24:28699963-28700160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):48, 35

               
               
               Conread position:16-188
               
               
               Cow position:chr24:22647424-22647249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):60, 34

               
               
               Conread position:16-197
               
               
               Cow position:chr24:17434531-17434712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):94, 84

               
               
               Conread position:17-201
               
               
               Cow position:chr24:31159536-31159721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 85

               
               
               Conread position:19-198
               
               
               Cow position:chr24:32124723-32124541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):30, 67

               
               
               Conread position:19-207
               
               
               Cow position:chr24:2992960-2992771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):44, 7

               
               
               Conread position:20-149
               
               
               Cow position:chr24:26787769-26787902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:20-167
               
               
               Cow position:chr24:3160753-3160903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:20-174
               
               
               Cow position:chr24:23616615-23616776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):35, 18

               
               
               Conread position:20-177
               
               
               Cow position:chr24:32370000-32369833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:20-189
               
               
               Cow position:chr24:34496036-34496218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:20-192
               
               
               Cow position:chr24:16268210-16268032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:20-200
               
               
               Cow position:chr24:32054578-32054765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):33, 132

               
               
               Conread position:20-201
               
               
               Cow position:chr24:18017146-18017333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-201
               
               
               Cow position:chr24:40389525-40389709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):33, 134

               
               
               Conread position:20-204
               
               
               Cow position:chr24:30229389-30229586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-205
               
               
               Cow position:chr24:16645405-16645209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr24:352687-352495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):27, 110

               
               
               Conread position:20-207
               
               
               Cow position:chr24:22079380-22079572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 112

               
               
               Conread position:20-207
               
               
               Cow position:chr24:27149314-27149495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:20-208
               
               
               Cow position:chr24:30484032-30483828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:20-215
               
               
               Cow position:chr24:12851634-12851823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):73, 56

               
               
               Conread position:20-216
               
               
               Cow position:chr24:27039965-27040166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):26, 54

               
               
               Conread position:20-330
               
               
               Cow position:chr24:16118283-16118603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:228
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):73, 30

               
               
               Conread position:21-189
               
               
               Cow position:chr24:22999930-23000108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):22, 93

               
               
               Conread position:21-207
               
               
               Cow position:chr24:18810762-18810943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):28, 76

               
               
               Conread position:21-208
               
               
               Cow position:chr24:6151713-6151903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 22

               
               
               Conread position:22-207
               
               
               Cow position:chr24:12200492-12200297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:22-214
               
               
               Cow position:chr24:27284740-27284934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):30, 92

               
               
               Conread position:22-259
               
               
               Cow position:chr24:27349260-27349004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:24-148
               
               
               Cow position:chr24:40837699-40837825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 64

               
               
               Conread position:24-187
               
               
               Cow position:chr24:19623780-19623947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:24-207
               
               
               Cow position:chr24:42862545-42862734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):27, 133

               
               
               Conread position:25-196
               
               
               Cow position:chr24:27202013-27202189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):34, 8

               
               
               Conread position:27-189
               
               
               Cow position:chr24:6742150-6742315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):5, 20

               
               
               Conread position:34-218
               
               
               Cow position:chr24:11028754-11028568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):20, 57

               
               
               Conread position:35-198
               
               
               Cow position:chr24:28042910-28043078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:35-304
               
               
               Cow position:chr24:11007397-11007683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):58, 22

               
               
               Conread position:36-197
               
               
               Cow position:chr24:31812127-31812292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 26

               
               
               Conread position:36-296
               
               
               Cow position:chr24:39791479-39791730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):57, 26

               
               
               Conread position:36-304
               
               
               Cow position:chr24:34533051-34533312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):19, 58

               
               
               Conread position:37-175
               
               
               Cow position:chr24:26001326-26001467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):54, 25

               
               
               Conread position:37-187
               
               
               Cow position:chr24:34272743-34272902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:37-196
               
               
               Cow position:chr24:36286509-36286668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):51, 145

               
               
               Conread position:37-198
               
               
               Cow position:chr24:5360657-5360819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):56, 75

               
               
               Conread position:37-204
               
               
               Cow position:chr24:390042-390212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:38-207
               
               
               Cow position:chr24:26880694-26880864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):55, 15

               
               
               Conread position:39-209
               
               
               Cow position:chr24:28470738-28470566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):54, 17

               
               
               Conread position:41-312
               
               
               Cow position:chr24:12889988-12889711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):50, 16

               
               
               Conread position:42-317
               
               
               Cow position:chr24:40404866-40404595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):10, 69

               
               
               Conread position:43-205
               
               
               Cow position:chr24:17375582-17375747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 141

               
               
               Conread position:43-311
               
               
               Cow position:chr24:18328528-18328275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 69

               
               
               Conread position:45-241
               
               
               Cow position:chr24:42981812-42981618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):48, 19

               
               
               Conread position:46-310
               
               
               Cow position:chr24:18313993-18313736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):39, 26

               
               
               Conread position:50-204
               
               
               Cow position:chr24:19186893-19187044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):60, 43

               
               
               Conread position:50-205
               
               
               Cow position:chr24:26848777-26848624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):37, 13

               
               
               Conread position:51-304
               
               
               Cow position:chr24:40983084-40983333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):42, 13

               
               
               Conread position:51-320
               
               
               Cow position:chr24:34555988-34556252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):41, 103

               
               
               Conread position:53-201
               
               
               Cow position:chr24:22133126-22133277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):40, 9

               
               
               Conread position:54-306
               
               
               Cow position:chr24:15263831-15264083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):39, 6

               
               
               Conread position:57-174
               
               
               Cow position:chr24:29538553-29538427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-201
               
               
               Cow position:chr24:15347547-15347696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):36, 115

               
               
               Conread position:57-206
               
               
               Cow position:chr24:27448602-27448756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):32, 113

               
               
               Conread position:57-215
               
               
               Cow position:chr24:18750662-18750825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):36, 20

               
               
               Conread position:57-286
               
               
               Cow position:chr24:34465548-34465336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):36, 136

               
               
               Conread position:57-312
               
               
               Cow position:chr24:20969704-20969463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):47, 125

               
               
               Conread position:58-201
               
               
               Cow position:chr24:41412335-41412191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:61-188
               
               
               Cow position:chr24:2730650-2730523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):30, 40

               
               
               Conread position:61-209
               
               
               Cow position:chr24:18668540-18668690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):29, 63

               
               
               Conread position:62-201
               
               
               Cow position:chr24:17294227-17294092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):48, 31

               
               
               Conread position:62-201
               
               
               Cow position:chr24:36303354-36303209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:62-207
               
               
               Cow position:chr24:13888667-13888814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:62-222
               
               
               Cow position:chr24:7390370-7390211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):31, 51

               
               
               Conread position:63-204
               
               
               Cow position:chr24:32891080-32890935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:63-208
               
               
               Cow position:chr24:5143996-5143847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):5, 136

               
               
               Conread position:66-207
               
               
               Cow position:chr24:32230541-32230393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:67-187
               
               
               Cow position:chr24:17689643-17689520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 101

               
               
               Conread position:68-201
               
               
               Cow position:chr24:41566126-41565997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):37, 25

               
               
               Conread position:68-296
               
               
               Cow position:chr24:14786348-14786583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:69-188
               
               
               Cow position:chr24:5152493-5152616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:72-196
               
               
               Cow position:chr24:21623198-21623323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:75-198
               
               
               Cow position:chr24:34302060-34301936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):24, 44

               
               
               Conread position:78-223
               
               
               Cow position:chr24:22235448-22235595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:78-311
               
               
               Cow position:chr24:19779371-19779158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):10, 51

               
               
               Conread position:79-204
               
               
               Cow position:chr24:31383100-31383224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):31, 23

               
               
               Conread position:79-207
               
               
               Cow position:chr24:18874839-18874711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):8, 84

               
               
               Conread position:79-311
               
               
               Cow position:chr24:30202806-30203035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:183
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):8, 89

               
               
               Conread position:82-198
               
               
               Cow position:chr24:7113207-7113325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:85-209
               
               
               Cow position:chr24:4635179-4635054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:85-209
               
               
               Cow position:chr24:39218563-39218436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:85-300
               
               
               Cow position:chr24:256015-256229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:167
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):25, 155

               
               
               Conread position:85-304
               
               
               Cow position:chr24:1831573-1831360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):118, 23

               
               
               Conread position:86-206
               
               
               Cow position:chr24:29013956-29014077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-207
               
               
               Cow position:chr24:161993-162115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:86-209
               
               
               Cow position:chr24:27553085-27553208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):23, 57

               
               
               Conread position:86-209
               
               
               Cow position:chr24:29677926-29677801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-311
               
               
               Cow position:chr24:873438-873665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):23, 110

               
               
               Conread position:87-308
               
               
               Cow position:chr24:13058014-13058239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):98, 219

               
               
               Conread position:87-311
               
               
               Cow position:chr24:32818309-32818097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):168, 22

               
               
               Conread position:92-311
               
               
               Cow position:chr24:18811669-18811449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):103, 200

               
               
               Conread position:95-307
               
               
               Cow position:chr24:43024259-43024459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):15, 110

               
               
               Conread position:97-312
               
               
               Cow position:chr24:42430594-42430817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):9, 57

               
               
               Conread position:100-218
               
               
               Cow position:chr24:2353674-2353794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:108-222
               
               
               Cow position:chr24:10840907-10840793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:109-308
               
               
               Cow position:chr24:39345361-39345165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:112-195
               
               
               Cow position:chr24:27719510-27719427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:84
               
               
               Alignm identity:74
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:115-310
               
               
               Cow position:chr24:28186494-28186303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):76, 119

               
               
               Conread position:122-312
               
               
               Cow position:chr24:27168335-27168517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):38, 70

               
               
               Conread position:123-311
               
               
               Cow position:chr24:40185152-40185338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):76, 11

               
               
               Conread position:131-311
               
               
               Cow position:chr24:3152307-3152127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):63, 79

               
               
               Conread position:142-301
               
               
               Cow position:chr24:39259747-39259907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):117, 96

               
               
               Conread position:1-168
               
               
               Cow position:chr25:15377245-15377421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1-176
               
               
               Cow position:chr25:13294817-13294979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:1-183
               
               
               Cow position:chr25:23817921-23817731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):48, 12

               
               
               Conread position:1-189
               
               
               Cow position:chr25:10504418-10504225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):20, 109

               
               
               Conread position:1-190
               
               
               Cow position:chr25:8961687-8961887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):21, 101

               
               
               Conread position:1-197
               
               
               Cow position:chr25:14833745-14833539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 113

               
               
               Conread position:1-197
               
               
               Cow position:chr25:17704667-17704868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):62, 28

               
               
               Conread position:1-198
               
               
               Cow position:chr25:15714792-15714998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:1-200
               
               
               Cow position:chr25:20023470-20023259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:1-200
               
               
               Cow position:chr25:22178840-22179043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):22, 63

               
               
               Conread position:1-201
               
               
               Cow position:chr25:11315823-11316031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):24, 129

               
               
               Conread position:1-201
               
               
               Cow position:chr25:16921878-16921668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:1-201
               
               
               Cow position:chr25:24203080-24202882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:1-201
               
               
               Cow position:chr25:25716572-25716774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):45, 107

               
               
               Conread position:1-201
               
               
               Cow position:chr25:26700950-26701155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):21, 44

               
               
               Conread position:1-207
               
               
               Cow position:chr25:18202012-18201795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):18, 121

               
               
               Conread position:1-207
               
               
               Cow position:chr25:20008054-20008265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):21, 197

               
               
               Conread position:1-210
               
               
               Cow position:chr25:6683145-6682924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):21, 69

               
               
               Conread position:1-210
               
               
               Cow position:chr25:26089895-26089673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):52, 79

               
               
               Conread position:1-218
               
               
               Cow position:chr25:23779402-23779189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):20, 16

               
               
               Conread position:1-219
               
               
               Cow position:chr25:15254420-15254204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):21, 54

               
               
               Conread position:1-223
               
               
               Cow position:chr25:22531198-22531432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:1-223
               
               
               Cow position:chr25:26059424-26059634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):58, 36

               
               
               Conread position:1-234
               
               
               Cow position:chr25:36762026-36762266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):58, 42

               
               
               Conread position:1-248
               
               
               Cow position:chr25:35109343-35109093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):92, 8

               
               
               Conread position:1-275
               
               
               Cow position:chr25:21951041-21951329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):15, 255

               
               
               Conread position:1-304
               
               
               Cow position:chr25:34169867-34170166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):37, 223

               
               
               Conread position:1-310
               
               
               Cow position:chr25:20020079-20019774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):26, 105

               
               
               Conread position:3-177
               
               
               Cow position:chr25:18293679-18293849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:3-179
               
               
               Cow position:chr25:5756613-5756790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):22, 55

               
               
               Conread position:3-192
               
               
               Cow position:chr25:22241894-22242082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):49, 22

               
               
               Conread position:3-209
               
               
               Cow position:chr25:33256278-33256492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):21, 14

               
               
               Conread position:3-298
               
               
               Cow position:chr25:35826365-35826071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):40, 202

               
               
               Conread position:4-204
               
               
               Cow position:chr25:38957885-38958086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):50, 34

               
               
               Conread position:4-304
               
               
               Cow position:chr25:36120427-36120727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:215
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):69, 39

               
               
               Conread position:4-311
               
               
               Cow position:chr25:23917768-23918068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):42, 24

               
               
               Conread position:5-164
               
               
               Cow position:chr25:9349355-9349193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:5-164
               
               
               Cow position:chr25:38425287-38425448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:5-175
               
               
               Cow position:chr25:6687872-6688047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):44, 105

               
               
               Conread position:5-176
               
               
               Cow position:chr25:14720671-14720847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 59

               
               
               Conread position:5-177
               
               
               Cow position:chr25:8346077-8345900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-183
               
               
               Cow position:chr25:24066734-24066556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 85

               
               
               Conread position:5-186
               
               
               Cow position:chr25:7799478-7799660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):94, 33

               
               
               Conread position:5-186
               
               
               Cow position:chr25:18564415-18564599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:5-186
               
               
               Cow position:chr25:30816811-30817002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-188
               
               
               Cow position:chr25:12840797-12840603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:5-188
               
               
               Cow position:chr25:22730754-22730943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):54, 136

               
               
               Conread position:5-188
               
               
               Cow position:chr25:26654835-26655022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):58, 101

               
               
               Conread position:5-190
               
               
               Cow position:chr25:20133387-20133198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:5-195
               
               
               Cow position:chr25:14513036-14513237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:5-195
               
               
               Cow position:chr25:36081802-36081998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):58, 38

               
               
               Conread position:5-196
               
               
               Cow position:chr25:433124-432925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:5-196
               
               
               Cow position:chr25:1763015-1763210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 86

               
               
               Conread position:5-196
               
               
               Cow position:chr25:10218122-10217926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-196
               
               
               Cow position:chr25:13325504-13325703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):46, 32

               
               
               Conread position:5-196
               
               
               Cow position:chr25:35052696-35052499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):58, 32

               
               
               Conread position:5-197
               
               
               Cow position:chr25:5920009-5920205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):41, 53

               
               
               Conread position:5-198
               
               
               Cow position:chr25:7216755-7216949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):41, 30

               
               
               Conread position:5-201
               
               
               Cow position:chr25:12305201-12305404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr25:28188021-28187817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-204
               
               
               Cow position:chr25:26087446-26087652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):43, 25

               
               
               Conread position:5-207
               
               
               Cow position:chr25:20069649-20069852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:5-209
               
               
               Cow position:chr25:9002601-9002805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):84, 27

               
               
               Conread position:5-209
               
               
               Cow position:chr25:12806969-12807174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):50, 30

               
               
               Conread position:5-209
               
               
               Cow position:chr25:13443488-13443276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):41, 70

               
               
               Conread position:5-209
               
               
               Cow position:chr25:23504972-23505186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 198

               
               
               Conread position:5-215
               
               
               Cow position:chr25:27801212-27801410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):86, 38

               
               
               Conread position:5-216
               
               
               Cow position:chr25:36872287-36872501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):74, 54

               
               
               Conread position:5-220
               
               
               Cow position:chr25:22751084-22750863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):11, 184

               
               
               Conread position:5-237
               
               
               Cow position:chr25:12252887-12252645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):47, 162

               
               
               Conread position:5-256
               
               
               Cow position:chr25:20447496-20447753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):78, 38

               
               
               Conread position:5-304
               
               
               Cow position:chr25:26051826-26052130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:221
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):58, 180

               
               
               Conread position:5-307
               
               
               Cow position:chr25:18905811-18906116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 192

               
               
               Conread position:5-310
               
               
               Cow position:chr25:22297093-22296810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):86, 105

               
               
               Conread position:5-311
               
               
               Cow position:chr25:7023091-7023389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):48, 32

               
               
               Conread position:6-188
               
               
               Cow position:chr25:61585-61765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):84, 45

               
               
               Conread position:6-201
               
               
               Cow position:chr25:13272493-13272696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):34, 192

               
               
               Conread position:6-204
               
               
               Cow position:chr25:9269274-9269474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):15, 28

               
               
               Conread position:7-212
               
               
               Cow position:chr25:11585444-11585657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:7-229
               
               
               Cow position:chr25:13621432-13621204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 146

               
               
               Conread position:7-230
               
               
               Cow position:chr25:14196787-14197019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):46, 154

               
               
               Conread position:8-309
               
               
               Cow position:chr25:22341454-22341762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):34, 133

               
               
               Conread position:13-201
               
               
               Cow position:chr25:11956735-11956933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):16, 50

               
               
               Conread position:14-307
               
               
               Cow position:chr25:22261368-22261084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:15-198
               
               
               Cow position:chr25:21893271-21893464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:15-201
               
               
               Cow position:chr25:23245067-23244875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 172

               
               
               Conread position:16-311
               
               
               Cow position:chr25:19478609-19478894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 147

               
               
               Conread position:17-198
               
               
               Cow position:chr25:16064827-16065017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):37, 26

               
               
               Conread position:19-186
               
               
               Cow position:chr25:10643370-10643197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 168

               
               
               Conread position:20-160
               
               
               Cow position:chr25:37594344-37594493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:20-186
               
               
               Cow position:chr25:17119685-17119855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):39, 7

               
               
               Conread position:20-190
               
               
               Cow position:chr25:15440836-15440665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):35, 146

               
               
               Conread position:20-196
               
               
               Cow position:chr25:1838178-1838363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):29, 18

               
               
               Conread position:20-197
               
               
               Cow position:chr25:26225085-26224905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):71, 23

               
               
               Conread position:20-198
               
               
               Cow position:chr25:13569230-13569051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 23

               
               
               Conread position:20-201
               
               
               Cow position:chr25:2499210-2499394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):28, 176

               
               
               Conread position:20-208
               
               
               Cow position:chr25:1824157-1823961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:20-209
               
               
               Cow position:chr25:33978275-33978088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):28, 71

               
               
               Conread position:20-209
               
               
               Cow position:chr25:36555749-36555552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:20-212
               
               
               Cow position:chr25:17658548-17658750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-212
               
               
               Cow position:chr25:30619004-30619202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:20-299
               
               
               Cow position:chr25:17144364-17144645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):23, 144

               
               
               Conread position:20-303
               
               
               Cow position:chr25:13672334-13672633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):26, 255

               
               
               Conread position:20-310
               
               
               Cow position:chr25:21894946-21894628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):32, 111

               
               
               Conread position:21-201
               
               
               Cow position:chr25:7581483-7581296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):72, 22

               
               
               Conread position:21-201
               
               
               Cow position:chr25:17474572-17474385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:21-240
               
               
               Cow position:chr25:34242156-34241936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):67, 11

               
               
               Conread position:21-292
               
               
               Cow position:chr25:13384395-13384671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):25, 106

               
               
               Conread position:21-311
               
               
               Cow position:chr25:38421607-38421910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):32, 14

               
               
               Conread position:22-188
               
               
               Cow position:chr25:18542007-18541831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:22-304
               
               
               Cow position:chr25:36019726-36019442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):33, 104

               
               
               Conread position:23-207
               
               
               Cow position:chr25:21501109-21500910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:23-209
               
               
               Cow position:chr25:16867183-16867376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):26, 176

               
               
               Conread position:24-196
               
               
               Cow position:chr25:33555552-33555728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):24, 107

               
               
               Conread position:25-214
               
               
               Cow position:chr25:18156341-18156149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 145

               
               
               Conread position:26-205
               
               
               Cow position:chr25:7726611-7726794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):37, 11

               
               
               Conread position:26-300
               
               
               Cow position:chr25:36017482-36017769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:220
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):20, 76

               
               
               Conread position:28-204
               
               
               Cow position:chr25:17403432-17403610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):36, 15

               
               
               Conread position:32-196
               
               
               Cow position:chr25:18760755-18760585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:34-189
               
               
               Cow position:chr25:30656685-30656533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):60, 9

               
               
               Conread position:35-201
               
               
               Cow position:chr25:18288808-18288641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):58, 15

               
               
               Conread position:36-196
               
               
               Cow position:chr25:5474271-5474107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:37-201
               
               
               Cow position:chr25:26072596-26072434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:37-201
               
               
               Cow position:chr25:31230277-31230120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:37-209
               
               
               Cow position:chr25:7673253-7673437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:37-210
               
               
               Cow position:chr25:22348502-22348326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:38-186
               
               
               Cow position:chr25:40321328-40321176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):20, 137

               
               
               Conread position:38-188
               
               
               Cow position:chr25:33457693-33457847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:38-195
               
               
               Cow position:chr25:36840357-36840517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):51, 98

               
               
               Conread position:38-204
               
               
               Cow position:chr25:1840285-1840455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):13, 25

               
               
               Conread position:38-209
               
               
               Cow position:chr25:9939295-9939127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):49, 72

               
               
               Conread position:38-214
               
               
               Cow position:chr25:28597650-28597469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):55, 24

               
               
               Conread position:39-201
               
               
               Cow position:chr25:18929230-18929064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:40-209
               
               
               Cow position:chr25:31762645-31762471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:41-207
               
               
               Cow position:chr25:33311364-33311192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:41-310
               
               
               Cow position:chr25:28666409-28666673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):48, 112

               
               
               Conread position:44-231
               
               
               Cow position:chr25:20862426-20862609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:45-201
               
               
               Cow position:chr25:6474118-6473959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):48, 12

               
               
               Conread position:46-186
               
               
               Cow position:chr25:35090605-35090456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):47, 109

               
               
               Conread position:46-219
               
               
               Cow position:chr25:20461077-20461247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):64, 16

               
               
               Conread position:46-304
               
               
               Cow position:chr25:26160935-26161199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:201
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):47, 11

               
               
               Conread position:47-172
               
               
               Cow position:chr25:10364364-10364238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):44, 106

               
               
               Conread position:47-207
               
               
               Cow position:chr25:17918943-17919109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:47-208
               
               
               Cow position:chr25:9843147-9843311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 17

               
               
               Conread position:49-207
               
               
               Cow position:chr25:31514153-31514315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:50-205
               
               
               Cow position:chr25:9615810-9615969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:50-208
               
               
               Cow position:chr25:40931251-40931408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):60, 12

               
               
               Conread position:51-176
               
               
               Cow position:chr25:4221629-4221500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:51-213
               
               
               Cow position:chr25:4009067-4009233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:56-200
               
               
               Cow position:chr25:33101626-33101478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:57-188
               
               
               Cow position:chr25:21266971-21267102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 87

               
               
               Conread position:57-198
               
               
               Cow position:chr25:7277338-7277201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):53, 30

               
               
               Conread position:57-235
               
               
               Cow position:chr25:10359606-10359801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):22, 170

               
               
               Conread position:57-306
               
               
               Cow position:chr25:22520317-22520558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):29, 146

               
               
               Conread position:57-312
               
               
               Cow position:chr25:15218116-15218363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 33

               
               
               Conread position:57-316
               
               
               Cow position:chr25:13503413-13503662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):36, 153

               
               
               Conread position:59-189
               
               
               Cow position:chr25:10791832-10791699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):28, 91

               
               
               Conread position:61-201
               
               
               Cow position:chr25:7380855-7380712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):32, 123

               
               
               Conread position:62-206
               
               
               Cow position:chr25:3744760-3744613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):31, 122

               
               
               Conread position:62-208
               
               
               Cow position:chr25:40904845-40904695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:64-201
               
               
               Cow position:chr25:36873069-36872928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:66-207
               
               
               Cow position:chr25:5807934-5808079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:67-237
               
               
               Cow position:chr25:13551075-13550895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:70-192
               
               
               Cow position:chr25:23998931-23998805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:72-196
               
               
               Cow position:chr25:14164195-14164318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):27, 7

               
               
               Conread position:72-237
               
               
               Cow position:chr25:14224598-14224433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):7, 51

               
               
               Conread position:75-204
               
               
               Cow position:chr25:32745338-32745469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:78-198
               
               
               Cow position:chr25:18646588-18646710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:79-207
               
               
               Cow position:chr25:36369823-36369952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):8, 62

               
               
               Conread position:79-207
               
               
               Cow position:chr25:36375514-36375643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):8, 62

               
               
               Conread position:79-215
               
               
               Cow position:chr25:10138322-10138459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:82-201
               
               
               Cow position:chr25:18491045-18491166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:82-207
               
               
               Cow position:chr25:7311388-7311262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:82-214
               
               
               Cow position:chr25:23323497-23323629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):5, 111

               
               
               Conread position:82-223
               
               
               Cow position:chr25:23016027-23016171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):5, 142

               
               
               Conread position:83-321
               
               
               Cow position:chr25:13805022-13805242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):30, 98

               
               
               Conread position:84-196
               
               
               Cow position:chr25:7330612-7330727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):23, 100

               
               
               Conread position:86-207
               
               
               Cow position:chr25:5791705-5791582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-222
               
               
               Cow position:chr25:11272387-11272521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:87-207
               
               
               Cow position:chr25:18551321-18551202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 61

               
               
               Conread position:87-216
               
               
               Cow position:chr25:7403328-7403200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):23, 109

               
               
               Conread position:88-300
               
               
               Cow position:chr25:7061242-7061038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):21, 103

               
               
               Conread position:89-304
               
               
               Cow position:chr25:9642516-9642733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):21, 189

               
               
               Conread position:92-300
               
               
               Cow position:chr25:36136122-36135921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):18, 63

               
               
               Conread position:92-305
               
               
               Cow position:chr25:21284894-21285099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):18, 89

               
               
               Conread position:92-311
               
               
               Cow position:chr25:27520740-27520540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):18, 101

               
               
               Conread position:93-204
               
               
               Cow position:chr25:33100594-33100706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:93-333
               
               
               Cow position:chr25:35624858-35624631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):230, 11

               
               
               Conread position:100-201
               
               
               Cow position:chr25:11855523-11855422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:86
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):10, 23

               
               
               Conread position:104-311
               
               
               Cow position:chr25:25828739-25828947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:160
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:109-213
               
               
               Cow position:chr25:31344059-31343956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:109-214
               
               
               Cow position:chr25:8410998-8410893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:109-308
               
               
               Cow position:chr25:12899763-12899967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:109-310
               
               
               Cow position:chr25:12509797-12509606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 86

               
               
               Conread position:113-292
               
               
               Cow position:chr25:17775037-17775216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):121, 126

               
               
               Conread position:157-308
               
               
               Cow position:chr25:11841356-11841500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):100, 5

               
               
               Conread position:187-310
               
               
               Cow position:chr25:28186365-28186247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:192-310
               
               
               Cow position:chr25:13653983-13654099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:1-176
               
               
               Cow position:chr26:1325707-1325879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):89, 40

               
               
               Conread position:1-179
               
               
               Cow position:chr26:15200581-15200391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):18, 122

               
               
               Conread position:1-179
               
               
               Cow position:chr26:26466789-26466607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 108

               
               
               Conread position:1-183
               
               
               Cow position:chr26:12238090-12237900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1-183
               
               
               Cow position:chr26:34108695-34108886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):18, 187

               
               
               Conread position:1-187
               
               
               Cow position:chr26:32058588-32058779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):41, 110

               
               
               Conread position:1-189
               
               
               Cow position:chr26:6794083-6794285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-197
               
               
               Cow position:chr26:22349074-22348869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:1-201
               
               
               Cow position:chr26:6714361-6714155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:1-204
               
               
               Cow position:chr26:17057621-17057827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):51, 34

               
               
               Conread position:1-207
               
               
               Cow position:chr26:34027106-34026884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:1-209
               
               
               Cow position:chr26:32601292-32601505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):57, 70

               
               
               Conread position:1-215
               
               
               Cow position:chr26:10965657-10965438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):24, 190

               
               
               Conread position:1-312
               
               
               Cow position:chr26:15211740-15212066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 43

               
               
               Conread position:2-202
               
               
               Cow position:chr26:33202128-33201922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:3-158
               
               
               Cow position:chr26:32670557-32670392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-188
               
               
               Cow position:chr26:29889563-29889380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):12, 46

               
               
               Conread position:3-293
               
               
               Cow position:chr26:32381465-32381732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):18, 52

               
               
               Conread position:4-156
               
               
               Cow position:chr26:22603096-22602936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:4-198
               
               
               Cow position:chr26:8352905-8353113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:4-209
               
               
               Cow position:chr26:9839598-9839393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):18, 55

               
               
               Conread position:4-308
               
               
               Cow position:chr26:7315161-7314873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:224
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):42, 54

               
               
               Conread position:4-311
               
               
               Cow position:chr26:4807505-4807798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):87, 39

               
               
               Conread position:5-174
               
               
               Cow position:chr26:30568713-30568543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):58, 82

               
               
               Conread position:5-179
               
               
               Cow position:chr26:18877013-18876837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):79, 51

               
               
               Conread position:5-184
               
               
               Cow position:chr26:16549929-16550118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:5-187
               
               
               Cow position:chr26:33567101-33566911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr26:12893481-12893293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):47, 151

               
               
               Conread position:5-190
               
               
               Cow position:chr26:4371590-4371779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-190
               
               
               Cow position:chr26:8642889-8643079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):45, 94

               
               
               Conread position:5-195
               
               
               Cow position:chr26:35449004-35449204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-196
               
               
               Cow position:chr26:10764159-10764353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:5-196
               
               
               Cow position:chr26:33253375-33253174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:160
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:5-197
               
               
               Cow position:chr26:32120585-32120769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:5-197
               
               
               Cow position:chr26:34060278-34060476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:5-200
               
               
               Cow position:chr26:9604507-9604706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:5-200
               
               
               Cow position:chr26:21243046-21243239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):54, 91

               
               
               Conread position:5-200
               
               
               Cow position:chr26:22249533-22249337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):41, 53

               
               
               Conread position:5-201
               
               
               Cow position:chr26:20291748-20291545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):45, 32

               
               
               Conread position:5-205
               
               
               Cow position:chr26:23097239-23097043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 89

               
               
               Conread position:5-206
               
               
               Cow position:chr26:7687296-7687094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:5-207
               
               
               Cow position:chr26:31903110-31903319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):52, 33

               
               
               Conread position:5-208
               
               
               Cow position:chr26:32836185-32836396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:5-209
               
               
               Cow position:chr26:14175223-14175436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):17, 35

               
               
               Conread position:5-209
               
               
               Cow position:chr26:24240620-24240834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):46, 88

               
               
               Conread position:5-209
               
               
               Cow position:chr26:32834629-32834426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):82, 21

               
               
               Conread position:5-216
               
               
               Cow position:chr26:35686342-35686557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 30

               
               
               Conread position:5-221
               
               
               Cow position:chr26:32776563-32776348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):46, 92

               
               
               Conread position:5-223
               
               
               Cow position:chr26:8700103-8699886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):35, 179

               
               
               Conread position:5-223
               
               
               Cow position:chr26:23599859-23599633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 14

               
               
               Conread position:5-242
               
               
               Cow position:chr26:5246535-5246291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):48, 192

               
               
               Conread position:5-304
               
               
               Cow position:chr26:11263586-11263899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:5-304
               
               
               Cow position:chr26:31605350-31605648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):37, 91

               
               
               Conread position:5-308
               
               
               Cow position:chr26:6864960-6865275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 197

               
               
               Conread position:5-308
               
               
               Cow position:chr26:13021201-13020898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):54, 212

               
               
               Conread position:5-319
               
               
               Cow position:chr26:19774357-19774045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 184

               
               
               Conread position:5-322
               
               
               Cow position:chr26:2739514-2739188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):44, 30

               
               
               Conread position:6-142
               
               
               Cow position:chr26:21992048-21992190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):52, 30

               
               
               Conread position:6-176
               
               
               Cow position:chr26:34106342-34106515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):16, 107

               
               
               Conread position:6-193
               
               
               Cow position:chr26:12145177-12144979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):16, 34

               
               
               Conread position:6-231
               
               
               Cow position:chr26:22152171-22152404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):48, 199

               
               
               Conread position:7-196
               
               
               Cow position:chr26:8811076-8811269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):45, 36

               
               
               Conread position:7-226
               
               
               Cow position:chr26:22354360-22354587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:7-304
               
               
               Cow position:chr26:26294250-26293964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):41, 88

               
               
               Conread position:10-214
               
               
               Cow position:chr26:24453959-24453749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):12, 106

               
               
               Conread position:12-304
               
               
               Cow position:chr26:30254678-30254402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):81, 45

               
               
               Conread position:12-311
               
               
               Cow position:chr26:12964747-12964459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):10, 28

               
               
               Conread position:13-235
               
               
               Cow position:chr26:9104331-9104100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):13, 32

               
               
               Conread position:14-207
               
               
               Cow position:chr26:829756-829958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:15-201
               
               
               Cow position:chr26:28423240-28423433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:15-207
               
               
               Cow position:chr26:32830037-32830233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):23, 44

               
               
               Conread position:15-214
               
               
               Cow position:chr26:33392347-33392554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:19-195
               
               
               Cow position:chr26:23671372-23671556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 170

               
               
               Conread position:19-207
               
               
               Cow position:chr26:25663581-25663399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):74, 26

               
               
               Conread position:20-188
               
               
               Cow position:chr26:20769808-20769985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:20-189
               
               
               Cow position:chr26:613718-613538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:20-189
               
               
               Cow position:chr26:3706754-3706926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):71, 129

               
               
               Conread position:20-196
               
               
               Cow position:chr26:11538490-11538674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:20-196
               
               
               Cow position:chr26:33011708-33011529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):31, 106

               
               
               Conread position:20-197
               
               
               Cow position:chr26:14951189-14951000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:20-197
               
               
               Cow position:chr26:25074677-25074859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):32, 179

               
               
               Conread position:20-198
               
               
               Cow position:chr26:23624086-23623899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):26, 6

               
               
               Conread position:20-201
               
               
               Cow position:chr26:4854498-4854691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):26, 131

               
               
               Conread position:20-201
               
               
               Cow position:chr26:5168351-5168540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):31, 90

               
               
               Conread position:20-201
               
               
               Cow position:chr26:16921898-16922085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):38, 113

               
               
               Conread position:20-204
               
               
               Cow position:chr26:19459644-19459844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr26:31633688-31633881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr26:33475648-33475849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:20-301
               
               
               Cow position:chr26:14578286-14578569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):43, 23

               
               
               Conread position:20-309
               
               
               Cow position:chr26:13818382-13818668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):29, 153

               
               
               Conread position:21-185
               
               
               Cow position:chr26:29778884-29779053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 12

               
               
               Conread position:21-201
               
               
               Cow position:chr26:13828038-13828211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:21-204
               
               
               Cow position:chr26:25526207-25526399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:29-172
               
               
               Cow position:chr26:17187065-17186920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):34, 14

               
               
               Conread position:30-198
               
               
               Cow position:chr26:29664185-29664013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):49, 16

               
               
               Conread position:32-208
               
               
               Cow position:chr26:9099561-9099377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:32-311
               
               
               Cow position:chr26:32571267-32571543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):61, 163

               
               
               Conread position:33-183
               
               
               Cow position:chr26:34580775-34580930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):26, 151

               
               
               Conread position:35-196
               
               
               Cow position:chr26:8478895-8478730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):22, 71

               
               
               Conread position:35-201
               
               
               Cow position:chr26:34314670-34314837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):58, 15

               
               
               Conread position:36-192
               
               
               Cow position:chr26:12940379-12940537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):63, 30

               
               
               Conread position:36-304
               
               
               Cow position:chr26:34154112-34154385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):49, 224

               
               
               Conread position:38-207
               
               
               Cow position:chr26:20260568-20260731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):79, 41

               
               
               Conread position:39-215
               
               
               Cow position:chr26:16435675-16435494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:42-207
               
               
               Cow position:chr26:11672281-11672450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:43-173
               
               
               Cow position:chr26:19447464-19447333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 49

               
               
               Conread position:46-189
               
               
               Cow position:chr26:28374458-28374308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:46-204
               
               
               Cow position:chr26:22892456-22892295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:46-288
               
               
               Cow position:chr26:6337781-6338015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):65, 16

               
               
               Conread position:46-304
               
               
               Cow position:chr26:677991-677745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:47-195
               
               
               Cow position:chr26:4363286-4363441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):12, 115

               
               
               Conread position:50-201
               
               
               Cow position:chr26:13292512-13292668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:56-207
               
               
               Cow position:chr26:19671476-19671627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):35, 73

               
               
               Conread position:57-184
               
               
               Cow position:chr26:7224343-7224212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 127

               
               
               Conread position:57-188
               
               
               Cow position:chr26:32655610-32655474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:57-207
               
               
               Cow position:chr26:19145901-19146053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:57-213
               
               
               Cow position:chr26:16594500-16594343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 55

               
               
               Conread position:57-223
               
               
               Cow position:chr26:10974130-10974299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 116

               
               
               Conread position:57-233
               
               
               Cow position:chr26:10938971-10939146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:58-207
               
               
               Cow position:chr26:17398576-17398729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:59-308
               
               
               Cow position:chr26:33527013-33526780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):36, 46

               
               
               Conread position:60-201
               
               
               Cow position:chr26:9501711-9501855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:62-189
               
               
               Cow position:chr26:18381318-18381447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):22, 119

               
               
               Conread position:62-223
               
               
               Cow position:chr26:7157602-7157436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:62-223
               
               
               Cow position:chr26:7212582-7212416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):32, 103

               
               
               Conread position:64-201
               
               
               Cow position:chr26:16796200-16796065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):24, 45

               
               
               Conread position:66-196
               
               
               Cow position:chr26:5406987-5407121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:66-221
               
               
               Cow position:chr26:18137278-18137439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:71-188
               
               
               Cow position:chr26:28446596-28446717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:71-201
               
               
               Cow position:chr26:32353707-32353573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:72-198
               
               
               Cow position:chr26:11884317-11884444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 40

               
               
               Conread position:72-206
               
               
               Cow position:chr26:7183983-7183845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:78-196
               
               
               Cow position:chr26:21930360-21930480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:79-201
               
               
               Cow position:chr26:28202736-28202612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-309
               
               
               Cow position:chr26:15599503-15599271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 90

               
               
               Conread position:80-215
               
               
               Cow position:chr26:6823185-6823316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):33, 5

               
               
               Conread position:82-204
               
               
               Cow position:chr26:12807273-12807151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 84

               
               
               Conread position:82-223
               
               
               Cow position:chr26:27760883-27760740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):5, 95

               
               
               Conread position:82-312
               
               
               Cow position:chr26:32825974-32825760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):5, 86

               
               
               Conread position:85-308
               
               
               Cow position:chr26:28759790-28759569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):113, 155

               
               
               Conread position:86-288
               
               
               Cow position:chr26:32565480-32565681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):24, 107

               
               
               Conread position:90-207
               
               
               Cow position:chr26:26245136-26245019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):6, 63

               
               
               Conread position:92-208
               
               
               Cow position:chr26:7153906-7154020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 61

               
               
               Conread position:95-304
               
               
               Cow position:chr26:33691448-33691249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):15, 97

               
               
               Conread position:100-207
               
               
               Cow position:chr26:27482521-27482413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:87
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:128-308
               
               
               Cow position:chr26:32068739-32068917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):115, 47

               
               
               Conread position:130-311
               
               
               Cow position:chr26:15112172-15111985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:1-139
               
               
               Cow position:chr27:12429441-12429295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):18, 39

               
               
               Conread position:1-156
               
               
               Cow position:chr27:4858605-4858768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1-165
               
               
               Cow position:chr27:1058642-1058813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 98

               
               
               Conread position:1-184
               
               
               Cow position:chr27:8062319-8062506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):46, 169

               
               
               Conread position:1-184
               
               
               Cow position:chr27:18507683-18507493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 38

               
               
               Conread position:1-186
               
               
               Cow position:chr27:7615056-7615239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):52, 37

               
               
               Conread position:1-186
               
               
               Cow position:chr27:13252041-13251857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):111, 49

               
               
               Conread position:1-188
               
               
               Cow position:chr27:26188862-26188669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):57, 9

               
               
               Conread position:1-198
               
               
               Cow position:chr27:7412418-7412222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):84, 36

               
               
               Conread position:1-198
               
               
               Cow position:chr27:28260504-28260706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):45, 104

               
               
               Conread position:1-200
               
               
               Cow position:chr27:29431493-29431296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 58

               
               
               Conread position:1-201
               
               
               Cow position:chr27:2957442-2957240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):13, 114

               
               
               Conread position:1-201
               
               
               Cow position:chr27:24227757-24227973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 87

               
               
               Conread position:1-206
               
               
               Cow position:chr27:22513640-22513857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr27:5553506-5553290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-208
               
               
               Cow position:chr27:22440173-22439961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):62, 37

               
               
               Conread position:1-214
               
               
               Cow position:chr27:24240387-24240173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):22, 106

               
               
               Conread position:1-240
               
               
               Cow position:chr27:27038799-27039052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-311
               
               
               Cow position:chr27:28034825-28035124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):92, 42

               
               
               Conread position:2-209
               
               
               Cow position:chr27:23594356-23594142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):22, 38

               
               
               Conread position:3-197
               
               
               Cow position:chr27:20553759-20553563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):21, 61

               
               
               Conread position:3-198
               
               
               Cow position:chr27:31386603-31386802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):25, 51

               
               
               Conread position:3-201
               
               
               Cow position:chr27:1768583-1768797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):16, 80

               
               
               Conread position:4-184
               
               
               Cow position:chr27:29149255-29149429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:4-188
               
               
               Cow position:chr27:1636905-1637096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:4-196
               
               
               Cow position:chr27:17646137-17646337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:4-200
               
               
               Cow position:chr27:20748973-20749182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):21, 103

               
               
               Conread position:5-144
               
               
               Cow position:chr27:21976078-21975936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:5-175
               
               
               Cow position:chr27:18593298-18593125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):54, 103

               
               
               Conread position:5-175
               
               
               Cow position:chr27:20497241-20497058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:5-176
               
               
               Cow position:chr27:1123060-1122883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-176
               
               
               Cow position:chr27:23890968-23890789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:5-176
               
               
               Cow position:chr27:30354314-30354493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):53, 38

               
               
               Conread position:5-178
               
               
               Cow position:chr27:11435293-11435471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:5-184
               
               
               Cow position:chr27:10653715-10653528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:5-186
               
               
               Cow position:chr27:26489876-26490067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-187
               
               
               Cow position:chr27:3306799-3306616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:5-187
               
               
               Cow position:chr27:10307273-10307457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):53, 33

               
               
               Conread position:5-187
               
               
               Cow position:chr27:12596794-12596617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):73, 38

               
               
               Conread position:5-188
               
               
               Cow position:chr27:8263306-8263499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr27:16965602-16965415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):42, 25

               
               
               Conread position:5-189
               
               
               Cow position:chr27:29380885-29380693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:5-196
               
               
               Cow position:chr27:16705281-16705082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-196
               
               
               Cow position:chr27:23452488-23452293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:5-196
               
               
               Cow position:chr27:26509130-26509322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):17, 29

               
               
               Conread position:5-196
               
               
               Cow position:chr27:28921868-28922061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):83, 119

               
               
               Conread position:5-198
               
               
               Cow position:chr27:212993-212785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 131

               
               
               Conread position:5-198
               
               
               Cow position:chr27:16103837-16103641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):56, 117

               
               
               Conread position:5-198
               
               
               Cow position:chr27:23882349-23882538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):38, 25

               
               
               Conread position:5-201
               
               
               Cow position:chr27:19388043-19387844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 25

               
               
               Conread position:5-201
               
               
               Cow position:chr27:19896784-19896586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 33

               
               
               Conread position:5-201
               
               
               Cow position:chr27:24331750-24331547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr27:26226261-26226463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):16, 12

               
               
               Conread position:5-201
               
               
               Cow position:chr27:28518324-28518122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr27:28931765-28931977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:5-204
               
               
               Cow position:chr27:15315534-15315342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):94, 32

               
               
               Conread position:5-204
               
               
               Cow position:chr27:15867425-15867213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):58, 9

               
               
               Conread position:5-204
               
               
               Cow position:chr27:18882684-18882476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 169

               
               
               Conread position:5-204
               
               
               Cow position:chr27:22225566-22225770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr27:1353616-1353403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr27:6925118-6924905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr27:7935129-7935335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):47, 181

               
               
               Conread position:5-207
               
               
               Cow position:chr27:10979892-10979683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):43, 32

               
               
               Conread position:5-207
               
               
               Cow position:chr27:20354613-20354423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):86, 37

               
               
               Conread position:5-207
               
               
               Cow position:chr27:20514850-20514643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):41, 105

               
               
               Conread position:5-207
               
               
               Cow position:chr27:23860197-23859986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):45, 157

               
               
               Conread position:5-207
               
               
               Cow position:chr27:28896909-28896701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):50, 101

               
               
               Conread position:5-207
               
               
               Cow position:chr27:30260860-30261072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):47, 33

               
               
               Conread position:5-207
               
               
               Cow position:chr27:30765065-30764856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):45, 146

               
               
               Conread position:5-208
               
               
               Cow position:chr27:17472838-17472632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:5-209
               
               
               Cow position:chr27:18558388-18558181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):48, 113

               
               
               Conread position:5-214
               
               
               Cow position:chr27:6550486-6550277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:165
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):52, 74

               
               
               Conread position:5-214
               
               
               Cow position:chr27:7649555-7649770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:5-215
               
               
               Cow position:chr27:19660964-19660745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):41, 185

               
               
               Conread position:5-215
               
               
               Cow position:chr27:29593599-29593814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):44, 205

               
               
               Conread position:5-216
               
               
               Cow position:chr27:2592577-2592353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-220
               
               
               Cow position:chr27:16088838-16088613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):40, 169

               
               
               Conread position:5-223
               
               
               Cow position:chr27:20795822-20795597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:5-238
               
               
               Cow position:chr27:30389266-30389505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):54, 32

               
               
               Conread position:5-239
               
               
               Cow position:chr27:4156031-4155793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):41, 166

               
               
               Conread position:5-267
               
               
               Cow position:chr27:4386032-4386301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):54, 241

               
               
               Conread position:5-300
               
               
               Cow position:chr27:18826582-18826288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):46, 189

               
               
               Conread position:5-300
               
               
               Cow position:chr27:26407136-26407441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):44, 60

               
               
               Conread position:5-304
               
               
               Cow position:chr27:15343251-15343546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 90

               
               
               Conread position:5-306
               
               
               Cow position:chr27:536494-536184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):42, 173

               
               
               Conread position:5-308
               
               
               Cow position:chr27:15215262-15214947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 249

               
               
               Conread position:5-308
               
               
               Cow position:chr27:18922801-18923106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 195

               
               
               Conread position:5-312
               
               
               Cow position:chr27:23483256-23482935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):33, 111

               
               
               Conread position:5-312
               
               
               Cow position:chr27:30988825-30988523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:6-179
               
               
               Cow position:chr27:10992387-10992205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 108

               
               
               Conread position:6-198
               
               
               Cow position:chr27:22418739-22418936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 86

               
               
               Conread position:6-207
               
               
               Cow position:chr27:19933095-19932889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):16, 59

               
               
               Conread position:6-207
               
               
               Cow position:chr27:22423538-22423337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):84, 37

               
               
               Conread position:6-304
               
               
               Cow position:chr27:28467422-28467712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):18, 11

               
               
               Conread position:6-311
               
               
               Cow position:chr27:20584429-20584717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):45, 144

               
               
               Conread position:7-171
               
               
               Cow position:chr27:715529-715357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 23

               
               
               Conread position:7-197
               
               
               Cow position:chr27:17918288-17918483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:7-207
               
               
               Cow position:chr27:8168404-8168610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:7-209
               
               
               Cow position:chr27:14303761-14303555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):84, 101

               
               
               Conread position:7-214
               
               
               Cow position:chr27:22603207-22602999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 60

               
               
               Conread position:7-227
               
               
               Cow position:chr27:7974201-7973978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):39, 83

               
               
               Conread position:7-268
               
               
               Cow position:chr27:8942656-8942921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):56, 186

               
               
               Conread position:12-197
               
               
               Cow position:chr27:24371261-24371071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):51, 34

               
               
               Conread position:12-207
               
               
               Cow position:chr27:26919881-26920092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:13-196
               
               
               Cow position:chr27:17397428-17397623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:13-201
               
               
               Cow position:chr27:25277162-25276970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):36, 103

               
               
               Conread position:13-207
               
               
               Cow position:chr27:426991-426793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):38, 25

               
               
               Conread position:13-209
               
               
               Cow position:chr27:25152105-25151912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):9, 82

               
               
               Conread position:13-220
               
               
               Cow position:chr27:15378453-15378664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:13-234
               
               
               Cow position:chr27:30359430-30359200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:15-198
               
               
               Cow position:chr27:12459304-12459118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):32, 99

               
               
               Conread position:15-311
               
               
               Cow position:chr27:26413234-26413529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 23

               
               
               Conread position:16-308
               
               
               Cow position:chr27:6015221-6014924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):37, 170

               
               
               Conread position:17-198
               
               
               Cow position:chr27:13254782-13254967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):13, 38

               
               
               Conread position:17-234
               
               
               Cow position:chr27:19543901-19544125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):31, 186

               
               
               Conread position:17-311
               
               
               Cow position:chr27:27270521-27270818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:226
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):31, 61

               
               
               Conread position:19-196
               
               
               Cow position:chr27:20552755-20552950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:19-206
               
               
               Cow position:chr27:25809506-25809696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):33, 87

               
               
               Conread position:19-207
               
               
               Cow position:chr27:26111895-26112095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:19-311
               
               
               Cow position:chr27:28290862-28290592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:216
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:20-175
               
               
               Cow position:chr27:29184824-29184985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):29, 18

               
               
               Conread position:20-184
               
               
               Cow position:chr27:15925355-15925189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):73, 23

               
               
               Conread position:20-186
               
               
               Cow position:chr27:26852578-26852738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):90, 25

               
               
               Conread position:20-186
               
               
               Cow position:chr27:28271137-28271309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):38, 18

               
               
               Conread position:20-188
               
               
               Cow position:chr27:20337115-20336941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):38, 68

               
               
               Conread position:20-195
               
               
               Cow position:chr27:29831684-29831869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:20-196
               
               
               Cow position:chr27:20803643-20803827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 167

               
               
               Conread position:20-196
               
               
               Cow position:chr27:27558484-27558671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):26, 120

               
               
               Conread position:20-201
               
               
               Cow position:chr27:1290837-1291022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):35, 6

               
               
               Conread position:20-207
               
               
               Cow position:chr27:27020090-27020277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):65, 23

               
               
               Conread position:20-207
               
               
               Cow position:chr27:30868726-30868928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:20-212
               
               
               Cow position:chr27:26793774-26793967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:20-220
               
               
               Cow position:chr27:30915021-30914818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):29, 86

               
               
               Conread position:20-223
               
               
               Cow position:chr27:27064425-27064636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:20-234
               
               
               Cow position:chr27:15643185-15642968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):32, 118

               
               
               Conread position:20-295
               
               
               Cow position:chr27:22454764-22455027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 23

               
               
               Conread position:20-299
               
               
               Cow position:chr27:15865625-15865339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):28, 225

               
               
               Conread position:21-201
               
               
               Cow position:chr27:26437105-26437295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:21-206
               
               
               Cow position:chr27:11982635-11982824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):37, 17

               
               
               Conread position:21-265
               
               
               Cow position:chr27:22723692-22723932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):72, 27

               
               
               Conread position:21-312
               
               
               Cow position:chr27:1789123-1789431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:22-187
               
               
               Cow position:chr27:28478594-28478420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:22-201
               
               
               Cow position:chr27:29693479-29693304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 21

               
               
               Conread position:22-202
               
               
               Cow position:chr27:6541641-6541459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):33, 21

               
               
               Conread position:22-221
               
               
               Cow position:chr27:22348499-22348296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 41

               
               
               Conread position:23-196
               
               
               Cow position:chr27:20812917-20812736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:23-207
               
               
               Cow position:chr27:15866227-15866042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):30, 160

               
               
               Conread position:23-209
               
               
               Cow position:chr27:31017822-31018005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):77, 15

               
               
               Conread position:23-218
               
               
               Cow position:chr27:22559813-22560015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):26, 88

               
               
               Conread position:23-308
               
               
               Cow position:chr27:21393499-21393786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):70, 231

               
               
               Conread position:25-201
               
               
               Cow position:chr27:30455998-30455820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):27, 12

               
               
               Conread position:26-201
               
               
               Cow position:chr27:20045895-20045720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):27, 12

               
               
               Conread position:26-207
               
               
               Cow position:chr27:30872051-30872236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):36, 17

               
               
               Conread position:29-201
               
               
               Cow position:chr27:13317972-13318148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):23, 9

               
               
               Conread position:29-209
               
               
               Cow position:chr27:24303946-24303765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):64, 14

               
               
               Conread position:29-310
               
               
               Cow position:chr27:27673016-27673306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 21

               
               
               Conread position:31-188
               
               
               Cow position:chr27:26883257-26883418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):62, 19

               
               
               Conread position:32-198
               
               
               Cow position:chr27:25783620-25783455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):23, 11

               
               
               Conread position:38-196
               
               
               Cow position:chr27:11480640-11480805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:38-207
               
               
               Cow position:chr27:16512179-16512346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):53, 19

               
               
               Conread position:39-223
               
               
               Cow position:chr27:6302474-6302663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):19, 94

               
               
               Conread position:40-196
               
               
               Cow position:chr27:9977675-9977514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 13

               
               
               Conread position:40-229
               
               
               Cow position:chr27:6319910-6319719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 27

               
               
               Conread position:40-304
               
               
               Cow position:chr27:27641022-27641279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):53, 17

               
               
               Conread position:44-219
               
               
               Cow position:chr27:29319398-29319222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):49, 134

               
               
               Conread position:45-196
               
               
               Cow position:chr27:4944529-4944680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):48, 17

               
               
               Conread position:46-189
               
               
               Cow position:chr27:8790756-8790905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:46-204
               
               
               Cow position:chr27:18435148-18435310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:46-212
               
               
               Cow position:chr27:6674263-6674096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:46-294
               
               
               Cow position:chr27:30489426-30489661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:46-309
               
               
               Cow position:chr27:16589718-16589971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):48, 16

               
               
               Conread position:47-189
               
               
               Cow position:chr27:12191494-12191641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):8, 26

               
               
               Conread position:50-207
               
               
               Cow position:chr27:11993882-11994046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:56-185
               
               
               Cow position:chr27:29603793-29603661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:56-196
               
               
               Cow position:chr27:24709528-24709388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):53, 30

               
               
               Conread position:57-177
               
               
               Cow position:chr27:15332321-15332447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-188
               
               
               Cow position:chr27:23545355-23545491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:57-189
               
               
               Cow position:chr27:29388646-29388509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:57-201
               
               
               Cow position:chr27:14957755-14957899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):31, 111

               
               
               Conread position:57-201
               
               
               Cow position:chr27:23895394-23895251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):51, 32

               
               
               Conread position:57-201
               
               
               Cow position:chr27:29991473-29991621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:57-219
               
               
               Cow position:chr27:30908646-30908482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 81

               
               
               Conread position:58-187
               
               
               Cow position:chr27:23216345-23216476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 67

               
               
               Conread position:58-306
               
               
               Cow position:chr27:7731284-7731519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):30, 122

               
               
               Conread position:59-198
               
               
               Cow position:chr27:13940585-13940728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:61-210
               
               
               Cow position:chr27:26118468-26118317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:61-318
               
               
               Cow position:chr27:19756066-19755798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):27, 226

               
               
               Conread position:62-196
               
               
               Cow position:chr27:14675046-14675184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:62-198
               
               
               Cow position:chr27:26121729-26121588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:63-207
               
               
               Cow position:chr27:26481227-26481373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):30, 71

               
               
               Conread position:64-175
               
               
               Cow position:chr27:6162443-6162558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:64-209
               
               
               Cow position:chr27:19452969-19452824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):24, 120

               
               
               Conread position:66-172
               
               
               Cow position:chr27:27919661-27919768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:66-198
               
               
               Cow position:chr27:20548776-20548642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):27, 118

               
               
               Conread position:70-320
               
               
               Cow position:chr27:27255949-27255708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):23, 125

               
               
               Conread position:73-301
               
               
               Cow position:chr27:28541156-28541375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):14, 120

               
               
               Conread position:75-294
               
               
               Cow position:chr27:20543676-20543453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):16, 107

               
               
               Conread position:76-309
               
               
               Cow position:chr27:17918764-17918997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):11, 117

               
               
               Conread position:79-176
               
               
               Cow position:chr27:22792782-22792683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-195
               
               
               Cow position:chr27:4413868-4413987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:79-303
               
               
               Cow position:chr27:23023954-23023728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-304
               
               
               Cow position:chr27:16237577-16237347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:80-213
               
               
               Cow position:chr27:22268176-22268041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):13, 25

               
               
               Conread position:82-209
               
               
               Cow position:chr27:29236509-29236384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 7

               
               
               Conread position:84-207
               
               
               Cow position:chr27:23060170-23060293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):26, 5

               
               
               Conread position:86-201
               
               
               Cow position:chr27:20048576-20048460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:86-201
               
               
               Cow position:chr27:26400779-26400895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-204
               
               
               Cow position:chr27:26909649-26909768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-209
               
               
               Cow position:chr27:29249534-29249409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:86-307
               
               
               Cow position:chr27:22153801-22153593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):24, 96

               
               
               Conread position:86-309
               
               
               Cow position:chr27:17927172-17927403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):81, 23

               
               
               Conread position:86-311
               
               
               Cow position:chr27:29658773-29658988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):24, 66

               
               
               Conread position:89-207
               
               
               Cow position:chr27:21951039-21951157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 92

               
               
               Conread position:92-207
               
               
               Cow position:chr27:11208618-11208734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:92-310
               
               
               Cow position:chr27:19823278-19823061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):19, 89

               
               
               Conread position:104-309
               
               
               Cow position:chr27:9697576-9697366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:109-238
               
               
               Cow position:chr27:23488942-23489074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:109-290
               
               
               Cow position:chr27:18873966-18873784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):101, 152

               
               
               Conread position:109-312
               
               
               Cow position:chr27:28944919-28945115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):133, 44

               
               
               Conread position:110-300
               
               
               Cow position:chr27:5573835-5574016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:119-303
               
               
               Cow position:chr27:29207716-29207540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:157-300
               
               
               Cow position:chr27:27709747-27709885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):82, 34

               
               
               Conread position:164-304
               
               
               Cow position:chr27:30293026-30293165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-158
               
               
               Cow position:chr28:25283128-25283286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 111

               
               
               Conread position:1-171
               
               
               Cow position:chr28:11786791-11786612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-182
               
               
               Cow position:chr28:13176761-13176573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):18, 103

               
               
               Conread position:1-194
               
               
               Cow position:chr28:19564303-19564102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):48, 182

               
               
               Conread position:1-196
               
               
               Cow position:chr28:4158879-4159085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 69

               
               
               Conread position:1-196
               
               
               Cow position:chr28:7268015-7267816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):45, 115

               
               
               Conread position:1-198
               
               
               Cow position:chr28:4045773-4045976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):18, 31

               
               
               Conread position:1-201
               
               
               Cow position:chr28:2132002-2131789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 176

               
               
               Conread position:1-201
               
               
               Cow position:chr28:9812204-9812406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):45, 143

               
               
               Conread position:1-204
               
               
               Cow position:chr28:13474227-13474439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:1-206
               
               
               Cow position:chr28:25727299-25727512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):45, 99

               
               
               Conread position:1-207
               
               
               Cow position:chr28:10495360-10495160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):115, 45

               
               
               Conread position:1-207
               
               
               Cow position:chr28:11829017-11828821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr28:13527125-13527337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):62, 36

               
               
               Conread position:1-212
               
               
               Cow position:chr28:25399801-25400015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):58, 71

               
               
               Conread position:1-214
               
               
               Cow position:chr28:2898925-2899137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):21, 43

               
               
               Conread position:1-214
               
               
               Cow position:chr28:5144591-5144375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):51, 195

               
               
               Conread position:1-219
               
               
               Cow position:chr28:25677420-25677187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-223
               
               
               Cow position:chr28:17398299-17398077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):82, 45

               
               
               Conread position:1-223
               
               
               Cow position:chr28:17414540-17414316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):82, 45

               
               
               Conread position:1-241
               
               
               Cow position:chr28:26685041-26685286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):17, 165

               
               
               Conread position:1-300
               
               
               Cow position:chr28:11818042-11817742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):19, 202

               
               
               Conread position:1-300
               
               
               Cow position:chr28:14659875-14660163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):118, 45

               
               
               Conread position:1-301
               
               
               Cow position:chr28:4841471-4841140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):20, 169

               
               
               Conread position:1-301
               
               
               Cow position:chr28:13233182-13232885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 46

               
               
               Conread position:1-301
               
               
               Cow position:chr28:25806499-25806798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):21, 56

               
               
               Conread position:1-308
               
               
               Cow position:chr28:2752568-2752268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):21, 195

               
               
               Conread position:2-194
               
               
               Cow position:chr28:14234895-14235080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):89, 17

               
               
               Conread position:2-311
               
               
               Cow position:chr28:11348351-11348656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):17, 32

               
               
               Conread position:3-184
               
               
               Cow position:chr28:23676063-23676256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):16, 68

               
               
               Conread position:3-307
               
               
               Cow position:chr28:29434502-29434200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):31, 199

               
               
               Conread position:4-201
               
               
               Cow position:chr28:5204124-5204330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:5-158
               
               
               Cow position:chr28:5826884-5827043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-178
               
               
               Cow position:chr28:21380811-21380992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):43, 156

               
               
               Conread position:5-179
               
               
               Cow position:chr28:32365775-32365956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:5-183
               
               
               Cow position:chr28:26719283-26719460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):83, 39

               
               
               Conread position:5-184
               
               
               Cow position:chr28:5817772-5817960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:5-186
               
               
               Cow position:chr28:7372189-7372002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:5-187
               
               
               Cow position:chr28:21598321-21598130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:5-187
               
               
               Cow position:chr28:23007801-23007609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-188
               
               
               Cow position:chr28:5166699-5166889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr28:10589091-10588899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 65

               
               
               Conread position:5-195
               
               
               Cow position:chr28:16085257-16085453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):59, 8

               
               
               Conread position:5-195
               
               
               Cow position:chr28:30746795-30746599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:5-196
               
               
               Cow position:chr28:11866733-11866535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):43, 9

               
               
               Conread position:5-196
               
               
               Cow position:chr28:12951362-12951547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:5-196
               
               
               Cow position:chr28:19262655-19262457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):44, 26

               
               
               Conread position:5-196
               
               
               Cow position:chr28:20759771-20759572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):17, 40

               
               
               Conread position:5-197
               
               
               Cow position:chr28:23410392-23410192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr28:3740813-3741008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:5-198
               
               
               Cow position:chr28:4016465-4016663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):50, 33

               
               
               Conread position:5-198
               
               
               Cow position:chr28:11426609-11426411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 175

               
               
               Conread position:5-198
               
               
               Cow position:chr28:20313208-20313409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:160
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr28:21355156-21355363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr28:2523873-2524077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 74

               
               
               Conread position:5-201
               
               
               Cow position:chr28:3011340-3011135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 121

               
               
               Conread position:5-201
               
               
               Cow position:chr28:4282557-4282357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):41, 102

               
               
               Conread position:5-201
               
               
               Cow position:chr28:8787472-8787675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 136

               
               
               Conread position:5-201
               
               
               Cow position:chr28:25728132-25728330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 107

               
               
               Conread position:5-204
               
               
               Cow position:chr28:3449234-3449450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-204
               
               
               Cow position:chr28:4881304-4881102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 38

               
               
               Conread position:5-204
               
               
               Cow position:chr28:5931285-5931487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):21, 110

               
               
               Conread position:5-204
               
               
               Cow position:chr28:11346551-11346348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):88, 52

               
               
               Conread position:5-204
               
               
               Cow position:chr28:13090594-13090388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-204
               
               
               Cow position:chr28:23296257-23296460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr28:6358479-6358272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:5-207
               
               
               Cow position:chr28:9099867-9100067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):41, 119

               
               
               Conread position:5-207
               
               
               Cow position:chr28:11307575-11307376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):90, 37

               
               
               Conread position:5-207
               
               
               Cow position:chr28:12672530-12672323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr28:13245492-13245702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr28:26982804-26982597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:5-208
               
               
               Cow position:chr28:17012359-17012166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 138

               
               
               Conread position:5-223
               
               
               Cow position:chr28:6971418-6971189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 67

               
               
               Conread position:5-243
               
               
               Cow position:chr28:3161021-3160775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:5-296
               
               
               Cow position:chr28:16109869-16110164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:219
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):52, 22

               
               
               Conread position:5-304
               
               
               Cow position:chr28:7684750-7684473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):237, 38

               
               
               Conread position:5-307
               
               
               Cow position:chr28:21844888-21845195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 33

               
               
               Conread position:5-307
               
               
               Cow position:chr28:33051961-33052265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):29, 180

               
               
               Conread position:5-310
               
               
               Cow position:chr28:8408667-8408968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 38

               
               
               Conread position:5-340
               
               
               Cow position:chr28:18354391-18354073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):147, 45

               
               
               Conread position:6-201
               
               
               Cow position:chr28:4013020-4013219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):32, 52

               
               
               Conread position:6-214
               
               
               Cow position:chr28:7437526-7437325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):87, 99

               
               
               Conread position:7-184
               
               
               Cow position:chr28:3078748-3078564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 130

               
               
               Conread position:7-189
               
               
               Cow position:chr28:9426417-9426227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:7-198
               
               
               Cow position:chr28:4181938-4182133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):45, 31

               
               
               Conread position:7-201
               
               
               Cow position:chr28:4643833-4643635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:7-212
               
               
               Cow position:chr28:4823541-4823750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):39, 51

               
               
               Conread position:7-225
               
               
               Cow position:chr28:27161393-27161168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):56, 135

               
               
               Conread position:12-179
               
               
               Cow position:chr28:1099723-1099551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):11, 86

               
               
               Conread position:12-198
               
               
               Cow position:chr28:7619215-7619018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:12-201
               
               
               Cow position:chr28:7350595-7350789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):10, 52

               
               
               Conread position:13-201
               
               
               Cow position:chr28:5650796-5650603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):51, 10

               
               
               Conread position:13-207
               
               
               Cow position:chr28:17739764-17739963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):29, 84

               
               
               Conread position:13-304
               
               
               Cow position:chr28:15043923-15043635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):41, 176

               
               
               Conread position:15-187
               
               
               Cow position:chr28:34878027-34877861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 83

               
               
               Conread position:15-201
               
               
               Cow position:chr28:16386565-16386383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):47, 78

               
               
               Conread position:15-287
               
               
               Cow position:chr28:19079902-19079611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):48, 22

               
               
               Conread position:17-212
               
               
               Cow position:chr28:8147917-8147718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):42, 25

               
               
               Conread position:17-234
               
               
               Cow position:chr28:31110059-31109833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:19-198
               
               
               Cow position:chr28:17601606-17601422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):32, 19

               
               
               Conread position:20-189
               
               
               Cow position:chr28:26922419-26922245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-198
               
               
               Cow position:chr28:22321374-22321550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):54, 39

               
               
               Conread position:20-198
               
               
               Cow position:chr28:25249301-25249486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):8, 30

               
               
               Conread position:20-200
               
               
               Cow position:chr28:30865365-30865551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:20-201
               
               
               Cow position:chr28:7698032-7697847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):28, 77

               
               
               Conread position:20-201
               
               
               Cow position:chr28:10053385-10053191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 186

               
               
               Conread position:20-201
               
               
               Cow position:chr28:28765957-28765768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:20-204
               
               
               Cow position:chr28:10606680-10606496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):29, 64

               
               
               Conread position:20-205
               
               
               Cow position:chr28:11559688-11559493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr28:751178-751366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):32, 17

               
               
               Conread position:20-207
               
               
               Cow position:chr28:4138719-4138529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:20-207
               
               
               Cow position:chr28:4307956-4307755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):35, 23

               
               
               Conread position:20-209
               
               
               Cow position:chr28:26743572-26743769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):33, 22

               
               
               Conread position:20-213
               
               
               Cow position:chr28:19222203-19222005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):28, 52

               
               
               Conread position:20-214
               
               
               Cow position:chr28:5236656-5236456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 40

               
               
               Conread position:20-216
               
               
               Cow position:chr28:24706851-24707047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):67, 24

               
               
               Conread position:20-226
               
               
               Cow position:chr28:32174577-32174789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):46, 23

               
               
               Conread position:20-304
               
               
               Cow position:chr28:14933914-14934204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):60, 18

               
               
               Conread position:20-311
               
               
               Cow position:chr28:4873401-4873113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):26, 168

               
               
               Conread position:20-312
               
               
               Cow position:chr28:7388819-7388529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):25, 92

               
               
               Conread position:20-319
               
               
               Cow position:chr28:25195659-25195934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 18

               
               
               Conread position:21-189
               
               
               Cow position:chr28:24343319-24343489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):36, 74

               
               
               Conread position:21-196
               
               
               Cow position:chr28:11059451-11059624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):42, 17

               
               
               Conread position:21-200
               
               
               Cow position:chr28:10297809-10297985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):62, 25

               
               
               Conread position:21-201
               
               
               Cow position:chr28:15601224-15601411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:21-207
               
               
               Cow position:chr28:6283538-6283350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 17

               
               
               Conread position:22-184
               
               
               Cow position:chr28:4765625-4765794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:22-207
               
               
               Cow position:chr28:8149676-8149491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):71, 13

               
               
               Conread position:22-207
               
               
               Cow position:chr28:8347681-8347872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:22-207
               
               
               Cow position:chr28:21363695-21363881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):27, 76

               
               
               Conread position:23-207
               
               
               Cow position:chr28:27218275-27218463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 20

               
               
               Conread position:23-208
               
               
               Cow position:chr28:6059520-6059328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:24-186
               
               
               Cow position:chr28:34843623-34843455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:24-188
               
               
               Cow position:chr28:11815127-11814954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:24-207
               
               
               Cow position:chr28:3726262-3726071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):31, 167

               
               
               Conread position:25-196
               
               
               Cow position:chr28:2819735-2819905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):68, 25

               
               
               Conread position:25-209
               
               
               Cow position:chr28:20397418-20397230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):34, 18

               
               
               Conread position:26-197
               
               
               Cow position:chr28:662060-662238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):33, 24

               
               
               Conread position:26-201
               
               
               Cow position:chr28:5235835-5236010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):31, 24

               
               
               Conread position:26-223
               
               
               Cow position:chr28:34230183-34230386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:27-200
               
               
               Cow position:chr28:11884565-11884385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):29, 11

               
               
               Conread position:30-237
               
               
               Cow position:chr28:19026052-19025834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:30-312
               
               
               Cow position:chr28:1632694-1632439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 50

               
               
               Conread position:32-200
               
               
               Cow position:chr28:2279631-2279461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 65

               
               
               Conread position:33-207
               
               
               Cow position:chr28:19015678-19015843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):10, 61

               
               
               Conread position:35-197
               
               
               Cow position:chr28:19216790-19216952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):57, 11

               
               
               Conread position:36-196
               
               
               Cow position:chr28:118578-118740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:94
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:36-196
               
               
               Cow position:chr28:4185871-4186036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):27, 14

               
               
               Conread position:37-200
               
               
               Cow position:chr28:30937700-30937537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 26

               
               
               Conread position:38-200
               
               
               Cow position:chr28:12991104-12991276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:38-207
               
               
               Cow position:chr28:8827127-8827302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 68

               
               
               Conread position:39-188
               
               
               Cow position:chr28:3492813-3492662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):60, 25

               
               
               Conread position:39-196
               
               
               Cow position:chr28:21008697-21008537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):13, 86

               
               
               Conread position:39-204
               
               
               Cow position:chr28:12933770-12933592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:45-221
               
               
               Cow position:chr28:2772689-2772865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):42, 12

               
               
               Conread position:45-310
               
               
               Cow position:chr28:5867702-5867950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):66, 42

               
               
               Conread position:46-188
               
               
               Cow position:chr28:8396313-8396457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):47, 15

               
               
               Conread position:46-207
               
               
               Cow position:chr28:5630074-5630237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):33, 101

               
               
               Conread position:46-209
               
               
               Cow position:chr28:13356391-13356228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):64, 33

               
               
               Conread position:46-303
               
               
               Cow position:chr28:18770060-18770290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 75

               
               
               Conread position:47-244
               
               
               Cow position:chr28:17358763-17358562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 121

               
               
               Conread position:55-204
               
               
               Cow position:chr28:15362564-15362719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:55-237
               
               
               Cow position:chr28:7498161-7497976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):33, 10

               
               
               Conread position:56-201
               
               
               Cow position:chr28:10615960-10615811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:57-195
               
               
               Cow position:chr28:10163787-10163926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:57-196
               
               
               Cow position:chr28:23047607-23047748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-200
               
               
               Cow position:chr28:3143888-3143744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):36, 55

               
               
               Conread position:57-207
               
               
               Cow position:chr28:4163592-4163442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):53, 33

               
               
               Conread position:57-207
               
               
               Cow position:chr28:17680609-17680763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:58-201
               
               
               Cow position:chr28:6563910-6563762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:59-214
               
               
               Cow position:chr28:24064906-24064751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:61-197
               
               
               Cow position:chr28:19039028-19038888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:61-198
               
               
               Cow position:chr28:18797311-18797449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):32, 84

               
               
               Conread position:62-187
               
               
               Cow position:chr28:13048291-13048163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:62-198
               
               
               Cow position:chr28:30081732-30081593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 112

               
               
               Conread position:62-208
               
               
               Cow position:chr28:5188437-5188285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:63-220
               
               
               Cow position:chr28:32179690-32179847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):28, 42

               
               
               Conread position:63-309
               
               
               Cow position:chr28:5152594-5152824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):25, 122

               
               
               Conread position:64-196
               
               
               Cow position:chr28:26826217-26826349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 27

               
               
               Conread position:65-204
               
               
               Cow position:chr28:22085543-22085404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):46, 21

               
               
               Conread position:66-204
               
               
               Cow position:chr28:5441901-5441761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):25, 58

               
               
               Conread position:67-304
               
               
               Cow position:chr28:25488050-25487814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 137

               
               
               Conread position:68-190
               
               
               Cow position:chr28:26784243-26784118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):11, 85

               
               
               Conread position:69-198
               
               
               Cow position:chr28:4355547-4355678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):17, 93

               
               
               Conread position:72-234
               
               
               Cow position:chr28:29042052-29041885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):21, 121

               
               
               Conread position:74-207
               
               
               Cow position:chr28:8167346-8167215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):36, 20

               
               
               Conread position:74-223
               
               
               Cow position:chr28:12385289-12385141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):19, 110

               
               
               Conread position:75-190
               
               
               Cow position:chr28:20968575-20968456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:75-304
               
               
               Cow position:chr28:19024440-19024654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):12, 107

               
               
               Conread position:75-312
               
               
               Cow position:chr28:2743086-2743329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 166

               
               
               Conread position:76-304
               
               
               Cow position:chr28:16388912-16389150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):12, 206

               
               
               Conread position:78-204
               
               
               Cow position:chr28:5673885-5674013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 120

               
               
               Conread position:79-196
               
               
               Cow position:chr28:117752-117632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-198
               
               
               Cow position:chr28:34097606-34097489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):14, 82

               
               
               Conread position:79-202
               
               
               Cow position:chr28:2077512-2077638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:79-207
               
               
               Cow position:chr28:4022684-4022814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-207
               
               
               Cow position:chr28:11398786-11398656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:82-188
               
               
               Cow position:chr28:16691937-16692045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:82-309
               
               
               Cow position:chr28:9418952-9418739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):5, 111

               
               
               Conread position:86-223
               
               
               Cow position:chr28:10247508-10247645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 85

               
               
               Conread position:86-237
               
               
               Cow position:chr28:18533887-18533736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):24, 92

               
               
               Conread position:86-312
               
               
               Cow position:chr28:6255190-6255415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 79

               
               
               Conread position:87-201
               
               
               Cow position:chr28:13448143-13448256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):23, 95

               
               
               Conread position:87-224
               
               
               Cow position:chr28:11365507-11365373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 84

               
               
               Conread position:89-304
               
               
               Cow position:chr28:9430704-9430504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 92

               
               
               Conread position:90-308
               
               
               Cow position:chr28:23641241-23641033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:92-193
               
               
               Cow position:chr28:25423988-25423889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:93-210
               
               
               Cow position:chr28:9927874-9927757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):17, 58

               
               
               Conread position:93-318
               
               
               Cow position:chr28:8258850-8259078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):17, 181

               
               
               Conread position:102-201
               
               
               Cow position:chr28:25518729-25518630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:109-204
               
               
               Cow position:chr28:24726394-24726299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:80
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:109-207
               
               
               Cow position:chr28:16200700-16200602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:81
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:109-309
               
               
               Cow position:chr28:11115129-11115317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):106, 71

               
               
               Conread position:116-310
               
               
               Cow position:chr28:5773940-5774128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):26, 72

               
               
               Conread position:186-311
               
               
               Cow position:chr28:16214795-16214674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):53, 8

               
               
               Conread position:189-335
               
               
               Cow position:chr28:28075685-28075536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:1-162
               
               
               Cow position:chr29:868695-868864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-174
               
               
               Cow position:chr29:28868558-28868744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):51, 18

               
               
               Conread position:1-175
               
               
               Cow position:chr29:22162333-22162147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-177
               
               
               Cow position:chr29:28735123-28734944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):44, 57

               
               
               Conread position:1-184
               
               
               Cow position:chr29:27858714-27858898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):52, 96

               
               
               Conread position:1-189
               
               
               Cow position:chr29:25333542-25333345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):37, 73

               
               
               Conread position:1-196
               
               
               Cow position:chr29:28979567-28979380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):20, 47

               
               
               Conread position:1-200
               
               
               Cow position:chr29:3685598-3685386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):20, 46

               
               
               Conread position:1-201
               
               
               Cow position:chr29:23874379-23874588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1-201
               
               
               Cow position:chr29:37618220-37618434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:1-204
               
               
               Cow position:chr29:109617-109815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):21, 101

               
               
               Conread position:1-206
               
               
               Cow position:chr29:40852847-40853061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):22, 163

               
               
               Conread position:1-207
               
               
               Cow position:chr29:22068832-22068609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):18, 181

               
               
               Conread position:1-207
               
               
               Cow position:chr29:26017588-26017368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-208
               
               
               Cow position:chr29:3825893-3826107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):59, 37

               
               
               Conread position:1-212
               
               
               Cow position:chr29:28775537-28775324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):47, 25

               
               
               Conread position:1-223
               
               
               Cow position:chr29:847727-847494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):18, 105

               
               
               Conread position:1-223
               
               
               Cow position:chr29:26654122-26653896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):25, 46

               
               
               Conread position:1-224
               
               
               Cow position:chr29:32211136-32210923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):92, 36

               
               
               Conread position:1-234
               
               
               Cow position:chr29:27873524-27873762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 30

               
               
               Conread position:1-235
               
               
               Cow position:chr29:9455137-9454896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr29:16195764-16196062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):58, 49

               
               
               Conread position:2-195
               
               
               Cow position:chr29:7310603-7310795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):50, 27

               
               
               Conread position:2-205
               
               
               Cow position:chr29:16290645-16290860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:3-201
               
               
               Cow position:chr29:7966161-7966375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:3-209
               
               
               Cow position:chr29:45005709-45005493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:4-197
               
               
               Cow position:chr29:41112950-41112757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):89, 49

               
               
               Conread position:4-208
               
               
               Cow position:chr29:32799783-32799576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):46, 80

               
               
               Conread position:5-137
               
               
               Cow position:chr29:13486875-13487015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:5-163
               
               
               Cow position:chr29:41365038-41365199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):48, 120

               
               
               Conread position:5-175
               
               
               Cow position:chr29:19821213-19821385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):52, 38

               
               
               Conread position:5-176
               
               
               Cow position:chr29:12626053-12625873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-176
               
               
               Cow position:chr29:26416277-26416454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):44, 112

               
               
               Conread position:5-178
               
               
               Cow position:chr29:24578784-24578968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr29:6015048-6015237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr29:11053933-11053749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr29:39567613-39567792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):47, 101

               
               
               Conread position:5-186
               
               
               Cow position:chr29:34297645-34297455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 32

               
               
               Conread position:5-187
               
               
               Cow position:chr29:43495974-43496154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):55, 76

               
               
               Conread position:5-190
               
               
               Cow position:chr29:25474846-25475040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-192
               
               
               Cow position:chr29:9912098-9912293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):44, 167

               
               
               Conread position:5-197
               
               
               Cow position:chr29:11434048-11434243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):81, 33

               
               
               Conread position:5-197
               
               
               Cow position:chr29:17409261-17409459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):58, 32

               
               
               Conread position:5-198
               
               
               Cow position:chr29:22778251-22778047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr29:40117494-40117696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):17, 66

               
               
               Conread position:5-200
               
               
               Cow position:chr29:32963482-32963662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr29:7103481-7103686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr29:8669291-8669481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):54, 91

               
               
               Conread position:5-201
               
               
               Cow position:chr29:9709621-9709824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):46, 59

               
               
               Conread position:5-201
               
               
               Cow position:chr29:12025544-12025348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):46, 109

               
               
               Conread position:5-201
               
               
               Cow position:chr29:21941525-21941729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr29:25814912-25814709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 31

               
               
               Conread position:5-201
               
               
               Cow position:chr29:29769425-29769224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):52, 181

               
               
               Conread position:5-201
               
               
               Cow position:chr29:35292014-35292218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 187

               
               
               Conread position:5-202
               
               
               Cow position:chr29:21196726-21196521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):58, 48

               
               
               Conread position:5-207
               
               
               Cow position:chr29:17297060-17297270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):49, 32

               
               
               Conread position:5-207
               
               
               Cow position:chr29:35677621-35677409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr29:41530773-41530983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):44, 169

               
               
               Conread position:5-208
               
               
               Cow position:chr29:11915746-11915955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):42, 97

               
               
               Conread position:5-208
               
               
               Cow position:chr29:22029032-22028822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):45, 115

               
               
               Conread position:5-209
               
               
               Cow position:chr29:87090-86878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):32, 170

               
               
               Conread position:5-209
               
               
               Cow position:chr29:17222339-17222549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 182

               
               
               Conread position:5-209
               
               
               Cow position:chr29:31489247-31489456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):54, 32

               
               
               Conread position:5-213
               
               
               Cow position:chr29:13028363-13028578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):41, 97

               
               
               Conread position:5-217
               
               
               Cow position:chr29:13639444-13639222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):45, 21

               
               
               Conread position:5-220
               
               
               Cow position:chr29:40583719-40583928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):46, 90

               
               
               Conread position:5-222
               
               
               Cow position:chr29:5186571-5186348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 209

               
               
               Conread position:5-222
               
               
               Cow position:chr29:22519204-22518983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):45, 157

               
               
               Conread position:5-225
               
               
               Cow position:chr29:2263071-2262843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):28, 114

               
               
               Conread position:5-227
               
               
               Cow position:chr29:40959921-40959695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):53, 12

               
               
               Conread position:5-230
               
               
               Cow position:chr29:23243954-23243723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):48, 69

               
               
               Conread position:5-237
               
               
               Cow position:chr29:6293548-6293321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):88, 51

               
               
               Conread position:5-292
               
               
               Cow position:chr29:13867286-13866993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):52, 193

               
               
               Conread position:5-304
               
               
               Cow position:chr29:11397998-11397715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 58

               
               
               Conread position:5-304
               
               
               Cow position:chr29:11705049-11705331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:5-304
               
               
               Cow position:chr29:40096889-40097179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:232
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):41, 114

               
               
               Conread position:5-305
               
               
               Cow position:chr29:22936196-22936484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):44, 192

               
               
               Conread position:5-307
               
               
               Cow position:chr29:6844702-6844409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 11

               
               
               Conread position:5-307
               
               
               Cow position:chr29:31813874-31814179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 38

               
               
               Conread position:5-311
               
               
               Cow position:chr29:13373225-13373526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):86, 193

               
               
               Conread position:5-311
               
               
               Cow position:chr29:22175613-22175894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):74, 38

               
               
               Conread position:5-321
               
               
               Cow position:chr29:749984-749677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 147

               
               
               Conread position:6-189
               
               
               Cow position:chr29:5210413-5210607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):37, 125

               
               
               Conread position:6-200
               
               
               Cow position:chr29:22184185-22184390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:6-202
               
               
               Cow position:chr29:28166288-28166093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):87, 37

               
               
               Conread position:6-205
               
               
               Cow position:chr29:29057106-29057308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):53, 40

               
               
               Conread position:6-205
               
               
               Cow position:chr29:40891769-40891574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):51, 90

               
               
               Conread position:6-207
               
               
               Cow position:chr29:16609669-16609882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:6-214
               
               
               Cow position:chr29:29324487-29324287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 38

               
               
               Conread position:6-218
               
               
               Cow position:chr29:29314728-29314515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):49, 150

               
               
               Conread position:6-267
               
               
               Cow position:chr29:6286231-6285967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):87, 44

               
               
               Conread position:7-185
               
               
               Cow position:chr29:8004995-8004815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):38, 106

               
               
               Conread position:7-187
               
               
               Cow position:chr29:32894196-32894377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):69, 30

               
               
               Conread position:7-196
               
               
               Cow position:chr29:707023-706834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):27, 90

               
               
               Conread position:7-207
               
               
               Cow position:chr29:21443413-21443204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:7-308
               
               
               Cow position:chr29:10156377-10156065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):31, 110

               
               
               Conread position:8-201
               
               
               Cow position:chr29:35458844-35458643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):34, 61

               
               
               Conread position:9-198
               
               
               Cow position:chr29:32926026-32926230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:9-213
               
               
               Cow position:chr29:8926537-8926321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:12-187
               
               
               Cow position:chr29:43183377-43183199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):81, 26

               
               
               Conread position:12-189
               
               
               Cow position:chr29:37599276-37599104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):40, 88

               
               
               Conread position:12-236
               
               
               Cow position:chr29:1229539-1229770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):41, 7

               
               
               Conread position:12-300
               
               
               Cow position:chr29:42771580-42771847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):35, 79

               
               
               Conread position:13-182
               
               
               Cow position:chr29:36632930-36632751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:13-186
               
               
               Cow position:chr29:23813104-23812926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):51, 25

               
               
               Conread position:13-196
               
               
               Cow position:chr29:42886480-42886665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):32, 16

               
               
               Conread position:14-204
               
               
               Cow position:chr29:23697913-23698107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):7, 167

               
               
               Conread position:15-207
               
               
               Cow position:chr29:32656365-32656568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:15-221
               
               
               Cow position:chr29:25088686-25088891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):72, 30

               
               
               Conread position:17-184
               
               
               Cow position:chr29:7956052-7955880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):46, 20

               
               
               Conread position:17-209
               
               
               Cow position:chr29:15947105-15947301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):31, 48

               
               
               Conread position:17-304
               
               
               Cow position:chr29:24252175-24252465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):16, 96

               
               
               Conread position:17-309
               
               
               Cow position:chr29:38580915-38581195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):29, 169

               
               
               Conread position:19-186
               
               
               Cow position:chr29:43544662-43544490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:19-201
               
               
               Cow position:chr29:2055999-2056189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):32, 7

               
               
               Conread position:19-210
               
               
               Cow position:chr29:27911532-27911727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):45, 120

               
               
               Conread position:19-231
               
               
               Cow position:chr29:27926715-27926934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 24

               
               
               Conread position:20-162
               
               
               Cow position:chr29:26319116-26319254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):59, 30

               
               
               Conread position:20-178
               
               
               Cow position:chr29:4520276-4520439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):31, 92

               
               
               Conread position:20-187
               
               
               Cow position:chr29:40994949-40994777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:20-188
               
               
               Cow position:chr29:4085260-4085423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):71, 24

               
               
               Conread position:20-189
               
               
               Cow position:chr29:28195572-28195405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):26, 38

               
               
               Conread position:20-198
               
               
               Cow position:chr29:31928926-31929112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):26, 121

               
               
               Conread position:20-201
               
               
               Cow position:chr29:12309950-12310136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):43, 16

               
               
               Conread position:20-201
               
               
               Cow position:chr29:20167363-20167553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):39, 18

               
               
               Conread position:20-201
               
               
               Cow position:chr29:30227332-30227154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr29:5046593-5046788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):22, 41

               
               
               Conread position:20-207
               
               
               Cow position:chr29:18450194-18450006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:20-207
               
               
               Cow position:chr29:30440872-30441071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 144

               
               
               Conread position:20-207
               
               
               Cow position:chr29:35084281-35084090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):37, 166

               
               
               Conread position:20-209
               
               
               Cow position:chr29:501140-501333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-209
               
               
               Cow position:chr29:24292811-24293003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):68, 165

               
               
               Conread position:20-213
               
               
               Cow position:chr29:5995160-5994956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):23, 115

               
               
               Conread position:20-213
               
               
               Cow position:chr29:18404174-18403979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:20-266
               
               
               Cow position:chr29:32290549-32290797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):39, 173

               
               
               Conread position:20-307
               
               
               Cow position:chr29:40299073-40298795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:21-188
               
               
               Cow position:chr29:42630063-42630234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):27, 151

               
               
               Conread position:21-223
               
               
               Cow position:chr29:1022237-1022445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):34, 160

               
               
               Conread position:22-188
               
               
               Cow position:chr29:44378472-44378304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):25, 107

               
               
               Conread position:22-195
               
               
               Cow position:chr29:23825611-23825794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):27, 169

               
               
               Conread position:35-186
               
               
               Cow position:chr29:4120812-4120967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:35-207
               
               
               Cow position:chr29:36357088-36357260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):44, 22

               
               
               Conread position:36-169
               
               
               Cow position:chr29:19559065-19558923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:36-201
               
               
               Cow position:chr29:23825252-23825082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:37-188
               
               
               Cow position:chr29:36220495-36220649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):56, 25

               
               
               Conread position:37-209
               
               
               Cow position:chr29:24188100-24187931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):51, 13

               
               
               Conread position:37-221
               
               
               Cow position:chr29:23155189-23155375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):53, 23

               
               
               Conread position:38-195
               
               
               Cow position:chr29:38581932-38582090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 49

               
               
               Conread position:38-199
               
               
               Cow position:chr29:4874921-4874754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):52, 24

               
               
               Conread position:39-200
               
               
               Cow position:chr29:35501691-35501528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):54, 23

               
               
               Conread position:39-201
               
               
               Cow position:chr29:19949272-19949435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 23

               
               
               Conread position:39-307
               
               
               Cow position:chr29:8841515-8841248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):72, 25

               
               
               Conread position:39-311
               
               
               Cow position:chr29:11042395-11042648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):40, 14

               
               
               Conread position:40-175
               
               
               Cow position:chr29:8686294-8686432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:40-201
               
               
               Cow position:chr29:25737450-25737285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:40-204
               
               
               Cow position:chr29:4070590-4070755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):12, 49

               
               
               Conread position:41-192
               
               
               Cow position:chr29:17154743-17154897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:41-201
               
               
               Cow position:chr29:31934344-31934507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):52, 16

               
               
               Conread position:43-201
               
               
               Cow position:chr29:20604668-20604507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:45-196
               
               
               Cow position:chr29:5520516-5520362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):36, 12

               
               
               Conread position:45-198
               
               
               Cow position:chr29:31981799-31981953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):48, 140

               
               
               Conread position:46-194
               
               
               Cow position:chr29:40791279-40791424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:46-201
               
               
               Cow position:chr29:17109930-17110085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:46-210
               
               
               Cow position:chr29:42883991-42883820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 105

               
               
               Conread position:46-301
               
               
               Cow position:chr29:16365920-16365657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 198

               
               
               Conread position:47-221
               
               
               Cow position:chr29:21509819-21509997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):12, 136

               
               
               Conread position:48-184
               
               
               Cow position:chr29:4423468-4423328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:50-207
               
               
               Cow position:chr29:9310573-9310734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:50-308
               
               
               Cow position:chr29:39329630-39329380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):43, 145

               
               
               Conread position:51-204
               
               
               Cow position:chr29:16278962-16279112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):42, 109

               
               
               Conread position:51-307
               
               
               Cow position:chr29:11527815-11527569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:54-200
               
               
               Cow position:chr29:29308595-29308447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):19, 129

               
               
               Conread position:54-201
               
               
               Cow position:chr29:38754963-38754808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:54-300
               
               
               Cow position:chr29:34760436-34760207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):39, 51

               
               
               Conread position:56-196
               
               
               Cow position:chr29:3292927-3293070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 118

               
               
               Conread position:56-307
               
               
               Cow position:chr29:683511-683257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:57-184
               
               
               Cow position:chr29:5789009-5789139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 67

               
               
               Conread position:57-184
               
               
               Cow position:chr29:27819199-27819329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 117

               
               
               Conread position:57-196
               
               
               Cow position:chr29:396393-396529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 44

               
               
               Conread position:57-201
               
               
               Cow position:chr29:44684083-44684225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):53, 29

               
               
               Conread position:57-207
               
               
               Cow position:chr29:8163847-8163695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:58-196
               
               
               Cow position:chr29:34517502-34517368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:59-207
               
               
               Cow position:chr29:16200496-16200344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:59-207
               
               
               Cow position:chr29:29974032-29973881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:61-208
               
               
               Cow position:chr29:34359836-34359687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):26, 137

               
               
               Conread position:61-210
               
               
               Cow position:chr29:24051397-24051245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):32, 80

               
               
               Conread position:63-196
               
               
               Cow position:chr29:1220145-1220008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:64-188
               
               
               Cow position:chr29:28420743-28420870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:68-259
               
               
               Cow position:chr29:16672482-16672675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):25, 106

               
               
               Conread position:73-206
               
               
               Cow position:chr29:8799016-8798882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:76-310
               
               
               Cow position:chr29:19742457-19742677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):34, 10

               
               
               Conread position:78-188
               
               
               Cow position:chr29:35636665-35636773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):10, 32

               
               
               Conread position:78-242
               
               
               Cow position:chr29:6870759-6870598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):107, 8

               
               
               Conread position:79-174
               
               
               Cow position:chr29:39285499-39285596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:84
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-188
               
               
               Cow position:chr29:629542-629653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-201
               
               
               Cow position:chr29:19420609-19420485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-221
               
               
               Cow position:chr29:19060080-19059937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):12, 79

               
               
               Conread position:80-214
               
               
               Cow position:chr29:26631048-26631182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):29, 14

               
               
               Conread position:82-206
               
               
               Cow position:chr29:18878474-18878348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:82-310
               
               
               Cow position:chr29:19061765-19061558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):29, 8

               
               
               Conread position:83-208
               
               
               Cow position:chr29:3538666-3538542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:85-213
               
               
               Cow position:chr29:35737316-35737187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):25, 97

               
               
               Conread position:86-201
               
               
               Cow position:chr29:14576871-14576987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:86-213
               
               
               Cow position:chr29:33393690-33393818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-237
               
               
               Cow position:chr29:28559392-28559543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):16, 61

               
               
               Conread position:86-237
               
               
               Cow position:chr29:32301763-32301915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:86-311
               
               
               Cow position:chr29:18579823-18579614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:88-309
               
               
               Cow position:chr29:29940654-29940871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 94

               
               
               Conread position:88-311
               
               
               Cow position:chr29:17022164-17022387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):24, 149

               
               
               Conread position:94-198
               
               
               Cow position:chr29:28242321-28242218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):16, 59

               
               
               Conread position:119-304
               
               
               Cow position:chr29:6034095-6033915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:125-309
               
               
               Cow position:chr29:28734081-28733905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):177, 52

               
               
               Conread position:134-312
               
               
               Cow position:chr29:8270513-8270695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:135-309
               
               
               Cow position:chr29:2623444-2623277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:136-308
               
               
               Cow position:chr29:18294407-18294575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):8, 34

               
               
               Conread position:142-319
               
               
               Cow position:chr29:6271685-6271861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):97, 61

               
               
               Conread position:188-335
               
               
               Cow position:chr29:32766813-32766663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:192-304
               
               
               Cow position:chr29:2523269-2523382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:208-304
               
               
               Cow position:chr29:2720952-2720857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:82
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:1-168
               
               
               Cow position:chr3:78896547-78896720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:1-178
               
               
               Cow position:chr3:74502428-74502242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:1-179
               
               
               Cow position:chr3:38347095-38347274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):48, 16

               
               
               Conread position:1-182
               
               
               Cow position:chr3:17895738-17895935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 161

               
               
               Conread position:1-184
               
               
               Cow position:chr3:27727938-27727742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr3:59000860-59000666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):18, 114

               
               
               Conread position:1-192
               
               
               Cow position:chr3:5374232-5374423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):58, 42

               
               
               Conread position:1-192
               
               
               Cow position:chr3:60389665-60389862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):52, 158

               
               
               Conread position:1-197
               
               
               Cow position:chr3:3889675-3889468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):20, 81

               
               
               Conread position:1-197
               
               
               Cow position:chr3:11987228-11987431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:1-198
               
               
               Cow position:chr3:49679031-49679236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:1-198
               
               
               Cow position:chr3:59597081-59597281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):21, 92

               
               
               Conread position:1-201
               
               
               Cow position:chr3:7337882-7337678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:1-201
               
               
               Cow position:chr3:8733457-8733253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):18, 97

               
               
               Conread position:1-201
               
               
               Cow position:chr3:20674974-20674774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 132

               
               
               Conread position:1-201
               
               
               Cow position:chr3:56476578-56476788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1-201
               
               
               Cow position:chr3:63179754-63179960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 136

               
               
               Conread position:1-202
               
               
               Cow position:chr3:59604742-59604950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-204
               
               
               Cow position:chr3:75050728-75050509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr3:14801639-14801856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr3:54373959-54373748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):39, 58

               
               
               Conread position:1-212
               
               
               Cow position:chr3:16254932-16254726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):14, 57

               
               
               Conread position:1-215
               
               
               Cow position:chr3:53046765-53046543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):21, 112

               
               
               Conread position:1-221
               
               
               Cow position:chr3:74846812-74846582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):45, 188

               
               
               Conread position:1-221
               
               
               Cow position:chr3:80072024-80072253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):21, 69

               
               
               Conread position:1-227
               
               
               Cow position:chr3:48362976-48363206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):48, 37

               
               
               Conread position:1-237
               
               
               Cow position:chr3:26920807-26921046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):62, 185

               
               
               Conread position:1-263
               
               
               Cow position:chr3:80053641-80053378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):21, 61

               
               
               Conread position:1-284
               
               
               Cow position:chr3:16928930-16929208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):52, 112

               
               
               Conread position:1-296
               
               
               Cow position:chr3:59691790-59692089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):17, 46

               
               
               Conread position:1-304
               
               
               Cow position:chr3:67543968-67543668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):63, 185

               
               
               Conread position:1-309
               
               
               Cow position:chr3:17447717-17447400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:1-310
               
               
               Cow position:chr3:10677741-10677432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:217
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):21, 159

               
               
               Conread position:1-311
               
               
               Cow position:chr3:1785344-1785040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):50, 63

               
               
               Conread position:1-318
               
               
               Cow position:chr3:15506343-15506676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):22, 128

               
               
               Conread position:1-320
               
               
               Cow position:chr3:17935043-17934716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 279

               
               
               Conread position:2-184
               
               
               Cow position:chr3:18725743-18725555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):23, 57

               
               
               Conread position:3-187
               
               
               Cow position:chr3:39873796-39873604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):28, 166

               
               
               Conread position:3-188
               
               
               Cow position:chr3:6182312-6182134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):96, 35

               
               
               Conread position:3-198
               
               
               Cow position:chr3:8393249-8393448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):20, 114

               
               
               Conread position:3-206
               
               
               Cow position:chr3:81087733-81087528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):19, 49

               
               
               Conread position:3-237
               
               
               Cow position:chr3:58973197-58973440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):40, 21

               
               
               Conread position:4-188
               
               
               Cow position:chr3:36375639-36375447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):39, 93

               
               
               Conread position:4-195
               
               
               Cow position:chr3:82461081-82461279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:4-197
               
               
               Cow position:chr3:64281029-64280829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 171

               
               
               Conread position:4-221
               
               
               Cow position:chr3:47753124-47753346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 187

               
               
               Conread position:4-307
               
               
               Cow position:chr3:30222090-30222389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):51, 186

               
               
               Conread position:5-163
               
               
               Cow position:chr3:20437748-20437588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):80, 34

               
               
               Conread position:5-170
               
               
               Cow position:chr3:3638091-3638253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:5-174
               
               
               Cow position:chr3:56473-56298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 55

               
               
               Conread position:5-174
               
               
               Cow position:chr3:58968996-58968824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):44, 22

               
               
               Conread position:5-175
               
               
               Cow position:chr3:72675996-72676171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:5-175
               
               
               Cow position:chr3:79292733-79292908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):48, 37

               
               
               Conread position:5-176
               
               
               Cow position:chr3:5097110-5097288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:5-176
               
               
               Cow position:chr3:26981970-26982138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):88, 25

               
               
               Conread position:5-176
               
               
               Cow position:chr3:55109713-55109532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-176
               
               
               Cow position:chr3:72390989-72391163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):81, 57

               
               
               Conread position:5-177
               
               
               Cow position:chr3:1517609-1517430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:5-182
               
               
               Cow position:chr3:71231302-71231482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):47, 38

               
               
               Conread position:5-184
               
               
               Cow position:chr3:51234192-51234007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr3:52652178-52651991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):54, 103

               
               
               Conread position:5-184
               
               
               Cow position:chr3:58765175-58764986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr3:59588423-59588599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):106, 33

               
               
               Conread position:5-186
               
               
               Cow position:chr3:26960686-26960497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):48, 33

               
               
               Conread position:5-186
               
               
               Cow position:chr3:73395025-73395207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):81, 52

               
               
               Conread position:5-187
               
               
               Cow position:chr3:3818698-3818874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):46, 38

               
               
               Conread position:5-188
               
               
               Cow position:chr3:3738391-3738574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):97, 30

               
               
               Conread position:5-188
               
               
               Cow position:chr3:34270819-34271007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):51, 104

               
               
               Conread position:5-188
               
               
               Cow position:chr3:49650290-49650481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr3:4050098-4050287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):58, 78

               
               
               Conread position:5-189
               
               
               Cow position:chr3:5365581-5365771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr3:53150232-53150425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):33, 92

               
               
               Conread position:5-190
               
               
               Cow position:chr3:48252788-48252980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 24

               
               
               Conread position:5-196
               
               
               Cow position:chr3:38783520-38783707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):85, 33

               
               
               Conread position:5-196
               
               
               Cow position:chr3:56678450-56678249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):44, 32

               
               
               Conread position:5-196
               
               
               Cow position:chr3:68708100-68707912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 30

               
               
               Conread position:5-197
               
               
               Cow position:chr3:77582013-77582207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):53, 102

               
               
               Conread position:5-198
               
               
               Cow position:chr3:23408448-23408255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:5-198
               
               
               Cow position:chr3:24935274-24935467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):81, 26

               
               
               Conread position:5-198
               
               
               Cow position:chr3:31225342-31225535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):47, 38

               
               
               Conread position:5-198
               
               
               Cow position:chr3:53910016-53910211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):43, 20

               
               
               Conread position:5-198
               
               
               Cow position:chr3:55010260-55010063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 86

               
               
               Conread position:5-198
               
               
               Cow position:chr3:57273969-57274164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):88, 23

               
               
               Conread position:5-198
               
               
               Cow position:chr3:59884168-59883965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr3:60264814-60264613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):34, 64

               
               
               Conread position:5-200
               
               
               Cow position:chr3:68881208-68881019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:5-201
               
               
               Cow position:chr3:2393059-2392862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):58, 91

               
               
               Conread position:5-201
               
               
               Cow position:chr3:14465809-14465601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):49, 32

               
               
               Conread position:5-201
               
               
               Cow position:chr3:15951008-15950809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 33

               
               
               Conread position:5-201
               
               
               Cow position:chr3:22221223-22221433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr3:23471563-23471352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr3:28898318-28898116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr3:44101875-44102074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):88, 57

               
               
               Conread position:5-201
               
               
               Cow position:chr3:65058605-65058803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):47, 84

               
               
               Conread position:5-201
               
               
               Cow position:chr3:78093480-78093283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:5-203
               
               
               Cow position:chr3:46541924-46541718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):48, 21

               
               
               Conread position:5-204
               
               
               Cow position:chr3:7566521-7566309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):43, 202

               
               
               Conread position:5-204
               
               
               Cow position:chr3:8393840-8394053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-204
               
               
               Cow position:chr3:48241520-48241722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:5-204
               
               
               Cow position:chr3:60597445-60597649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):54, 112

               
               
               Conread position:5-205
               
               
               Cow position:chr3:77365394-77365178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:5-206
               
               
               Cow position:chr3:3316909-3316707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):33, 58

               
               
               Conread position:5-206
               
               
               Cow position:chr3:4319615-4319821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):48, 181

               
               
               Conread position:5-206
               
               
               Cow position:chr3:48468086-48468284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 40

               
               
               Conread position:5-206
               
               
               Cow position:chr3:53592790-53592578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:5-206
               
               
               Cow position:chr3:59034941-59035151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:5-206
               
               
               Cow position:chr3:65413376-65413166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):48, 38

               
               
               Conread position:5-206
               
               
               Cow position:chr3:71497240-71497025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr3:210219-210431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):17, 10

               
               
               Conread position:5-207
               
               
               Cow position:chr3:1830671-1830464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):49, 111

               
               
               Conread position:5-207
               
               
               Cow position:chr3:2506572-2506367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):81, 38

               
               
               Conread position:5-207
               
               
               Cow position:chr3:3032309-3032518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):41, 195

               
               
               Conread position:5-207
               
               
               Cow position:chr3:3656417-3656627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr3:15443826-15443617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:167
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr3:15954183-15953973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr3:18067039-18067244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):38, 93

               
               
               Conread position:5-207
               
               
               Cow position:chr3:21015057-21014844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 63

               
               
               Conread position:5-207
               
               
               Cow position:chr3:24468475-24468273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):106, 88

               
               
               Conread position:5-207
               
               
               Cow position:chr3:31309450-31309242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr3:45211198-45211413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:5-207
               
               
               Cow position:chr3:45881807-45882008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):86, 33

               
               
               Conread position:5-207
               
               
               Cow position:chr3:53270733-53270942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr3:72342148-72342357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr3:77271370-77271169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):74, 38

               
               
               Conread position:5-209
               
               
               Cow position:chr3:5366674-5366880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:5-209
               
               
               Cow position:chr3:7661756-7661966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):23, 92

               
               
               Conread position:5-209
               
               
               Cow position:chr3:55124380-55124172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 166

               
               
               Conread position:5-210
               
               
               Cow position:chr3:53113077-53113290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 32

               
               
               Conread position:5-213
               
               
               Cow position:chr3:17235306-17235099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):72, 49

               
               
               Conread position:5-214
               
               
               Cow position:chr3:53318308-53318520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):83, 57

               
               
               Conread position:5-214
               
               
               Cow position:chr3:73820466-73820252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):31, 19

               
               
               Conread position:5-215
               
               
               Cow position:chr3:58318050-58317828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-219
               
               
               Cow position:chr3:55983998-55984220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):41, 130

               
               
               Conread position:5-222
               
               
               Cow position:chr3:70401805-70402023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):85, 38

               
               
               Conread position:5-222
               
               
               Cow position:chr3:76713420-76713192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):41, 94

               
               
               Conread position:5-223
               
               
               Cow position:chr3:32457104-32457319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):88, 46

               
               
               Conread position:5-223
               
               
               Cow position:chr3:57764131-57764347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):85, 40

               
               
               Conread position:5-236
               
               
               Cow position:chr3:49790906-49790672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):58, 32

               
               
               Conread position:5-240
               
               
               Cow position:chr3:66884036-66883793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):58, 30

               
               
               Conread position:5-247
               
               
               Cow position:chr3:28908300-28908058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):41, 183

               
               
               Conread position:5-263
               
               
               Cow position:chr3:60265337-60265087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:5-270
               
               
               Cow position:chr3:13507368-13507646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:5-288
               
               
               Cow position:chr3:84175922-84175640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 184

               
               
               Conread position:5-298
               
               
               Cow position:chr3:67930279-67930001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):44, 109

               
               
               Conread position:5-299
               
               
               Cow position:chr3:35621206-35621491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):50, 93

               
               
               Conread position:5-304
               
               
               Cow position:chr3:33329717-33330010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 188

               
               
               Conread position:5-304
               
               
               Cow position:chr3:49382851-49383146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):47, 183

               
               
               Conread position:5-307
               
               
               Cow position:chr3:78945931-78945644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):41, 60

               
               
               Conread position:5-308
               
               
               Cow position:chr3:59621743-59621431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:5-309
               
               
               Cow position:chr3:53508517-53508822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:224
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):11, 37

               
               
               Conread position:5-310
               
               
               Cow position:chr3:14626253-14625938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):46, 38

               
               
               Conread position:5-310
               
               
               Cow position:chr3:70899798-70900094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):36, 148

               
               
               Conread position:5-311
               
               
               Cow position:chr3:26230000-26230333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):53, 38

               
               
               Conread position:5-311
               
               
               Cow position:chr3:54100817-54100531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 38

               
               
               Conread position:5-311
               
               
               Cow position:chr3:59630598-59630298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):105, 45

               
               
               Conread position:5-311
               
               
               Cow position:chr3:61278819-61279119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 41

               
               
               Conread position:5-311
               
               
               Cow position:chr3:81471191-81470883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):54, 20

               
               
               Conread position:6-196
               
               
               Cow position:chr3:75778157-75777959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:6-200
               
               
               Cow position:chr3:83490991-83491192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):15, 11

               
               
               Conread position:6-204
               
               
               Cow position:chr3:39996984-39996779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 37

               
               
               Conread position:6-209
               
               
               Cow position:chr3:80581569-80581769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:6-216
               
               
               Cow position:chr3:23169162-23168949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):37, 86

               
               
               Conread position:6-223
               
               
               Cow position:chr3:26874497-26874717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):37, 93

               
               
               Conread position:6-230
               
               
               Cow position:chr3:52017673-52017908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:7-149
               
               
               Cow position:chr3:74878683-74878535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:7-195
               
               
               Cow position:chr3:23920523-23920329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 36

               
               
               Conread position:7-197
               
               
               Cow position:chr3:14552782-14552977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:7-198
               
               
               Cow position:chr3:33693723-33693922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):23, 39

               
               
               Conread position:7-200
               
               
               Cow position:chr3:3985233-3985428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):45, 90

               
               
               Conread position:7-200
               
               
               Cow position:chr3:20677929-20677737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):86, 43

               
               
               Conread position:7-201
               
               
               Cow position:chr3:51578415-51578220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):76, 135

               
               
               Conread position:7-204
               
               
               Cow position:chr3:71238062-71238262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):84, 124

               
               
               Conread position:7-207
               
               
               Cow position:chr3:2674934-2675141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:7-213
               
               
               Cow position:chr3:38691501-38691290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):45, 180

               
               
               Conread position:7-221
               
               
               Cow position:chr3:12712012-12711794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):39, 193

               
               
               Conread position:8-182
               
               
               Cow position:chr3:59474026-59474209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:8-189
               
               
               Cow position:chr3:2216272-2216462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):43, 29

               
               
               Conread position:9-205
               
               
               Cow position:chr3:36160288-36160083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:12-201
               
               
               Cow position:chr3:8061036-8061231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):38, 105

               
               
               Conread position:12-207
               
               
               Cow position:chr3:30463261-30463066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):10, 25

               
               
               Conread position:13-165
               
               
               Cow position:chr3:23444985-23444818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:13-189
               
               
               Cow position:chr3:61323241-61323425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):9, 32

               
               
               Conread position:13-217
               
               
               Cow position:chr3:22232742-22232537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):9, 98

               
               
               Conread position:14-184
               
               
               Cow position:chr3:83928159-83928335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:15-198
               
               
               Cow position:chr3:18059613-18059806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:15-209
               
               
               Cow position:chr3:66900823-66900619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:15-231
               
               
               Cow position:chr3:48296623-48296833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):34, 49

               
               
               Conread position:15-308
               
               
               Cow position:chr3:73443173-73442878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):37, 50

               
               
               Conread position:15-311
               
               
               Cow position:chr3:48810727-48810455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):78, 31

               
               
               Conread position:15-319
               
               
               Cow position:chr3:13301934-13301640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):75, 153

               
               
               Conread position:17-173
               
               
               Cow position:chr3:81277555-81277390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:17-177
               
               
               Cow position:chr3:67520256-67520084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:17-195
               
               
               Cow position:chr3:11640643-11640833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:17-207
               
               
               Cow position:chr3:14601796-14601594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 26

               
               
               Conread position:17-207
               
               
               Cow position:chr3:51033282-51033482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:19-195
               
               
               Cow position:chr3:53739268-53739085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:19-197
               
               
               Cow position:chr3:19793672-19793489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):27, 10

               
               
               Conread position:19-201
               
               
               Cow position:chr3:23203318-23203126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):27, 135

               
               
               Conread position:19-296
               
               
               Cow position:chr3:11606236-11606529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):69, 26

               
               
               Conread position:20-177
               
               
               Cow position:chr3:20802705-20802549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):30, 79

               
               
               Conread position:20-184
               
               
               Cow position:chr3:73764276-73764111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 23

               
               
               Conread position:20-189
               
               
               Cow position:chr3:29360227-29360057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):26, 93

               
               
               Conread position:20-189
               
               
               Cow position:chr3:58767178-58767357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-189
               
               
               Cow position:chr3:65019947-65019773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 154

               
               
               Conread position:20-190
               
               
               Cow position:chr3:37599508-37599333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:20-195
               
               
               Cow position:chr3:15228902-15228724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:20-195
               
               
               Cow position:chr3:72503980-72503796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:20-196
               
               
               Cow position:chr3:48478114-48477935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):26, 122

               
               
               Conread position:20-196
               
               
               Cow position:chr3:73299005-73299180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):66, 23

               
               
               Conread position:20-197
               
               
               Cow position:chr3:74900720-74900541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):32, 130

               
               
               Conread position:20-198
               
               
               Cow position:chr3:29813163-29813335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):69, 39

               
               
               Conread position:20-198
               
               
               Cow position:chr3:58527312-58527485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):74, 23

               
               
               Conread position:20-198
               
               
               Cow position:chr3:84250626-84250441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):28, 98

               
               
               Conread position:20-201
               
               
               Cow position:chr3:17058622-17058440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):66, 45

               
               
               Conread position:20-201
               
               
               Cow position:chr3:23804435-23804612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 75

               
               
               Conread position:20-201
               
               
               Cow position:chr3:57577616-57577800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 143

               
               
               Conread position:20-201
               
               
               Cow position:chr3:65969080-65969273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:20-201
               
               
               Cow position:chr3:70334045-70333866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 23

               
               
               Conread position:20-201
               
               
               Cow position:chr3:76268060-76267869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:20-204
               
               
               Cow position:chr3:18686826-18687013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):29, 165

               
               
               Conread position:20-207
               
               
               Cow position:chr3:40145385-40145576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):28, 18

               
               
               Conread position:20-207
               
               
               Cow position:chr3:75238376-75238569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:20-208
               
               
               Cow position:chr3:52863265-52863070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-209
               
               
               Cow position:chr3:46006096-46005908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):73, 44

               
               
               Conread position:20-209
               
               
               Cow position:chr3:53875843-53875653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):68, 18

               
               
               Conread position:20-209
               
               
               Cow position:chr3:83215178-83215376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-209
               
               
               Cow position:chr3:83988449-83988646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):26, 126

               
               
               Conread position:20-212
               
               
               Cow position:chr3:45667426-45667228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:20-220
               
               
               Cow position:chr3:66631432-66631227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:20-238
               
               
               Cow position:chr3:75045958-75045731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):26, 96

               
               
               Conread position:20-292
               
               
               Cow position:chr3:5100848-5100586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):73, 23

               
               
               Conread position:20-301
               
               
               Cow position:chr3:31850454-31850163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):33, 93

               
               
               Conread position:20-301
               
               
               Cow position:chr3:46901116-46901410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:218
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):59, 30

               
               
               Conread position:20-311
               
               
               Cow position:chr3:57624383-57624691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:20-314
               
               
               Cow position:chr3:53704048-53703762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):26, 159

               
               
               Conread position:21-179
               
               
               Cow position:chr3:34669807-34669649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):28, 60

               
               
               Conread position:21-180
               
               
               Cow position:chr3:58134768-58134601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:21-204
               
               
               Cow position:chr3:30180001-30180195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:21-207
               
               
               Cow position:chr3:49482787-49482603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):68, 17

               
               
               Conread position:21-220
               
               
               Cow position:chr3:37041334-37041542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):37, 176

               
               
               Conread position:21-236
               
               
               Cow position:chr3:14263314-14263532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 16

               
               
               Conread position:21-313
               
               
               Cow position:chr3:10103966-10104251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):72, 21

               
               
               Conread position:22-176
               
               
               Cow position:chr3:62046581-62046745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:22-187
               
               
               Cow position:chr3:27976606-27976432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:22-198
               
               
               Cow position:chr3:82056188-82056016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:22-204
               
               
               Cow position:chr3:76269817-76270000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 16

               
               
               Conread position:22-207
               
               
               Cow position:chr3:9663251-9663060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):29, 16

               
               
               Conread position:23-188
               
               
               Cow position:chr3:23667544-23667713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):65, 152

               
               
               Conread position:23-189
               
               
               Cow position:chr3:73708969-73709140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):20, 37

               
               
               Conread position:23-194
               
               
               Cow position:chr3:10668958-10668780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):39, 15

               
               
               Conread position:23-196
               
               
               Cow position:chr3:82366055-82366229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):65, 15

               
               
               Conread position:23-217
               
               
               Cow position:chr3:74134621-74134826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:24-208
               
               
               Cow position:chr3:79645518-79645317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:24-311
               
               
               Cow position:chr3:2680440-2680721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):29, 14

               
               
               Conread position:24-311
               
               
               Cow position:chr3:57760422-57760704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):22, 171

               
               
               Conread position:25-198
               
               
               Cow position:chr3:14546924-14547103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 125

               
               
               Conread position:25-209
               
               
               Cow position:chr3:19711411-19711227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 18

               
               
               Conread position:26-184
               
               
               Cow position:chr3:18459596-18459439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):67, 12

               
               
               Conread position:26-185
               
               
               Cow position:chr3:55085249-55085079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:26-196
               
               
               Cow position:chr3:15160450-15160621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:29-187
               
               
               Cow position:chr3:27940211-27940051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):30, 78

               
               
               Conread position:30-196
               
               
               Cow position:chr3:28735585-28735412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):25, 107

               
               
               Conread position:30-208
               
               
               Cow position:chr3:35074811-35074988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):29, 46

               
               
               Conread position:31-189
               
               
               Cow position:chr3:39248093-39247928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:32-204
               
               
               Cow position:chr3:2483932-2484113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:33-308
               
               
               Cow position:chr3:9588707-9588443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 28

               
               
               Conread position:34-198
               
               
               Cow position:chr3:20841939-20841768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):18, 126

               
               
               Conread position:34-210
               
               
               Cow position:chr3:16752328-16752144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:34-223
               
               
               Cow position:chr3:54067729-54067923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):13, 32

               
               
               Conread position:34-301
               
               
               Cow position:chr3:25691963-25692234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):39, 68

               
               
               Conread position:35-192
               
               
               Cow position:chr3:11292310-11292151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):58, 21

               
               
               Conread position:35-196
               
               
               Cow position:chr3:15153627-15153792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:35-207
               
               
               Cow position:chr3:9026148-9025974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):52, 97

               
               
               Conread position:36-196
               
               
               Cow position:chr3:84174239-84174402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 23

               
               
               Conread position:36-216
               
               
               Cow position:chr3:56704387-56704200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:36-310
               
               
               Cow position:chr3:61467252-61466989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):57, 21

               
               
               Conread position:37-207
               
               
               Cow position:chr3:48900395-48900221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:37-207
               
               
               Cow position:chr3:79271772-79271599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:37-300
               
               
               Cow position:chr3:44330498-44330237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:38-207
               
               
               Cow position:chr3:68303255-68303427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:38-208
               
               
               Cow position:chr3:11229426-11229252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:39-201
               
               
               Cow position:chr3:51609244-51609077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:39-209
               
               
               Cow position:chr3:2025134-2025310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):20, 11

               
               
               Conread position:39-213
               
               
               Cow position:chr3:21997847-21997670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:39-300
               
               
               Cow position:chr3:36913988-36914241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):13, 157

               
               
               Conread position:40-198
               
               
               Cow position:chr3:56949148-56948985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:40-200
               
               
               Cow position:chr3:23753441-23753596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):148, 52

               
               
               Conread position:40-230
               
               
               Cow position:chr3:64373215-64373021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:40-304
               
               
               Cow position:chr3:57877507-57877776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:41-201
               
               
               Cow position:chr3:69650947-69650783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:42-200
               
               
               Cow position:chr3:81234329-81234494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:42-201
               
               
               Cow position:chr3:40213090-40212928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:42-214
               
               
               Cow position:chr3:72745621-72745445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 150

               
               
               Conread position:45-184
               
               
               Cow position:chr3:5249430-5249293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):66, 12

               
               
               Conread position:46-188
               
               
               Cow position:chr3:68059259-68059407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 125

               
               
               Conread position:46-194
               
               
               Cow position:chr3:15237743-15237598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):45, 11

               
               
               Conread position:46-195
               
               
               Cow position:chr3:67959971-67959822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):12, 49

               
               
               Conread position:46-198
               
               
               Cow position:chr3:71423604-71423452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):47, 59

               
               
               Conread position:46-209
               
               
               Cow position:chr3:74787378-74787540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 64

               
               
               Conread position:46-287
               
               
               Cow position:chr3:82629264-82629512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:46-304
               
               
               Cow position:chr3:59208752-59209001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):193, 20

               
               
               Conread position:46-309
               
               
               Cow position:chr3:7427950-7428216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):33, 11

               
               
               Conread position:47-209
               
               
               Cow position:chr3:2637871-2638042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:48-207
               
               
               Cow position:chr3:3556490-3556657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:48-308
               
               
               Cow position:chr3:58940076-58940342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):37, 9

               
               
               Conread position:49-220
               
               
               Cow position:chr3:59919983-59920151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:50-185
               
               
               Cow position:chr3:51349775-51349913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:50-197
               
               
               Cow position:chr3:5040356-5040207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 120

               
               
               Conread position:50-198
               
               
               Cow position:chr3:22165463-22165313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:50-207
               
               
               Cow position:chr3:73467582-73467747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:50-240
               
               
               Cow position:chr3:8901581-8901772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):56, 52

               
               
               Conread position:51-201
               
               
               Cow position:chr3:33252937-33252783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:51-207
               
               
               Cow position:chr3:9120797-9120954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:51-214
               
               
               Cow position:chr3:5305751-5305918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:51-266
               
               
               Cow position:chr3:77589471-77589684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:52-207
               
               
               Cow position:chr3:621403-621546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:53-196
               
               
               Cow position:chr3:35624590-35624445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:53-213
               
               
               Cow position:chr3:8814158-8813994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):37, 16

               
               
               Conread position:57-187
               
               
               Cow position:chr3:74644515-74644649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:57-188
               
               
               Cow position:chr3:20515860-20515725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:57-196
               
               
               Cow position:chr3:21641946-21642088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:57-197
               
               
               Cow position:chr3:19792863-19793007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):36, 89

               
               
               Conread position:57-198
               
               
               Cow position:chr3:54905576-54905718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):34, 48

               
               
               Conread position:57-201
               
               
               Cow position:chr3:15973524-15973673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-201
               
               
               Cow position:chr3:68130325-68130186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):38, 48

               
               
               Conread position:57-204
               
               
               Cow position:chr3:52456876-52457020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):36, 102

               
               
               Conread position:57-204
               
               
               Cow position:chr3:55712398-55712547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):33, 137

               
               
               Conread position:57-216
               
               
               Cow position:chr3:59828435-59828272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-228
               
               
               Cow position:chr3:63657903-63657730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 115

               
               
               Conread position:60-188
               
               
               Cow position:chr3:84137854-84137722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:61-204
               
               
               Cow position:chr3:41863586-41863734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:61-304
               
               
               Cow position:chr3:82360245-82360466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):33, 47

               
               
               Conread position:62-196
               
               
               Cow position:chr3:7581754-7581617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 92

               
               
               Conread position:62-204
               
               
               Cow position:chr3:46792348-46792496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:62-207
               
               
               Cow position:chr3:6728367-6728218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:63-189
               
               
               Cow position:chr3:4167307-4167182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:64-188
               
               
               Cow position:chr3:18831386-18831518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:64-201
               
               
               Cow position:chr3:28902794-28902655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):18, 113

               
               
               Conread position:65-201
               
               
               Cow position:chr3:44959908-44960048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:65-201
               
               
               Cow position:chr3:70756675-70756536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:65-214
               
               
               Cow position:chr3:46559749-46559598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 109

               
               
               Conread position:65-219
               
               
               Cow position:chr3:11705217-11705376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:67-207
               
               
               Cow position:chr3:5703146-5703285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 76

               
               
               Conread position:67-308
               
               
               Cow position:chr3:24371890-24372132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):35, 126

               
               
               Conread position:69-311
               
               
               Cow position:chr3:77006443-77006677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):28, 107

               
               
               Conread position:70-197
               
               
               Cow position:chr3:28897048-28896922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 82

               
               
               Conread position:71-214
               
               
               Cow position:chr3:39812023-39812172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):22, 34

               
               
               Conread position:71-222
               
               
               Cow position:chr3:75772771-75772923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):39, 18

               
               
               Conread position:73-201
               
               
               Cow position:chr3:76056311-76056179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:75-201
               
               
               Cow position:chr3:75966805-75966675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:78-207
               
               
               Cow position:chr3:29234701-29234568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:78-207
               
               
               Cow position:chr3:47199146-47199015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:78-207
               
               
               Cow position:chr3:62312777-62312907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):9, 42

               
               
               Conread position:78-207
               
               
               Cow position:chr3:62370036-62370166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):9, 45

               
               
               Conread position:79-207
               
               
               Cow position:chr3:18700129-18699999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:79-207
               
               
               Cow position:chr3:41366728-41366598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-208
               
               
               Cow position:chr3:59681922-59681791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-220
               
               
               Cow position:chr3:23037527-23037386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):16, 93

               
               
               Conread position:79-227
               
               
               Cow position:chr3:1534123-1533971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-305
               
               
               Cow position:chr3:15683168-15682921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):32, 11

               
               
               Conread position:81-301
               
               
               Cow position:chr3:15660306-15660107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):6, 21

               
               
               Conread position:82-189
               
               
               Cow position:chr3:80023324-80023217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):5, 33

               
               
               Conread position:82-207
               
               
               Cow position:chr3:61024038-61023911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:82-319
               
               
               Cow position:chr3:28937620-28937394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):5, 100

               
               
               Conread position:83-201
               
               
               Cow position:chr3:53192306-53192186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:84-311
               
               
               Cow position:chr3:54551538-54551318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):22, 91

               
               
               Conread position:86-198
               
               
               Cow position:chr3:70402634-70402746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):25, 44

               
               
               Conread position:86-201
               
               
               Cow position:chr3:28884171-28884055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):25, 64

               
               
               Conread position:86-201
               
               
               Cow position:chr3:59317692-59317807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 67

               
               
               Conread position:86-213
               
               
               Cow position:chr3:25702352-25702224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:86-213
               
               
               Cow position:chr3:65022284-65022412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-305
               
               
               Cow position:chr3:6853544-6853338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):16, 33

               
               
               Conread position:86-308
               
               
               Cow position:chr3:35285033-35285272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-311
               
               
               Cow position:chr3:49731526-49731314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):23, 68

               
               
               Conread position:86-311
               
               
               Cow position:chr3:78201600-78201829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):25, 67

               
               
               Conread position:87-310
               
               
               Cow position:chr3:2179110-2179332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):23, 31

               
               
               Conread position:87-311
               
               
               Cow position:chr3:28556171-28555939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:87-312
               
               
               Cow position:chr3:61133629-61133844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):23, 105

               
               
               Conread position:88-206
               
               
               Cow position:chr3:83199503-83199621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):22, 91

               
               
               Conread position:88-309
               
               
               Cow position:chr3:83504189-83504415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):123, 16

               
               
               Conread position:89-209
               
               
               Cow position:chr3:62186144-62186265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:89-296
               
               
               Cow position:chr3:52634101-52634312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:90-301
               
               
               Cow position:chr3:53256522-53256730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:170
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):20, 91

               
               
               Conread position:91-301
               
               
               Cow position:chr3:16177251-16177042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:92-217
               
               
               Cow position:chr3:83812268-83812391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):89, 17

               
               
               Conread position:92-265
               
               
               Cow position:chr3:27670409-27670588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):18, 162

               
               
               Conread position:92-292
               
               
               Cow position:chr3:68620927-68620717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:92-309
               
               
               Cow position:chr3:4086868-4086668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):18, 99

               
               
               Conread position:94-204
               
               
               Cow position:chr3:2016433-2016544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:94-312
               
               
               Cow position:chr3:13949561-13949355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 88

               
               
               Conread position:100-201
               
               
               Cow position:chr3:17039616-17039720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:100-244
               
               
               Cow position:chr3:57067612-57067757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):10, 90

               
               
               Conread position:102-200
               
               
               Cow position:chr3:79398148-79398247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:83
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:102-301
               
               
               Cow position:chr3:43428779-43428968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 30

               
               
               Conread position:108-304
               
               
               Cow position:chr3:57038311-57038100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:109-293
               
               
               Cow position:chr3:26565711-26565544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:110-311
               
               
               Cow position:chr3:44243535-44243731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):79, 159

               
               
               Conread position:116-293
               
               
               Cow position:chr3:62623175-62622990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):74, 24

               
               
               Conread position:116-304
               
               
               Cow position:chr3:2008272-2008453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:116-311
               
               
               Cow position:chr3:57627476-57627662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:128-304
               
               
               Cow position:chr3:21340780-21340602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):80, 11

               
               
               Conread position:128-308
               
               
               Cow position:chr3:48578837-48579003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):111, 63

               
               
               Conread position:138-308
               
               
               Cow position:chr3:623772-623929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:162-304
               
               
               Cow position:chr3:44839218-44839081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:187-311
               
               
               Cow position:chr3:75151329-75151204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:1-170
               
               
               Cow position:chr4:33395787-33395606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-179
               
               
               Cow position:chr4:68889649-68889460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:1-184
               
               
               Cow position:chr4:45589685-45589495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 161

               
               
               Conread position:1-184
               
               
               Cow position:chr4:49794580-49794765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):22, 45

               
               
               Conread position:1-187
               
               
               Cow position:chr4:48104649-48104460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):45, 24

               
               
               Conread position:1-194
               
               
               Cow position:chr4:45738565-45738359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-195
               
               
               Cow position:chr4:25888916-25888718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):21, 44

               
               
               Conread position:1-197
               
               
               Cow position:chr4:29384308-29384116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):17, 51

               
               
               Conread position:1-198
               
               
               Cow position:chr4:10968477-10968268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:1-201
               
               
               Cow position:chr4:42423893-42423682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-206
               
               
               Cow position:chr4:37502735-37502941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):18, 44

               
               
               Conread position:1-207
               
               
               Cow position:chr4:2774633-2774848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):83, 42

               
               
               Conread position:1-207
               
               
               Cow position:chr4:18974341-18974551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 25

               
               
               Conread position:1-207
               
               
               Cow position:chr4:24371944-24371731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):21, 171

               
               
               Conread position:1-207
               
               
               Cow position:chr4:28836443-28836663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):14, 167

               
               
               Conread position:1-207
               
               
               Cow position:chr4:62317359-62317574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):53, 37

               
               
               Conread position:1-207
               
               
               Cow position:chr4:63952250-63952039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 25

               
               
               Conread position:1-208
               
               
               Cow position:chr4:570704-570922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-208
               
               
               Cow position:chr4:59377822-59378039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:1-209
               
               
               Cow position:chr4:10915929-10915706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 177

               
               
               Conread position:1-209
               
               
               Cow position:chr4:59277568-59277349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):18, 70

               
               
               Conread position:1-220
               
               
               Cow position:chr4:35834565-35834339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):63, 37

               
               
               Conread position:1-220
               
               
               Cow position:chr4:45805362-45805137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):27, 63

               
               
               Conread position:1-228
               
               
               Cow position:chr4:22725012-22725241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):25, 67

               
               
               Conread position:1-311
               
               
               Cow position:chr4:45644394-45644088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):93, 37

               
               
               Conread position:2-198
               
               
               Cow position:chr4:65463582-65463389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):19, 64

               
               
               Conread position:2-308
               
               
               Cow position:chr4:10851532-10851226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):50, 21

               
               
               Conread position:3-201
               
               
               Cow position:chr4:19708848-19709062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:3-201
               
               
               Cow position:chr4:28772158-28771944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:3-208
               
               
               Cow position:chr4:16593998-16594210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):46, 186

               
               
               Conread position:3-311
               
               
               Cow position:chr4:65650215-65649879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 44

               
               
               Conread position:4-191
               
               
               Cow position:chr4:27755381-27755191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):86, 39

               
               
               Conread position:4-198
               
               
               Cow position:chr4:45705964-45706158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):39, 102

               
               
               Conread position:4-218
               
               
               Cow position:chr4:41185990-41185780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):50, 19

               
               
               Conread position:5-149
               
               
               Cow position:chr4:47041505-47041358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 45

               
               
               Conread position:5-157
               
               
               Cow position:chr4:11610796-11610949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):50, 38

               
               
               Conread position:5-166
               
               
               Cow position:chr4:65432068-65432238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-176
               
               
               Cow position:chr4:19292640-19292819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-177
               
               
               Cow position:chr4:51729872-51730046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):47, 160

               
               
               Conread position:5-179
               
               
               Cow position:chr4:37935364-37935184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:5-180
               
               
               Cow position:chr4:46183330-46183515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:5-183
               
               
               Cow position:chr4:20838-21017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):83, 38

               
               
               Conread position:5-183
               
               
               Cow position:chr4:5460946-5460757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):48, 181

               
               
               Conread position:5-184
               
               
               Cow position:chr4:20327791-20327603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr4:56570727-56570912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-185
               
               
               Cow position:chr4:66256607-66256793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):58, 29

               
               
               Conread position:5-186
               
               
               Cow position:chr4:27276625-27276436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-186
               
               
               Cow position:chr4:54789559-54789747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-187
               
               
               Cow position:chr4:10999787-10999607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):88, 45

               
               
               Conread position:5-188
               
               
               Cow position:chr4:1495484-1495299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):30, 79

               
               
               Conread position:5-188
               
               
               Cow position:chr4:24481750-24481563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):46, 111

               
               
               Conread position:5-189
               
               
               Cow position:chr4:3850472-3850662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr4:13222263-13222076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):53, 38

               
               
               Conread position:5-189
               
               
               Cow position:chr4:31506112-31505913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr4:61066694-61066876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 93

               
               
               Conread position:5-189
               
               
               Cow position:chr4:61313289-61313102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:5-191
               
               
               Cow position:chr4:13026222-13026414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):52, 169

               
               
               Conread position:5-192
               
               
               Cow position:chr4:34369534-34369337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):17, 186

               
               
               Conread position:5-195
               
               
               Cow position:chr4:69543103-69543299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-196
               
               
               Cow position:chr4:5964068-5963871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):88, 168

               
               
               Conread position:5-196
               
               
               Cow position:chr4:12004145-12004332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):86, 40

               
               
               Conread position:5-197
               
               
               Cow position:chr4:4084528-4084333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):54, 10

               
               
               Conread position:5-197
               
               
               Cow position:chr4:68764441-68764634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 89

               
               
               Conread position:5-198
               
               
               Cow position:chr4:34166057-34165861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):41, 126

               
               
               Conread position:5-198
               
               
               Cow position:chr4:34630813-34631019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr4:45626703-45626508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):85, 52

               
               
               Conread position:5-198
               
               
               Cow position:chr4:46494216-46494423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):53, 38

               
               
               Conread position:5-198
               
               
               Cow position:chr4:51769031-51769222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:5-200
               
               
               Cow position:chr4:20157497-20157296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 125

               
               
               Conread position:5-201
               
               
               Cow position:chr4:13941382-13941579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):47, 101

               
               
               Conread position:5-201
               
               
               Cow position:chr4:19578317-19578510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):122, 33

               
               
               Conread position:5-201
               
               
               Cow position:chr4:23509513-23509716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):41, 113

               
               
               Conread position:5-201
               
               
               Cow position:chr4:23600097-23600292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:5-201
               
               
               Cow position:chr4:23847128-23846929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):50, 166

               
               
               Conread position:5-201
               
               
               Cow position:chr4:32693704-32693911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr4:34211086-34211290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 152

               
               
               Conread position:5-201
               
               
               Cow position:chr4:38944338-38944135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr4:52779772-52779975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr4:54171548-54171750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr4:54455423-54455225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):37, 62

               
               
               Conread position:5-202
               
               
               Cow position:chr4:51727996-51728201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 64

               
               
               Conread position:5-204
               
               
               Cow position:chr4:20027186-20026977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 167

               
               
               Conread position:5-204
               
               
               Cow position:chr4:36290548-36290750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):88, 57

               
               
               Conread position:5-204
               
               
               Cow position:chr4:53126036-53126234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):45, 107

               
               
               Conread position:5-204
               
               
               Cow position:chr4:56239935-56239733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):88, 51

               
               
               Conread position:5-204
               
               
               Cow position:chr4:59785238-59785448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:5-206
               
               
               Cow position:chr4:17084421-17084213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):45, 174

               
               
               Conread position:5-206
               
               
               Cow position:chr4:21866388-21866598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:5-206
               
               
               Cow position:chr4:26400882-26401082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):75, 37

               
               
               Conread position:5-206
               
               
               Cow position:chr4:32458942-32458732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:5-206
               
               
               Cow position:chr4:45073984-45074187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):46, 21

               
               
               Conread position:5-206
               
               
               Cow position:chr4:45563662-45563874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):59, 38

               
               
               Conread position:5-206
               
               
               Cow position:chr4:60131142-60131353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr4:2099557-2099759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):86, 20

               
               
               Conread position:5-207
               
               
               Cow position:chr4:5577289-5577089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 159

               
               
               Conread position:5-207
               
               
               Cow position:chr4:11897378-11897177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):41, 94

               
               
               Conread position:5-207
               
               
               Cow position:chr4:15905018-15905231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:5-207
               
               
               Cow position:chr4:17186431-17186224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 75

               
               
               Conread position:5-207
               
               
               Cow position:chr4:23451175-23450965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:5-207
               
               
               Cow position:chr4:26323657-26323869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr4:27632370-27632568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 38

               
               
               Conread position:5-207
               
               
               Cow position:chr4:34383423-34383213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr4:61188950-61188741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):37, 47

               
               
               Conread position:5-207
               
               
               Cow position:chr4:64657376-64657174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 95

               
               
               Conread position:5-208
               
               
               Cow position:chr4:508988-508780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:5-208
               
               
               Cow position:chr4:61757600-61757791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:5-209
               
               
               Cow position:chr4:16814312-16814514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):81, 38

               
               
               Conread position:5-209
               
               
               Cow position:chr4:19102965-19102751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:5-209
               
               
               Cow position:chr4:19501169-19500962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):41, 49

               
               
               Conread position:5-209
               
               
               Cow position:chr4:43515646-43515845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):17, 12

               
               
               Conread position:5-209
               
               
               Cow position:chr4:46597298-46597499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):48, 92

               
               
               Conread position:5-210
               
               
               Cow position:chr4:48409350-48409138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):52, 33

               
               
               Conread position:5-212
               
               
               Cow position:chr4:13590008-13590218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:5-212
               
               
               Cow position:chr4:22345103-22344891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 136

               
               
               Conread position:5-213
               
               
               Cow position:chr4:18095750-18095538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):42, 83

               
               
               Conread position:5-213
               
               
               Cow position:chr4:32259925-32259708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:5-214
               
               
               Cow position:chr4:16762809-16762589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:5-214
               
               
               Cow position:chr4:19584637-19584839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):41, 90

               
               
               Conread position:5-214
               
               
               Cow position:chr4:36893277-36893494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):46, 27

               
               
               Conread position:5-214
               
               
               Cow position:chr4:45662589-45662381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):58, 38

               
               
               Conread position:5-214
               
               
               Cow position:chr4:65919533-65919744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 59

               
               
               Conread position:5-217
               
               
               Cow position:chr4:37313089-37313305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):46, 38

               
               
               Conread position:5-220
               
               
               Cow position:chr4:65815785-65815568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):42, 165

               
               
               Conread position:5-223
               
               
               Cow position:chr4:10732143-10732366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):61, 182

               
               
               Conread position:5-223
               
               
               Cow position:chr4:51784098-51784327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):16, 12

               
               
               Conread position:5-229
               
               
               Cow position:chr4:2602152-2602382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 121

               
               
               Conread position:5-229
               
               
               Cow position:chr4:45077158-45076927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):59, 212

               
               
               Conread position:5-229
               
               
               Cow position:chr4:45596110-45595880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 109

               
               
               Conread position:5-244
               
               
               Cow position:chr4:25879318-25879552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:5-294
               
               
               Cow position:chr4:65950575-65950876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:219
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:5-304
               
               
               Cow position:chr4:12901637-12901346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):48, 191

               
               
               Conread position:5-304
               
               
               Cow position:chr4:37675535-37675818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):49, 82

               
               
               Conread position:5-304
               
               
               Cow position:chr4:45367656-45367960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:5-308
               
               
               Cow position:chr4:65265391-65265094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):42, 73

               
               
               Conread position:5-311
               
               
               Cow position:chr4:13974049-13973748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):45, 23

               
               
               Conread position:5-311
               
               
               Cow position:chr4:37704186-37704494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 33

               
               
               Conread position:5-311
               
               
               Cow position:chr4:45013244-45012955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):54, 33

               
               
               Conread position:5-311
               
               
               Cow position:chr4:54191008-54191300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):54, 194

               
               
               Conread position:5-312
               
               
               Cow position:chr4:19098385-19098706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):54, 200

               
               
               Conread position:5-312
               
               
               Cow position:chr4:41301070-41300766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):104, 84

               
               
               Conread position:5-315
               
               
               Cow position:chr4:21874730-21875037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 37

               
               
               Conread position:5-318
               
               
               Cow position:chr4:43865936-43865626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:6-197
               
               
               Cow position:chr4:19408079-19407879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):44, 138

               
               
               Conread position:6-197
               
               
               Cow position:chr4:59002213-59002021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):96, 32

               
               
               Conread position:6-198
               
               
               Cow position:chr4:12676726-12676917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):43, 105

               
               
               Conread position:6-207
               
               
               Cow position:chr4:7847358-7847151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 54

               
               
               Conread position:6-220
               
               
               Cow position:chr4:44612923-44613143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):16, 173

               
               
               Conread position:6-293
               
               
               Cow position:chr4:58881042-58880747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):48, 178

               
               
               Conread position:6-311
               
               
               Cow position:chr4:8413197-8412894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):87, 32

               
               
               Conread position:7-172
               
               
               Cow position:chr4:19313933-19314107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:7-201
               
               
               Cow position:chr4:19316080-19315884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):72, 105

               
               
               Conread position:7-201
               
               
               Cow position:chr4:47510312-47510507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):51, 107

               
               
               Conread position:7-201
               
               
               Cow position:chr4:52823487-52823279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):86, 36

               
               
               Conread position:7-201
               
               
               Cow position:chr4:62472002-62472202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):33, 58

               
               
               Conread position:7-217
               
               
               Cow position:chr4:66547847-66547629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):41, 181

               
               
               Conread position:7-239
               
               
               Cow position:chr4:60719021-60719263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 214

               
               
               Conread position:7-292
               
               
               Cow position:chr4:11380206-11380504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):52, 43

               
               
               Conread position:8-202
               
               
               Cow position:chr4:34562302-34562505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:8-231
               
               
               Cow position:chr4:11194106-11194339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 59

               
               
               Conread position:9-189
               
               
               Cow position:chr4:29805448-29805263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):16, 84

               
               
               Conread position:9-213
               
               
               Cow position:chr4:20142984-20142777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):37, 119

               
               
               Conread position:10-189
               
               
               Cow position:chr4:64040045-64040225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):17, 34

               
               
               Conread position:12-189
               
               
               Cow position:chr4:65175218-65175034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:12-307
               
               
               Cow position:chr4:30791897-30792202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):14, 69

               
               
               Conread position:13-196
               
               
               Cow position:chr4:12591287-12591096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):17, 31

               
               
               Conread position:13-207
               
               
               Cow position:chr4:20147109-20147310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):12, 176

               
               
               Conread position:13-219
               
               
               Cow position:chr4:44782301-44782515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:171
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:13-301
               
               
               Cow position:chr4:69406277-69406560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):10, 52

               
               
               Conread position:13-307
               
               
               Cow position:chr4:19323898-19324214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:14-223
               
               
               Cow position:chr4:1798-2016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:14-223
               
               
               Cow position:chr4:17218201-17217987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):32, 80

               
               
               Conread position:14-310
               
               
               Cow position:chr4:10056140-10056442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):33, 105

               
               
               Conread position:15-176
               
               
               Cow position:chr4:48143764-48143936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:15-201
               
               
               Cow position:chr4:13327025-13326831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):7, 85

               
               
               Conread position:15-204
               
               
               Cow position:chr4:9925698-9925503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):48, 38

               
               
               Conread position:15-207
               
               
               Cow position:chr4:19199363-19199158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:15-213
               
               
               Cow position:chr4:48902695-48902490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:15-304
               
               
               Cow position:chr4:13145847-13146142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):38, 176

               
               
               Conread position:17-207
               
               
               Cow position:chr4:25197566-25197365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:17-214
               
               
               Cow position:chr4:7704395-7704188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:19-198
               
               
               Cow position:chr4:8704928-8705115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:19-207
               
               
               Cow position:chr4:45837699-45837499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:19-214
               
               
               Cow position:chr4:45583184-45582987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):27, 8

               
               
               Conread position:19-319
               
               
               Cow position:chr4:26830636-26830923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):44, 127

               
               
               Conread position:20-183
               
               
               Cow position:chr4:36731131-36731295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):73, 36

               
               
               Conread position:20-185
               
               
               Cow position:chr4:46477018-46476839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-188
               
               
               Cow position:chr4:10905530-10905360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):26, 126

               
               
               Conread position:20-189
               
               
               Cow position:chr4:16513585-16513413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):66, 24

               
               
               Conread position:20-195
               
               
               Cow position:chr4:22101325-22101148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):66, 25

               
               
               Conread position:20-196
               
               
               Cow position:chr4:39128469-39128655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):28, 84

               
               
               Conread position:20-196
               
               
               Cow position:chr4:54921153-54920972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):43, 89

               
               
               Conread position:20-198
               
               
               Cow position:chr4:19430295-19430485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-198
               
               
               Cow position:chr4:46136686-46136869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):23, 153

               
               
               Conread position:20-201
               
               
               Cow position:chr4:22713555-22713371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):73, 115

               
               
               Conread position:20-201
               
               
               Cow position:chr4:38822383-38822196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):38, 140

               
               
               Conread position:20-201
               
               
               Cow position:chr4:45685400-45685580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):65, 23

               
               
               Conread position:20-201
               
               
               Cow position:chr4:46591600-46591789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):29, 169

               
               
               Conread position:20-201
               
               
               Cow position:chr4:47038701-47038890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-204
               
               
               Cow position:chr4:8770041-8770222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:20-204
               
               
               Cow position:chr4:43740473-43740659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):32, 15

               
               
               Conread position:20-205
               
               
               Cow position:chr4:31004472-31004282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:20-206
               
               
               Cow position:chr4:37732548-37732355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr4:203207-203016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:20-207
               
               
               Cow position:chr4:3388482-3388672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):68, 126

               
               
               Conread position:20-207
               
               
               Cow position:chr4:22138294-22138092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr4:38946143-38946344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr4:38999362-38999550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):67, 24

               
               
               Conread position:20-207
               
               
               Cow position:chr4:46456125-46455940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:151
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):73, 30

               
               
               Conread position:20-207
               
               
               Cow position:chr4:66380408-66380211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):28, 171

               
               
               Conread position:20-208
               
               
               Cow position:chr4:22073380-22073195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 17

               
               
               Conread position:20-208
               
               
               Cow position:chr4:22546903-22546711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:20-209
               
               
               Cow position:chr4:23445114-23444913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):29, 139

               
               
               Conread position:20-209
               
               
               Cow position:chr4:43894876-43894686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):32, 110

               
               
               Conread position:20-209
               
               
               Cow position:chr4:45775404-45775207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:20-209
               
               
               Cow position:chr4:62370251-62370442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):39, 152

               
               
               Conread position:20-212
               
               
               Cow position:chr4:49800628-49800822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):20, 96

               
               
               Conread position:20-213
               
               
               Cow position:chr4:32726161-32726358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):32, 174

               
               
               Conread position:20-223
               
               
               Cow position:chr4:19322145-19321929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):36, 144

               
               
               Conread position:20-226
               
               
               Cow position:chr4:45636101-45636312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):43, 23

               
               
               Conread position:20-304
               
               
               Cow position:chr4:21173783-21174076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):67, 228

               
               
               Conread position:20-311
               
               
               Cow position:chr4:47348762-47349060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):29, 88

               
               
               Conread position:21-186
               
               
               Cow position:chr4:19573222-19573393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 9

               
               
               Conread position:21-188
               
               
               Cow position:chr4:69411977-69411805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):32, 65

               
               
               Conread position:21-197
               
               
               Cow position:chr4:56590977-56591156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):21, 44

               
               
               Conread position:21-198
               
               
               Cow position:chr4:35638963-35638784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):7, 30

               
               
               Conread position:21-233
               
               
               Cow position:chr4:62771985-62771773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):42, 153

               
               
               Conread position:22-175
               
               
               Cow position:chr4:29291456-29291611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:22-184
               
               
               Cow position:chr4:12473785-12473952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):24, 112

               
               
               Conread position:22-184
               
               
               Cow position:chr4:13284319-13284485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):24, 111

               
               
               Conread position:22-198
               
               
               Cow position:chr4:54541704-54541517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:23-196
               
               
               Cow position:chr4:58248339-58248519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):23, 94

               
               
               Conread position:23-198
               
               
               Cow position:chr4:17851315-17851133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):18, 47

               
               
               Conread position:24-192
               
               
               Cow position:chr4:961716-961537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:24-207
               
               
               Cow position:chr4:44773105-44772914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:25-183
               
               
               Cow position:chr4:33910221-33910374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):75, 13

               
               
               Conread position:25-207
               
               
               Cow position:chr4:9444747-9444557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:26-215
               
               
               Cow position:chr4:48173078-48173274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):37, 17

               
               
               Conread position:28-201
               
               
               Cow position:chr4:14500300-14500121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:30-172
               
               
               Cow position:chr4:41292007-41291860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):16, 86

               
               
               Conread position:30-205
               
               
               Cow position:chr4:6653669-6653847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 86

               
               
               Conread position:30-212
               
               
               Cow position:chr4:45874517-45874333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):49, 16

               
               
               Conread position:34-188
               
               
               Cow position:chr4:60141564-60141412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:35-200
               
               
               Cow position:chr4:3268408-3268242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 11

               
               
               Conread position:35-201
               
               
               Cow position:chr4:45862372-45862535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):56, 15

               
               
               Conread position:35-211
               
               
               Cow position:chr4:38358866-38358691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):76, 11

               
               
               Conread position:36-196
               
               
               Cow position:chr4:37343081-37343240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):57, 107

               
               
               Conread position:36-197
               
               
               Cow position:chr4:40414675-40414509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:37-201
               
               
               Cow position:chr4:46435279-46435447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 23

               
               
               Conread position:37-207
               
               
               Cow position:chr4:5790604-5790771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 22

               
               
               Conread position:37-212
               
               
               Cow position:chr4:51920494-51920678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:38-184
               
               
               Cow position:chr4:61926737-61926586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 105

               
               
               Conread position:39-188
               
               
               Cow position:chr4:67393047-67393201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:39-300
               
               
               Cow position:chr4:63096116-63095842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):54, 23

               
               
               Conread position:40-201
               
               
               Cow position:chr4:42232064-42231901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:40-210
               
               
               Cow position:chr4:36517520-36517352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):66, 22

               
               
               Conread position:40-309
               
               
               Cow position:chr4:15462296-15462031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):7, 158

               
               
               Conread position:41-198
               
               
               Cow position:chr4:12127681-12127519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):12, 155

               
               
               Conread position:41-207
               
               
               Cow position:chr4:33181504-33181673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:43-304
               
               
               Cow position:chr4:46033492-46033748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):16, 37

               
               
               Conread position:44-186
               
               
               Cow position:chr4:31177785-31177932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:44-201
               
               
               Cow position:chr4:44854327-44854168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:44-304
               
               
               Cow position:chr4:10472152-10472406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:45-207
               
               
               Cow position:chr4:26960006-26959841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):39, 138

               
               
               Conread position:46-197
               
               
               Cow position:chr4:7698230-7698384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):44, 81

               
               
               Conread position:46-201
               
               
               Cow position:chr4:12135962-12135804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):30, 18

               
               
               Conread position:46-201
               
               
               Cow position:chr4:19256655-19256816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):16, 112

               
               
               Conread position:46-208
               
               
               Cow position:chr4:17052629-17052465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):47, 157

               
               
               Conread position:46-209
               
               
               Cow position:chr4:32561794-32561957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:46-228
               
               
               Cow position:chr4:33091337-33091522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 167

               
               
               Conread position:47-195
               
               
               Cow position:chr4:48321998-48322151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):46, 136

               
               
               Conread position:50-188
               
               
               Cow position:chr4:1646128-1645983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):12, 122

               
               
               Conread position:50-209
               
               
               Cow position:chr4:13668654-13668493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):26, 145

               
               
               Conread position:50-308
               
               
               Cow position:chr4:8947365-8947617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:51-298
               
               
               Cow position:chr4:48381350-48381575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):42, 100

               
               
               Conread position:51-300
               
               
               Cow position:chr4:11496677-11496438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):42, 54

               
               
               Conread position:53-307
               
               
               Cow position:chr4:61345989-61346231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):9, 106

               
               
               Conread position:56-204
               
               
               Cow position:chr4:61608991-61608839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:57-197
               
               
               Cow position:chr4:46560155-46560301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):30, 85

               
               
               Conread position:57-198
               
               
               Cow position:chr4:43542496-43542358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):36, 86

               
               
               Conread position:57-201
               
               
               Cow position:chr4:19456712-19456566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):36, 127

               
               
               Conread position:57-201
               
               
               Cow position:chr4:50687886-50687743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):29, 86

               
               
               Conread position:57-204
               
               
               Cow position:chr4:20124993-20124840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-206
               
               
               Cow position:chr4:19539262-19539109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-207
               
               
               Cow position:chr4:45213215-45213059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):36, 115

               
               
               Conread position:57-223
               
               
               Cow position:chr4:46702683-46702517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 124

               
               
               Conread position:57-237
               
               
               Cow position:chr4:50676195-50676013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):20, 55

               
               
               Conread position:57-312
               
               
               Cow position:chr4:45910002-45909761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):36, 117

               
               
               Conread position:58-194
               
               
               Cow position:chr4:61268168-61268306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):35, 8

               
               
               Conread position:58-196
               
               
               Cow position:chr4:13918957-13919095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):33, 47

               
               
               Conread position:59-179
               
               
               Cow position:chr4:45669796-45669673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:59-207
               
               
               Cow position:chr4:40995708-40995859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:59-207
               
               
               Cow position:chr4:47262510-47262662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):5, 124

               
               
               Conread position:61-189
               
               
               Cow position:chr4:15236615-15236743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):29, 44

               
               
               Conread position:61-215
               
               
               Cow position:chr4:27699011-27699167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):22, 152

               
               
               Conread position:61-311
               
               
               Cow position:chr4:19542117-19542348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:62-189
               
               
               Cow position:chr4:44786022-44786153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:62-198
               
               
               Cow position:chr4:60527160-60527300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:62-198
               
               
               Cow position:chr4:68590757-68590891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:62-306
               
               
               Cow position:chr4:19304324-19304565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):24, 123

               
               
               Conread position:63-198
               
               
               Cow position:chr4:34983515-34983379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:64-207
               
               
               Cow position:chr4:6094084-6093939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):22, 80

               
               
               Conread position:64-304
               
               
               Cow position:chr4:54854823-54854572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:66-209
               
               
               Cow position:chr4:53819702-53819553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:67-215
               
               
               Cow position:chr4:19496479-19496631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:69-189
               
               
               Cow position:chr4:8083812-8083687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:72-198
               
               
               Cow position:chr4:45262058-45261926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:72-204
               
               
               Cow position:chr4:17790302-17790166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:73-198
               
               
               Cow position:chr4:1236880-1236754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 99

               
               
               Conread position:73-200
               
               
               Cow position:chr4:60955322-60955450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):36, 18

               
               
               Conread position:74-205
               
               
               Cow position:chr4:12561035-12561169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:76-209
               
               
               Cow position:chr4:56852848-56852978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:78-195
               
               
               Cow position:chr4:34722889-34722771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:79-189
               
               
               Cow position:chr4:22849493-22849381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):9, 43

               
               
               Conread position:79-204
               
               
               Cow position:chr4:30769034-30769160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):8, 57

               
               
               Conread position:79-207
               
               
               Cow position:chr4:43909766-43909890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:79-208
               
               
               Cow position:chr4:38949538-38949405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-311
               
               
               Cow position:chr4:21533096-21532861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):31, 96

               
               
               Conread position:79-311
               
               
               Cow position:chr4:53169596-53169375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):8, 123

               
               
               Conread position:81-204
               
               
               Cow position:chr4:348424-348299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:81-209
               
               
               Cow position:chr4:46656130-46656259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):6, 101

               
               
               Conread position:82-198
               
               
               Cow position:chr4:41780237-41780121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):5, 72

               
               
               Conread position:82-204
               
               
               Cow position:chr4:12867105-12867228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:82-209
               
               
               Cow position:chr4:47230996-47230869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):5, 112

               
               
               Conread position:82-209
               
               
               Cow position:chr4:47284011-47283884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):5, 112

               
               
               Conread position:82-209
               
               
               Cow position:chr4:51708067-51708196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:82-213
               
               
               Cow position:chr4:23807951-23808084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:82-311
               
               
               Cow position:chr4:69398859-69398634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):90, 26

               
               
               Conread position:84-209
               
               
               Cow position:chr4:45483803-45483929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):26, 91

               
               
               Conread position:86-201
               
               
               Cow position:chr4:30691011-30691127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:86-209
               
               
               Cow position:chr4:54543657-54543532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:86-212
               
               
               Cow position:chr4:30845378-30845505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:86-213
               
               
               Cow position:chr4:5047139-5047010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:86-215
               
               
               Cow position:chr4:19561795-19561927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-301
               
               
               Cow position:chr4:27691235-27691435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):25, 65

               
               
               Conread position:87-220
               
               
               Cow position:chr4:65805903-65806037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:87-249
               
               
               Cow position:chr4:46761615-46761776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):24, 104

               
               
               Conread position:87-309
               
               
               Cow position:chr4:46275435-46275650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):22, 33

               
               
               Conread position:87-312
               
               
               Cow position:chr4:14760979-14761203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):23, 92

               
               
               Conread position:88-188
               
               
               Cow position:chr4:54937090-54937191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:88
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:88-303
               
               
               Cow position:chr4:65730763-65730542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:88-304
               
               
               Cow position:chr4:13520867-13520643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:88-309
               
               
               Cow position:chr4:53380695-53380917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):5, 104

               
               
               Conread position:89-201
               
               
               Cow position:chr4:22482332-22482448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:89-311
               
               
               Cow position:chr4:11512699-11512487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 92

               
               
               Conread position:89-317
               
               
               Cow position:chr4:46708361-46708143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):21, 90

               
               
               Conread position:92-200
               
               
               Cow position:chr4:45840411-45840520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:92-201
               
               
               Cow position:chr4:54975512-54975623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:92-215
               
               
               Cow position:chr4:25802703-25802825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):18, 100

               
               
               Conread position:92-223
               
               
               Cow position:chr4:26469665-26469797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:92-313
               
               
               Cow position:chr4:7729424-7729191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:93-207
               
               
               Cow position:chr4:22051102-22050987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:93-207
               
               
               Cow position:chr4:46447168-46447054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 100

               
               
               Conread position:95-209
               
               
               Cow position:chr4:51630798-51630912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):11, 34

               
               
               Conread position:100-201
               
               
               Cow position:chr4:43579392-43579290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:104-294
               
               
               Cow position:chr4:51477572-51477393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:109-207
               
               
               Cow position:chr4:23271313-23271411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:110-317
               
               
               Cow position:chr4:16645101-16644884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:118-308
               
               
               Cow position:chr4:57421090-57421272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:121-309
               
               
               Cow position:chr4:26684404-26684578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:127-308
               
               
               Cow position:chr4:59337327-59337503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:130-318
               
               
               Cow position:chr4:37845367-37845183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):58, 40

               
               
               Conread position:186-313
               
               
               Cow position:chr4:12052266-12052137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):50, 15

               
               
               Conread position:204-304
               
               
               Cow position:chr4:21065116-21065216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-184
               
               
               Cow position:chr5:26262727-26262541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):46, 97

               
               
               Conread position:1-189
               
               
               Cow position:chr5:69731448-69731644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):25, 88

               
               
               Conread position:1-190
               
               
               Cow position:chr5:20422239-20422049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):52, 63

               
               
               Conread position:1-195
               
               
               Cow position:chr5:47696501-47696300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):14, 104

               
               
               Conread position:1-196
               
               
               Cow position:chr5:30253688-30253892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:1-197
               
               
               Cow position:chr5:64758824-64758615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-199
               
               
               Cow position:chr5:50575732-50575937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):17, 44

               
               
               Conread position:1-201
               
               
               Cow position:chr5:45397519-45397725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:1-203
               
               
               Cow position:chr5:18898925-18899131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):45, 120

               
               
               Conread position:1-204
               
               
               Cow position:chr5:4280389-4280607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:1-204
               
               
               Cow position:chr5:41165027-41165245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):17, 207

               
               
               Conread position:1-206
               
               
               Cow position:chr5:36650499-36650714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr5:5855804-5856020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):20, 40

               
               
               Conread position:1-207
               
               
               Cow position:chr5:26094221-26094004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:1-207
               
               
               Cow position:chr5:35247169-35246948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr5:54750778-54750968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):22, 35

               
               
               Conread position:1-210
               
               
               Cow position:chr5:61492046-61492259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):83, 56

               
               
               Conread position:1-214
               
               
               Cow position:chr5:35969482-35969701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):22, 65

               
               
               Conread position:1-214
               
               
               Cow position:chr5:67932517-67932305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):44, 18

               
               
               Conread position:1-215
               
               
               Cow position:chr5:44994097-44993877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):24, 101

               
               
               Conread position:1-216
               
               
               Cow position:chr5:54086492-54086712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:170
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):41, 58

               
               
               Conread position:1-218
               
               
               Cow position:chr5:9090073-9089855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 155

               
               
               Conread position:1-219
               
               
               Cow position:chr5:4710198-4709978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):78, 63

               
               
               Conread position:1-220
               
               
               Cow position:chr5:37808722-37808489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):20, 212

               
               
               Conread position:1-221
               
               
               Cow position:chr5:26477071-26476842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):51, 16

               
               
               Conread position:1-221
               
               
               Cow position:chr5:60715417-60715195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):18, 33

               
               
               Conread position:1-229
               
               
               Cow position:chr5:30276644-30276873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):21, 38

               
               
               Conread position:1-300
               
               
               Cow position:chr5:49440925-49440630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 169

               
               
               Conread position:1-301
               
               
               Cow position:chr5:46322849-46322562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):41, 106

               
               
               Conread position:1-309
               
               
               Cow position:chr5:55019236-55019554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:234
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):18, 47

               
               
               Conread position:1-312
               
               
               Cow position:chr5:37377813-37378139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):113, 25

               
               
               Conread position:1-409
               
               
               Cow position:chr5:50637775-50638184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):57, 93

               
               
               Conread position:2-186
               
               
               Cow position:chr5:45404991-45405185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:2-192
               
               
               Cow position:chr5:56153564-56153762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):55, 41

               
               
               Conread position:3-174
               
               
               Cow position:chr5:453510-453686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):56, 35

               
               
               Conread position:3-188
               
               
               Cow position:chr5:34528498-34528689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):16, 114

               
               
               Conread position:3-189
               
               
               Cow position:chr5:15363831-15364026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:3-198
               
               
               Cow position:chr5:50943200-50943003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 39

               
               
               Conread position:3-201
               
               
               Cow position:chr5:20779449-20779241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:3-207
               
               
               Cow position:chr5:26097246-26097450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):50, 76

               
               
               Conread position:3-218
               
               
               Cow position:chr5:44752368-44752134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:3-223
               
               
               Cow position:chr5:55061876-55062104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 188

               
               
               Conread position:3-238
               
               
               Cow position:chr5:69337772-69338011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):19, 64

               
               
               Conread position:3-304
               
               
               Cow position:chr5:58555091-58555379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:226
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):25, 48

               
               
               Conread position:3-309
               
               
               Cow position:chr5:13537094-13537389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):74, 54

               
               
               Conread position:3-319
               
               
               Cow position:chr5:4166595-4166905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):46, 61

               
               
               Conread position:4-209
               
               
               Cow position:chr5:11769221-11769432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):44, 193

               
               
               Conread position:4-223
               
               
               Cow position:chr5:55796017-55795789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:177
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):21, 35

               
               
               Conread position:4-318
               
               
               Cow position:chr5:29860299-29860613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):46, 89

               
               
               Conread position:5-164
               
               
               Cow position:chr5:32696870-32696704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):43, 135

               
               
               Conread position:5-169
               
               
               Cow position:chr5:24349061-24349231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):58, 45

               
               
               Conread position:5-175
               
               
               Cow position:chr5:19813270-19813090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 22

               
               
               Conread position:5-176
               
               
               Cow position:chr5:44848067-44847890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):88, 52

               
               
               Conread position:5-179
               
               
               Cow position:chr5:62142627-62142810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr5:22643272-22643093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):29, 90

               
               
               Conread position:5-184
               
               
               Cow position:chr5:37757873-37757700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):106, 41

               
               
               Conread position:5-184
               
               
               Cow position:chr5:56680202-56680395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:5-185
               
               
               Cow position:chr5:64140486-64140678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-187
               
               
               Cow position:chr5:28035694-28035884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):44, 169

               
               
               Conread position:5-187
               
               
               Cow position:chr5:63831880-63832070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-188
               
               
               Cow position:chr5:15479077-15479268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):43, 158

               
               
               Conread position:5-188
               
               
               Cow position:chr5:75436934-75436746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):52, 135

               
               
               Conread position:5-189
               
               
               Cow position:chr5:4220937-4221121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):66, 45

               
               
               Conread position:5-189
               
               
               Cow position:chr5:29515543-29515362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):54, 91

               
               
               Conread position:5-189
               
               
               Cow position:chr5:38076534-38076339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr5:47323418-47323606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:152
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr5:54375554-54375358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-195
               
               
               Cow position:chr5:11668232-11668035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):16, 39

               
               
               Conread position:5-195
               
               
               Cow position:chr5:44446915-44446715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:5-196
               
               
               Cow position:chr5:35126006-35126206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):46, 32

               
               
               Conread position:5-196
               
               
               Cow position:chr5:64137207-64137407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-196
               
               
               Cow position:chr5:64523914-64523711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 22

               
               
               Conread position:5-197
               
               
               Cow position:chr5:74858525-74858727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr5:21828819-21829020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:5-198
               
               
               Cow position:chr5:36855158-36855359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr5:51053697-51053495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):47, 60

               
               
               Conread position:5-198
               
               
               Cow position:chr5:59627021-59626819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):44, 167

               
               
               Conread position:5-198
               
               
               Cow position:chr5:62378744-62378933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):88, 40

               
               
               Conread position:5-198
               
               
               Cow position:chr5:73168048-73167859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):84, 38

               
               
               Conread position:5-200
               
               
               Cow position:chr5:15470885-15471084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:5-200
               
               
               Cow position:chr5:26990345-26990543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):36, 81

               
               
               Conread position:5-201
               
               
               Cow position:chr5:14550628-14550428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:5-201
               
               
               Cow position:chr5:44796778-44796577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):40, 21

               
               
               Conread position:5-201
               
               
               Cow position:chr5:53710737-53710533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):46, 32

               
               
               Conread position:5-201
               
               
               Cow position:chr5:55955860-55956068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):58, 115

               
               
               Conread position:5-201
               
               
               Cow position:chr5:57419838-57419638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):58, 12

               
               
               Conread position:5-201
               
               
               Cow position:chr5:57526965-57526773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):83, 38

               
               
               Conread position:5-201
               
               
               Cow position:chr5:67212309-67212518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 174

               
               
               Conread position:5-201
               
               
               Cow position:chr5:72903276-72903080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 32

               
               
               Conread position:5-204
               
               
               Cow position:chr5:18289083-18289281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):44, 86

               
               
               Conread position:5-204
               
               
               Cow position:chr5:20843447-20843235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr5:6503930-6503719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr5:11229716-11229514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):37, 58

               
               
               Conread position:5-207
               
               
               Cow position:chr5:11427282-11427073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):33, 156

               
               
               Conread position:5-207
               
               
               Cow position:chr5:16206202-16205993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr5:17999539-17999334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):46, 37

               
               
               Conread position:5-207
               
               
               Cow position:chr5:20128007-20128214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr5:57994914-57994717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):47, 89

               
               
               Conread position:5-208
               
               
               Cow position:chr5:64027055-64026856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):89, 33

               
               
               Conread position:5-209
               
               
               Cow position:chr5:12901870-12902079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):54, 192

               
               
               Conread position:5-209
               
               
               Cow position:chr5:35208216-35208423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):9, 92

               
               
               Conread position:5-209
               
               
               Cow position:chr5:57756078-57755873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):41, 87

               
               
               Conread position:5-209
               
               
               Cow position:chr5:63234873-63234668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):45, 92

               
               
               Conread position:5-209
               
               
               Cow position:chr5:66972381-66972593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:5-214
               
               
               Cow position:chr5:65776429-65776215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:5-215
               
               
               Cow position:chr5:19335831-19335611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:5-215
               
               
               Cow position:chr5:29828002-29828214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):73, 155

               
               
               Conread position:5-217
               
               
               Cow position:chr5:57156361-57156144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):41, 168

               
               
               Conread position:5-219
               
               
               Cow position:chr5:6444198-6443983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):41, 59

               
               
               Conread position:5-223
               
               
               Cow position:chr5:54060230-54060454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):46, 21

               
               
               Conread position:5-237
               
               
               Cow position:chr5:63427054-63426812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:5-239
               
               
               Cow position:chr5:1087244-1087012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 59

               
               
               Conread position:5-267
               
               
               Cow position:chr5:57737057-57737310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:5-292
               
               
               Cow position:chr5:41545941-41545653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):44, 28

               
               
               Conread position:5-299
               
               
               Cow position:chr5:49685317-49685035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):47, 143

               
               
               Conread position:5-301
               
               
               Cow position:chr5:51935145-51935443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:5-304
               
               
               Cow position:chr5:44726373-44726088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):38, 48

               
               
               Conread position:5-306
               
               
               Cow position:chr5:59325882-59325592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:224
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):94, 38

               
               
               Conread position:5-308
               
               
               Cow position:chr5:24136666-24136964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):48, 93

               
               
               Conread position:5-308
               
               
               Cow position:chr5:41294034-41294328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:5-310
               
               
               Cow position:chr5:59873138-59872804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-311
               
               
               Cow position:chr5:458444-458756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 127

               
               
               Conread position:6-176
               
               
               Cow position:chr5:63627573-63627404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 91

               
               
               Conread position:6-184
               
               
               Cow position:chr5:7723618-7723804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:6-207
               
               
               Cow position:chr5:53055617-53055399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:6-207
               
               
               Cow position:chr5:61784774-61784565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:6-304
               
               
               Cow position:chr5:40559589-40559903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):16, 53

               
               
               Conread position:7-195
               
               
               Cow position:chr5:6683400-6683218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):103, 34

               
               
               Conread position:7-201
               
               
               Cow position:chr5:55176845-55177039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):39, 79

               
               
               Conread position:7-207
               
               
               Cow position:chr5:52001666-52001461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):52, 31

               
               
               Conread position:7-220
               
               
               Cow position:chr5:56317252-56317464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):79, 103

               
               
               Conread position:7-297
               
               
               Cow position:chr5:54767954-54767664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):45, 72

               
               
               Conread position:7-301
               
               
               Cow position:chr5:23678747-23678458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):45, 111

               
               
               Conread position:7-309
               
               
               Cow position:chr5:59115342-59115624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):36, 60

               
               
               Conread position:8-209
               
               
               Cow position:chr5:44028349-44028145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):40, 30

               
               
               Conread position:12-184
               
               
               Cow position:chr5:41713255-41713438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 153

               
               
               Conread position:12-198
               
               
               Cow position:chr5:71494777-71494974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:12-304
               
               
               Cow position:chr5:50821740-50822028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):12, 208

               
               
               Conread position:13-153
               
               
               Cow position:chr5:11965372-11965222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:13-198
               
               
               Cow position:chr5:39258473-39258655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):80, 30

               
               
               Conread position:13-200
               
               
               Cow position:chr5:30805125-30805321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:13-201
               
               
               Cow position:chr5:65941293-65941095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 165

               
               
               Conread position:13-207
               
               
               Cow position:chr5:54875740-54875533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):8, 171

               
               
               Conread position:13-227
               
               
               Cow position:chr5:21040016-21039806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):15, 99

               
               
               Conread position:13-311
               
               
               Cow position:chr5:43992283-43992584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 185

               
               
               Conread position:15-190
               
               
               Cow position:chr5:16214647-16214832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:15-207
               
               
               Cow position:chr5:55756462-55756253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:16-196
               
               
               Cow position:chr5:2309593-2309407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):47, 159

               
               
               Conread position:17-172
               
               
               Cow position:chr5:60188953-60189120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:17-178
               
               
               Cow position:chr5:48867496-48867331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):46, 13

               
               
               Conread position:17-184
               
               
               Cow position:chr5:2851553-2851729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 26

               
               
               Conread position:17-195
               
               
               Cow position:chr5:7012883-7012701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):46, 148

               
               
               Conread position:17-201
               
               
               Cow position:chr5:26549177-26548985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):33, 170

               
               
               Conread position:17-201
               
               
               Cow position:chr5:49919888-49920080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:17-206
               
               
               Cow position:chr5:70678675-70678486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):31, 21

               
               
               Conread position:17-207
               
               
               Cow position:chr5:20995130-20994924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:17-209
               
               
               Cow position:chr5:61914535-61914729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):69, 21

               
               
               Conread position:18-201
               
               
               Cow position:chr5:61007031-61007219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 168

               
               
               Conread position:19-194
               
               
               Cow position:chr5:27306271-27306454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:19-201
               
               
               Cow position:chr5:53946863-53947053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:19-204
               
               
               Cow position:chr5:50101411-50101215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:19-296
               
               
               Cow position:chr5:58446773-58447046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):27, 169

               
               
               Conread position:20-176
               
               
               Cow position:chr5:40237181-40237342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:20-184
               
               
               Cow position:chr5:23529312-23529144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):33, 90

               
               
               Conread position:20-185
               
               
               Cow position:chr5:47317003-47316834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:20-187
               
               
               Cow position:chr5:14904104-14903926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):13, 44

               
               
               Conread position:20-187
               
               
               Cow position:chr5:60747310-60747138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):18, 90

               
               
               Conread position:20-189
               
               
               Cow position:chr5:49501857-49501680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:20-189
               
               
               Cow position:chr5:54350395-54350217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:20-195
               
               
               Cow position:chr5:49474580-49474394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:20-196
               
               
               Cow position:chr5:4032024-4031835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-196
               
               
               Cow position:chr5:33560765-33560583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:20-201
               
               
               Cow position:chr5:1247231-1247419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):30, 98

               
               
               Conread position:20-201
               
               
               Cow position:chr5:3588994-3589183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):31, 61

               
               
               Conread position:20-201
               
               
               Cow position:chr5:19752272-19752458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):31, 79

               
               
               Conread position:20-201
               
               
               Cow position:chr5:42064171-42064361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-201
               
               
               Cow position:chr5:57768013-57767831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):29, 152

               
               
               Conread position:20-202
               
               
               Cow position:chr5:41884905-41885073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):85, 42

               
               
               Conread position:20-202
               
               
               Cow position:chr5:57101558-57101367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):26, 157

               
               
               Conread position:20-204
               
               
               Cow position:chr5:3771816-3772005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):28, 64

               
               
               Conread position:20-209
               
               
               Cow position:chr5:53855666-53855870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-213
               
               
               Cow position:chr5:32394568-32394767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):35, 17

               
               
               Conread position:20-214
               
               
               Cow position:chr5:7057432-7057236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 23

               
               
               Conread position:20-214
               
               
               Cow position:chr5:18574141-18574343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 105

               
               
               Conread position:20-220
               
               
               Cow position:chr5:27188093-27188291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 75

               
               
               Conread position:20-223
               
               
               Cow position:chr5:41981338-41981544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):33, 92

               
               
               Conread position:20-239
               
               
               Cow position:chr5:12866850-12866634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 91

               
               
               Conread position:20-304
               
               
               Cow position:chr5:45420166-45419863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:20-307
               
               
               Cow position:chr5:45148395-45148114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):71, 92

               
               
               Conread position:20-308
               
               
               Cow position:chr5:54311303-54311586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 179

               
               
               Conread position:20-308
               
               
               Cow position:chr5:63987481-63987186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 171

               
               
               Conread position:20-311
               
               
               Cow position:chr5:34300884-34301178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):27, 79

               
               
               Conread position:20-312
               
               
               Cow position:chr5:58856072-58856382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):33, 105

               
               
               Conread position:21-175
               
               
               Cow position:chr5:45574399-45574235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:21-194
               
               
               Cow position:chr5:28224423-28224601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):31, 119

               
               
               Conread position:21-201
               
               
               Cow position:chr5:38739430-38739247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):45, 22

               
               
               Conread position:21-201
               
               
               Cow position:chr5:42845628-42845435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:21-202
               
               
               Cow position:chr5:9369298-9369112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):67, 22

               
               
               Conread position:21-204
               
               
               Cow position:chr5:35459327-35459133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):31, 17

               
               
               Conread position:21-209
               
               
               Cow position:chr5:55783978-55783801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):21, 37

               
               
               Conread position:22-184
               
               
               Cow position:chr5:35982771-35982598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:22-198
               
               
               Cow position:chr5:17602231-17602052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):18, 45

               
               
               Conread position:22-222
               
               
               Cow position:chr5:30949947-30949737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:23-215
               
               
               Cow position:chr5:52108296-52108098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):30, 132

               
               
               Conread position:25-207
               
               
               Cow position:chr5:57447675-57447504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:25-209
               
               
               Cow position:chr5:57230367-57230173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:25-301
               
               
               Cow position:chr5:61875515-61875777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):33, 48

               
               
               Conread position:26-214
               
               
               Cow position:chr5:2827347-2827539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):16, 172

               
               
               Conread position:29-201
               
               
               Cow position:chr5:50723025-50723202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:30-201
               
               
               Cow position:chr5:34347751-34347579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 67

               
               
               Conread position:32-204
               
               
               Cow position:chr5:25597816-25597992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:34-186
               
               
               Cow position:chr5:16939610-16939453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:34-204
               
               
               Cow position:chr5:16938040-16937871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 108

               
               
               Conread position:35-189
               
               
               Cow position:chr5:36838946-36839103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):52, 136

               
               
               Conread position:35-196
               
               
               Cow position:chr5:57150651-57150818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:35-198
               
               
               Cow position:chr5:59627086-59627253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:35-208
               
               
               Cow position:chr5:29353142-29352965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 133

               
               
               Conread position:35-213
               
               
               Cow position:chr5:39447548-39447365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):51, 29

               
               
               Conread position:36-200
               
               
               Cow position:chr5:56287519-56287347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:36-215
               
               
               Cow position:chr5:17566450-17566268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):52, 21

               
               
               Conread position:36-300
               
               
               Cow position:chr5:63656464-63656748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):57, 41

               
               
               Conread position:37-198
               
               
               Cow position:chr5:63059063-63059214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:37-311
               
               
               Cow position:chr5:27293896-27293615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:40-189
               
               
               Cow position:chr5:4226339-4226490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):49, 24

               
               
               Conread position:40-195
               
               
               Cow position:chr5:14473414-14473255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):12, 154

               
               
               Conread position:41-223
               
               
               Cow position:chr5:43929742-43929558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):61, 21

               
               
               Conread position:44-227
               
               
               Cow position:chr5:6033432-6033621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 181

               
               
               Conread position:44-234
               
               
               Cow position:chr5:55129338-55129532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:45-212
               
               
               Cow position:chr5:29771522-29771695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:46-178
               
               
               Cow position:chr5:6528680-6528818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:46-204
               
               
               Cow position:chr5:30561929-30562091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:46-207
               
               
               Cow position:chr5:2469209-2469050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:46-207
               
               
               Cow position:chr5:65679972-65679813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):33, 9

               
               
               Conread position:46-209
               
               
               Cow position:chr5:39937114-39937277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):56, 11

               
               
               Conread position:46-212
               
               
               Cow position:chr5:67634519-67634347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):52, 11

               
               
               Conread position:46-228
               
               
               Cow position:chr5:57489947-57489770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):47, 11

               
               
               Conread position:46-299
               
               
               Cow position:chr5:31640423-31640667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 16

               
               
               Conread position:47-307
               
               
               Cow position:chr5:51490248-51489987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):8, 188

               
               
               Conread position:47-311
               
               
               Cow position:chr5:56428313-56428058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):46, 66

               
               
               Conread position:48-204
               
               
               Cow position:chr5:11562724-11562564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 154

               
               
               Conread position:48-301
               
               
               Cow position:chr5:43844664-43844417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):43, 134

               
               
               Conread position:50-229
               
               
               Cow position:chr5:28230163-28230344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 156

               
               
               Conread position:51-201
               
               
               Cow position:chr5:56860449-56860597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):28, 69

               
               
               Conread position:51-204
               
               
               Cow position:chr5:45225811-45225657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 70

               
               
               Conread position:51-230
               
               
               Cow position:chr5:60908668-60908849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:53-223
               
               
               Cow position:chr5:56361799-56361971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):7, 60

               
               
               Conread position:54-189
               
               
               Cow position:chr5:65552707-65552573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 85

               
               
               Conread position:56-188
               
               
               Cow position:chr5:20211969-20212103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):31, 50

               
               
               Conread position:56-214
               
               
               Cow position:chr5:18062312-18062149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:57-188
               
               
               Cow position:chr5:5257280-5257145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:57-189
               
               
               Cow position:chr5:44163361-44163224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-198
               
               
               Cow position:chr5:56613556-56613410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-199
               
               
               Cow position:chr5:60948141-60948286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):31, 60

               
               
               Conread position:57-201
               
               
               Cow position:chr5:24946248-24946396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):31, 123

               
               
               Conread position:57-201
               
               
               Cow position:chr5:43858411-43858264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):28, 64

               
               
               Conread position:57-201
               
               
               Cow position:chr5:57062521-57062372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-204
               
               
               Cow position:chr5:5016437-5016584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):34, 48

               
               
               Conread position:57-204
               
               
               Cow position:chr5:53935539-53935391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 139

               
               
               Conread position:57-207
               
               
               Cow position:chr5:60515020-60514866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):36, 81

               
               
               Conread position:57-207
               
               
               Cow position:chr5:72045666-72045515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):20, 55

               
               
               Conread position:57-215
               
               
               Cow position:chr5:7713779-7713935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):131, 22

               
               
               Conread position:57-216
               
               
               Cow position:chr5:52723585-52723742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):37, 22

               
               
               Conread position:57-310
               
               
               Cow position:chr5:35513223-35513500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:57-311
               
               
               Cow position:chr5:26723456-26723703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 85

               
               
               Conread position:58-200
               
               
               Cow position:chr5:65050202-65050056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 57

               
               
               Conread position:58-201
               
               
               Cow position:chr5:44196920-44196772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:58-218
               
               
               Cow position:chr5:2240980-2240817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:58-312
               
               
               Cow position:chr5:44874202-44874456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):35, 103

               
               
               Conread position:60-290
               
               
               Cow position:chr5:40515273-40515033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):28, 49

               
               
               Conread position:61-204
               
               
               Cow position:chr5:52852983-52853130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:61-213
               
               
               Cow position:chr5:3743334-3743484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):25, 113

               
               
               Conread position:62-189
               
               
               Cow position:chr5:12299924-12300055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 119

               
               
               Conread position:62-196
               
               
               Cow position:chr5:55965881-55965743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:62-201
               
               
               Cow position:chr5:61049345-61049488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:62-207
               
               
               Cow position:chr5:36868750-36868897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 82

               
               
               Conread position:62-207
               
               
               Cow position:chr5:58519403-58519254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:62-230
               
               
               Cow position:chr5:12738542-12738375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):31, 43

               
               
               Conread position:62-301
               
               
               Cow position:chr5:35647356-35647599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):31, 122

               
               
               Conread position:64-196
               
               
               Cow position:chr5:7177166-7177302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:68-198
               
               
               Cow position:chr5:54436775-54436908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:69-304
               
               
               Cow position:chr5:55849905-55850126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):26, 94

               
               
               Conread position:70-185
               
               
               Cow position:chr5:38418541-38418656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 58

               
               
               Conread position:70-204
               
               
               Cow position:chr5:38040543-38040405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:71-311
               
               
               Cow position:chr5:38382777-38382543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):19, 106

               
               
               Conread position:72-209
               
               
               Cow position:chr5:40122584-40122448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 6

               
               
               Conread position:75-197
               
               
               Cow position:chr5:36822913-36823035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):16, 30

               
               
               Conread position:75-215
               
               
               Cow position:chr5:20882598-20882455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):11, 132

               
               
               Conread position:76-207
               
               
               Cow position:chr5:57399223-57399091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):11, 28

               
               
               Conread position:77-209
               
               
               Cow position:chr5:64843943-64843807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:78-207
               
               
               Cow position:chr5:26894688-26894557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:78-311
               
               
               Cow position:chr5:4956583-4956349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):15, 150

               
               
               Conread position:79-197
               
               
               Cow position:chr5:44734693-44734573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-201
               
               
               Cow position:chr5:51125977-51125856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):8, 108

               
               
               Conread position:79-207
               
               
               Cow position:chr5:53980722-53980592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:79-220
               
               
               Cow position:chr5:16185410-16185551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 114

               
               
               Conread position:79-298
               
               
               Cow position:chr5:36671634-36671854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):33, 125

               
               
               Conread position:80-300
               
               
               Cow position:chr5:4336328-4336547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):30, 13

               
               
               Conread position:80-303
               
               
               Cow position:chr5:46749792-46749561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):19, 7

               
               
               Conread position:81-207
               
               
               Cow position:chr5:49821462-49821591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):6, 99

               
               
               Conread position:81-289
               
               
               Cow position:chr5:30235912-30236116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):12, 24

               
               
               Conread position:83-316
               
               
               Cow position:chr5:54068005-54067763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:86-192
               
               
               Cow position:chr5:30638539-30638431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-196
               
               
               Cow position:chr5:20812586-20812697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 54

               
               
               Conread position:86-198
               
               
               Cow position:chr5:19079292-19079402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 61

               
               
               Conread position:86-201
               
               
               Cow position:chr5:51490562-51490446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-204
               
               
               Cow position:chr5:16668737-16668856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:86-204
               
               
               Cow position:chr5:51233979-51233860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-208
               
               
               Cow position:chr5:48062077-48061955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):24, 80

               
               
               Conread position:86-223
               
               
               Cow position:chr5:70353944-70353805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:86-309
               
               
               Cow position:chr5:42623139-42622909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:176
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:87-189
               
               
               Cow position:chr5:62011724-62011827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:87-308
               
               
               Cow position:chr5:57744883-57744680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):16, 106

               
               
               Conread position:88-188
               
               
               Cow position:chr5:17644586-17644485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:87
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:89-310
               
               
               Cow position:chr5:56485117-56485324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):21, 38

               
               
               Conread position:90-304
               
               
               Cow position:chr5:28324380-28324586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):76, 43

               
               
               Conread position:92-198
               
               
               Cow position:chr5:36251158-36251265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:92-307
               
               
               Cow position:chr5:18091050-18091250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 100

               
               
               Conread position:93-201
               
               
               Cow position:chr5:29979911-29979802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:95-311
               
               
               Cow position:chr5:44438696-44438479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):21, 98

               
               
               Conread position:99-309
               
               
               Cow position:chr5:50799801-50800006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):140, 87

               
               
               Conread position:104-211
               
               
               Cow position:chr5:54154143-54154037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:109-265
               
               
               Cow position:chr5:1090758-1090602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:110-301
               
               
               Cow position:chr5:66237901-66238085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:110-309
               
               
               Cow position:chr5:52063303-52063114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:121-309
               
               
               Cow position:chr5:68593986-68594166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:122-310
               
               
               Cow position:chr5:10255049-10255223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:127-303
               
               
               Cow position:chr5:29831461-29831292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:127-308
               
               
               Cow position:chr5:51018759-51018937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):91, 64

               
               
               Conread position:127-311
               
               
               Cow position:chr5:12391102-12390926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 17

               
               
               Conread position:128-310
               
               
               Cow position:chr5:5028812-5028987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:128-311
               
               
               Cow position:chr5:52268259-52268067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:168-304
               
               
               Cow position:chr5:40640087-40640227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:192-312
               
               
               Cow position:chr5:2851767-2851884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:213-318
               
               
               Cow position:chr5:19752437-19752541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:1-172
               
               
               Cow position:chr6:19292760-19292942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):49, 29

               
               
               Conread position:1-176
               
               
               Cow position:chr6:7119659-7119474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-177
               
               
               Cow position:chr6:17549020-17548828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-178
               
               
               Cow position:chr6:44867577-44867396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):64, 37

               
               
               Conread position:1-179
               
               
               Cow position:chr6:32268921-32268740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):20, 107

               
               
               Conread position:1-179
               
               
               Cow position:chr6:37462977-37463170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr6:58597549-58597350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):18, 71

               
               
               Conread position:1-187
               
               
               Cow position:chr6:28178985-28178799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):52, 18

               
               
               Conread position:1-189
               
               
               Cow position:chr6:6060606-6060413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):57, 47

               
               
               Conread position:1-189
               
               
               Cow position:chr6:21061926-21061729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):18, 120

               
               
               Conread position:1-189
               
               
               Cow position:chr6:35181297-35181099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:1-189
               
               
               Cow position:chr6:35842610-35842815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 181

               
               
               Conread position:1-192
               
               
               Cow position:chr6:32121866-32122071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-193
               
               
               Cow position:chr6:8788082-8787875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-196
               
               
               Cow position:chr6:12964814-12965019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:1-197
               
               
               Cow position:chr6:528319-528117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 44

               
               
               Conread position:1-198
               
               
               Cow position:chr6:15300863-15300668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):90, 110

               
               
               Conread position:1-198
               
               
               Cow position:chr6:35990272-35990067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:1-198
               
               
               Cow position:chr6:53841542-53841339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-201
               
               
               Cow position:chr6:24110242-24110451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):8, 38

               
               
               Conread position:1-201
               
               
               Cow position:chr6:47355779-47355992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 147

               
               
               Conread position:1-204
               
               
               Cow position:chr6:67281852-67282067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 77

               
               
               Conread position:1-206
               
               
               Cow position:chr6:21399795-21399581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr6:15305536-15305744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):23, 59

               
               
               Conread position:1-207
               
               
               Cow position:chr6:50984181-50984398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 41

               
               
               Conread position:1-207
               
               
               Cow position:chr6:59631961-59631746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:1-208
               
               
               Cow position:chr6:40032148-40032367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:172
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-208
               
               
               Cow position:chr6:44194587-44194373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 162

               
               
               Conread position:1-209
               
               
               Cow position:chr6:17997353-17997141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:1-210
               
               
               Cow position:chr6:9751090-9750876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):61, 29

               
               
               Conread position:1-210
               
               
               Cow position:chr6:22850289-22850078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):8, 47

               
               
               Conread position:1-239
               
               
               Cow position:chr6:38218626-38218875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):16, 43

               
               
               Conread position:1-240
               
               
               Cow position:chr6:7989454-7989206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):53, 30

               
               
               Conread position:1-244
               
               
               Cow position:chr6:26728563-26728321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):93, 42

               
               
               Conread position:1-301
               
               
               Cow position:chr6:37199569-37199280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):21, 112

               
               
               Conread position:1-304
               
               
               Cow position:chr6:21869688-21869389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):51, 218

               
               
               Conread position:1-304
               
               
               Cow position:chr6:35993547-35993847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 167

               
               
               Conread position:1-326
               
               
               Cow position:chr6:47339398-47339061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 202

               
               
               Conread position:1-426
               
               
               Cow position:chr6:48010559-48010128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):42, 64

               
               
               Conread position:2-184
               
               
               Cow position:chr6:24004499-24004689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 50

               
               
               Conread position:2-304
               
               
               Cow position:chr6:8209641-8209335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):26, 147

               
               
               Conread position:3-197
               
               
               Cow position:chr6:45690638-45690444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):90, 24

               
               
               Conread position:3-213
               
               
               Cow position:chr6:46283045-46282821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 71

               
               
               Conread position:3-216
               
               
               Cow position:chr6:65259526-65259306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):22, 44

               
               
               Conread position:3-223
               
               
               Cow position:chr6:48468961-48469184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):18, 175

               
               
               Conread position:3-239
               
               
               Cow position:chr6:23532614-23532865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):22, 123

               
               
               Conread position:3-300
               
               
               Cow position:chr6:60266217-60265933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):48, 35

               
               
               Conread position:4-176
               
               
               Cow position:chr6:32853152-32853332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:4-201
               
               
               Cow position:chr6:44078483-44078684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 51

               
               
               Conread position:4-237
               
               
               Cow position:chr6:6343392-6343635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):24, 57

               
               
               Conread position:5-165
               
               
               Cow position:chr6:28318371-28318530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):107, 38

               
               
               Conread position:5-173
               
               
               Cow position:chr6:66375363-66375191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:5-175
               
               
               Cow position:chr6:4864581-4864403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-175
               
               
               Cow position:chr6:17527621-17527445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr6:12845352-12845532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 39

               
               
               Conread position:5-184
               
               
               Cow position:chr6:36454624-36454443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):81, 51

               
               
               Conread position:5-186
               
               
               Cow position:chr6:58608472-58608289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):88, 51

               
               
               Conread position:5-187
               
               
               Cow position:chr6:19681561-19681369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:5-187
               
               
               Cow position:chr6:46865622-46865436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:5-188
               
               
               Cow position:chr6:10039689-10039880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):46, 32

               
               
               Conread position:5-188
               
               
               Cow position:chr6:11830162-11830344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):32, 22

               
               
               Conread position:5-188
               
               
               Cow position:chr6:60516792-60516982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):18, 118

               
               
               Conread position:5-189
               
               
               Cow position:chr6:15937884-15937697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):52, 19

               
               
               Conread position:5-189
               
               
               Cow position:chr6:16700232-16700409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:5-189
               
               
               Cow position:chr6:34196183-34195991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):54, 33

               
               
               Conread position:5-189
               
               
               Cow position:chr6:53932880-53932690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):41, 176

               
               
               Conread position:5-190
               
               
               Cow position:chr6:1429608-1429798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):48, 165

               
               
               Conread position:5-190
               
               
               Cow position:chr6:28977077-28976881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-190
               
               
               Cow position:chr6:42565656-42565846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):46, 166

               
               
               Conread position:5-191
               
               
               Cow position:chr6:11246730-11246926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):43, 176

               
               
               Conread position:5-192
               
               
               Cow position:chr6:9008644-9008450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-192
               
               
               Cow position:chr6:20196331-20196142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):21, 34

               
               
               Conread position:5-193
               
               
               Cow position:chr6:31564372-31564178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 124

               
               
               Conread position:5-194
               
               
               Cow position:chr6:45065049-45064855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 54

               
               
               Conread position:5-195
               
               
               Cow position:chr6:16352380-16352190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:5-195
               
               
               Cow position:chr6:38771253-38771444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:5-196
               
               
               Cow position:chr6:32126029-32126220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):81, 41

               
               
               Conread position:5-196
               
               
               Cow position:chr6:33509757-33509951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):43, 109

               
               
               Conread position:5-197
               
               
               Cow position:chr6:38441143-38441338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:5-197
               
               
               Cow position:chr6:47574873-47575072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 61

               
               
               Conread position:5-197
               
               
               Cow position:chr6:60739983-60740180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr6:2623749-2623941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):62, 38

               
               
               Conread position:5-198
               
               
               Cow position:chr6:16191641-16191838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):45, 125

               
               
               Conread position:5-198
               
               
               Cow position:chr6:52478447-52478245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):33, 185

               
               
               Conread position:5-198
               
               
               Cow position:chr6:68652386-68652182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr6:19045593-19045792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):83, 45

               
               
               Conread position:5-201
               
               
               Cow position:chr6:19446220-19446422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):54, 109

               
               
               Conread position:5-201
               
               
               Cow position:chr6:54867481-54867687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-202
               
               
               Cow position:chr6:65264571-65264377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):104, 38

               
               
               Conread position:5-204
               
               
               Cow position:chr6:16288085-16287887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):85, 45

               
               
               Conread position:5-204
               
               
               Cow position:chr6:36652386-36652596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 165

               
               
               Conread position:5-204
               
               
               Cow position:chr6:37395441-37395227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-204
               
               
               Cow position:chr6:46465790-46465994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:5-204
               
               
               Cow position:chr6:58370721-58370923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 122

               
               
               Conread position:5-207
               
               
               Cow position:chr6:3952485-3952694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr6:8125292-8125502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr6:38853688-38853483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 57

               
               
               Conread position:5-207
               
               
               Cow position:chr6:41375737-41375943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 112

               
               
               Conread position:5-207
               
               
               Cow position:chr6:43345476-43345267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):50, 33

               
               
               Conread position:5-207
               
               
               Cow position:chr6:51835365-51835572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):50, 167

               
               
               Conread position:5-208
               
               
               Cow position:chr6:611517-611723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):41, 21

               
               
               Conread position:5-208
               
               
               Cow position:chr6:5609479-5609270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):49, 33

               
               
               Conread position:5-209
               
               
               Cow position:chr6:4692012-4691798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):41, 156

               
               
               Conread position:5-209
               
               
               Cow position:chr6:9302748-9302542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):35, 56

               
               
               Conread position:5-209
               
               
               Cow position:chr6:10399937-10399737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:5-209
               
               
               Cow position:chr6:24781589-24781384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):17, 104

               
               
               Conread position:5-212
               
               
               Cow position:chr6:15242799-15243019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-213
               
               
               Cow position:chr6:67950919-67951129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):50, 102

               
               
               Conread position:5-214
               
               
               Cow position:chr6:12092026-12091810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 201

               
               
               Conread position:5-214
               
               
               Cow position:chr6:38641461-38641676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):54, 106

               
               
               Conread position:5-217
               
               
               Cow position:chr6:4468735-4468948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:5-217
               
               
               Cow position:chr6:12669070-12669279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:5-218
               
               
               Cow position:chr6:3592366-3592582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):46, 112

               
               
               Conread position:5-218
               
               
               Cow position:chr6:36284209-36284428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):58, 38

               
               
               Conread position:5-223
               
               
               Cow position:chr6:37149155-37149380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):58, 221

               
               
               Conread position:5-226
               
               
               Cow position:chr6:21231492-21231722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):57, 38

               
               
               Conread position:5-232
               
               
               Cow position:chr6:23466062-23465832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):88, 59

               
               
               Conread position:5-237
               
               
               Cow position:chr6:18049057-18048823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 153

               
               
               Conread position:5-239
               
               
               Cow position:chr6:54991036-54990794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 206

               
               
               Conread position:5-294
               
               
               Cow position:chr6:51674880-51675164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):54, 21

               
               
               Conread position:5-304
               
               
               Cow position:chr6:2153631-2153312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-304
               
               
               Cow position:chr6:67456689-67456978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):88, 52

               
               
               Conread position:5-307
               
               
               Cow position:chr6:30974014-30974319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:5-307
               
               
               Cow position:chr6:66531854-66531526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):48, 14

               
               
               Conread position:5-308
               
               
               Cow position:chr6:35964567-35964239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):38, 103

               
               
               Conread position:5-310
               
               
               Cow position:chr6:60057687-60057393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):35, 167

               
               
               Conread position:5-312
               
               
               Cow position:chr6:23353520-23353803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):47, 138

               
               
               Conread position:6-201
               
               
               Cow position:chr6:65903654-65903455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 28

               
               
               Conread position:6-206
               
               
               Cow position:chr6:52412829-52413034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:6-209
               
               
               Cow position:chr6:15447235-15447020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:6-223
               
               
               Cow position:chr6:47799260-47799485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:7-170
               
               
               Cow position:chr6:38614785-38614951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:7-172
               
               
               Cow position:chr6:61142595-61142421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:7-175
               
               
               Cow position:chr6:66874319-66874493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):44, 158

               
               
               Conread position:7-195
               
               
               Cow position:chr6:59603242-59603044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:7-196
               
               
               Cow position:chr6:6201397-6201589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):46, 29

               
               
               Conread position:7-198
               
               
               Cow position:chr6:13565053-13565253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:7-204
               
               
               Cow position:chr6:67187651-67187857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):41, 31

               
               
               Conread position:7-206
               
               
               Cow position:chr6:23298292-23298477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 85

               
               
               Conread position:7-207
               
               
               Cow position:chr6:445290-445501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:7-207
               
               
               Cow position:chr6:17794792-17794586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:7-237
               
               
               Cow position:chr6:51399053-51399282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):81, 37

               
               
               Conread position:7-290
               
               
               Cow position:chr6:55535780-55535489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 110

               
               
               Conread position:8-187
               
               
               Cow position:chr6:36645352-36645543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:8-209
               
               
               Cow position:chr6:15243224-15243433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):42, 30

               
               
               Conread position:8-215
               
               
               Cow position:chr6:56986675-56986469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):85, 95

               
               
               Conread position:11-176
               
               
               Cow position:chr6:47885051-47884885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):11, 34

               
               
               Conread position:12-194
               
               
               Cow position:chr6:57287688-57287500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):44, 37

               
               
               Conread position:12-198
               
               
               Cow position:chr6:38640203-38640400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:13-189
               
               
               Cow position:chr6:12500832-12501007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):10, 31

               
               
               Conread position:13-189
               
               
               Cow position:chr6:59069653-59069462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:13-251
               
               
               Cow position:chr6:21235016-21235263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):38, 219

               
               
               Conread position:15-197
               
               
               Cow position:chr6:32867237-32867053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):23, 45

               
               
               Conread position:15-201
               
               
               Cow position:chr6:21514633-21514438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 23

               
               
               Conread position:15-207
               
               
               Cow position:chr6:7539551-7539746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):7, 37

               
               
               Conread position:16-209
               
               
               Cow position:chr6:24339260-24339459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 165

               
               
               Conread position:17-184
               
               
               Cow position:chr6:33929571-33929394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:17-207
               
               
               Cow position:chr6:57546245-57546053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):29, 106

               
               
               Conread position:19-184
               
               
               Cow position:chr6:19013049-19013215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):37, 99

               
               
               Conread position:19-196
               
               
               Cow position:chr6:67323293-67323474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:19-207
               
               
               Cow position:chr6:21467279-21467092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):74, 45

               
               
               Conread position:20-175
               
               
               Cow position:chr6:17527380-17527221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):35, 142

               
               
               Conread position:20-175
               
               
               Cow position:chr6:65846144-65845988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):71, 23

               
               
               Conread position:20-182
               
               
               Cow position:chr6:60667402-60667561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):59, 23

               
               
               Conread position:20-184
               
               
               Cow position:chr6:57089178-57089356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-184
               
               
               Cow position:chr6:62669850-62670018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:20-187
               
               
               Cow position:chr6:55502747-55502922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:20-189
               
               
               Cow position:chr6:35435974-35436153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:20-194
               
               
               Cow position:chr6:59301806-59301627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):28, 168

               
               
               Conread position:20-196
               
               
               Cow position:chr6:62371192-62371016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):39, 18

               
               
               Conread position:20-196
               
               
               Cow position:chr6:67574385-67574552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):91, 22

               
               
               Conread position:20-197
               
               
               Cow position:chr6:63299050-63298868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 168

               
               
               Conread position:20-198
               
               
               Cow position:chr6:2584923-2585109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-201
               
               
               Cow position:chr6:14914259-14914066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-201
               
               
               Cow position:chr6:19996599-19996782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):26, 136

               
               
               Conread position:20-201
               
               
               Cow position:chr6:46558036-46558225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):26, 8

               
               
               Conread position:20-204
               
               
               Cow position:chr6:22525314-22525502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-204
               
               
               Cow position:chr6:47958794-47958985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):28, 77

               
               
               Conread position:20-207
               
               
               Cow position:chr6:5330392-5330587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):28, 153

               
               
               Conread position:20-207
               
               
               Cow position:chr6:19695792-19695982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:20-207
               
               
               Cow position:chr6:28483002-28483190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):12, 18

               
               
               Conread position:20-209
               
               
               Cow position:chr6:38207509-38207314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):30, 7

               
               
               Conread position:20-214
               
               
               Cow position:chr6:8599987-8600182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):73, 36

               
               
               Conread position:20-215
               
               
               Cow position:chr6:51530203-51530006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):68, 26

               
               
               Conread position:20-219
               
               
               Cow position:chr6:18144173-18144383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):23, 184

               
               
               Conread position:20-227
               
               
               Cow position:chr6:44623589-44623806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 176

               
               
               Conread position:20-229
               
               
               Cow position:chr6:43134956-43134740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):26, 206

               
               
               Conread position:20-237
               
               
               Cow position:chr6:582290-582062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:20-239
               
               
               Cow position:chr6:51086052-51086270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):33, 134

               
               
               Conread position:20-299
               
               
               Cow position:chr6:5302434-5302168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):65, 164

               
               
               Conread position:20-304
               
               
               Cow position:chr6:35103351-35103047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:20-318
               
               
               Cow position:chr6:14958363-14958047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):30, 301

               
               
               Conread position:21-167
               
               
               Cow position:chr6:27110592-27110733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):70, 25

               
               
               Conread position:21-184
               
               
               Cow position:chr6:14949497-14949328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 92

               
               
               Conread position:21-198
               
               
               Cow position:chr6:55417544-55417361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):42, 22

               
               
               Conread position:21-206
               
               
               Cow position:chr6:5845189-5844996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:21-207
               
               
               Cow position:chr6:10176313-10176126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):65, 29

               
               
               Conread position:21-207
               
               
               Cow position:chr6:18447526-18447342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):73, 14

               
               
               Conread position:21-208
               
               
               Cow position:chr6:1871211-1871023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):12, 26

               
               
               Conread position:21-226
               
               
               Cow position:chr6:66131290-66131499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 158

               
               
               Conread position:21-239
               
               
               Cow position:chr6:10612836-10613053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 64

               
               
               Conread position:21-317
               
               
               Cow position:chr6:59718779-59719062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):30, 161

               
               
               Conread position:22-179
               
               
               Cow position:chr6:13053778-13053945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:22-206
               
               
               Cow position:chr6:64431919-64432113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:22-243
               
               
               Cow position:chr6:7801410-7801190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):24, 75

               
               
               Conread position:23-195
               
               
               Cow position:chr6:20219794-20219612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):23, 162

               
               
               Conread position:23-206
               
               
               Cow position:chr6:1103752-1103564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):32, 139

               
               
               Conread position:23-207
               
               
               Cow position:chr6:5095562-5095366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:23-231
               
               
               Cow position:chr6:21590690-21590907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):23, 205

               
               
               Conread position:24-192
               
               
               Cow position:chr6:18988202-18988370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):85, 33

               
               
               Conread position:24-222
               
               
               Cow position:chr6:16764669-16764455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:25-201
               
               
               Cow position:chr6:27219165-27219337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:25-209
               
               
               Cow position:chr6:32453373-32453560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:25-220
               
               
               Cow position:chr6:19131416-19131619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:26-207
               
               
               Cow position:chr6:48379628-48379438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:26-207
               
               
               Cow position:chr6:62437400-62437590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:26-208
               
               
               Cow position:chr6:13367271-13367462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:26-304
               
               
               Cow position:chr6:35896354-35896088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):27, 12

               
               
               Conread position:28-232
               
               
               Cow position:chr6:60451421-60451627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:164
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):58, 36

               
               
               Conread position:29-194
               
               
               Cow position:chr6:21535029-21535202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:31-310
               
               
               Cow position:chr6:10224194-10224460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):22, 64

               
               
               Conread position:32-201
               
               
               Cow position:chr6:46173268-46173090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):14, 158

               
               
               Conread position:32-209
               
               
               Cow position:chr6:21004671-21004853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):51, 154

               
               
               Conread position:32-304
               
               
               Cow position:chr6:37783395-37783665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):31, 11

               
               
               Conread position:33-178
               
               
               Cow position:chr6:36011901-36012049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):31, 10

               
               
               Conread position:35-201
               
               
               Cow position:chr6:8688847-8688679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):55, 149

               
               
               Conread position:35-202
               
               
               Cow position:chr6:39093751-39093919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):49, 11

               
               
               Conread position:36-188
               
               
               Cow position:chr6:67451369-67451214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):49, 28

               
               
               Conread position:36-196
               
               
               Cow position:chr6:10105978-10105814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 27

               
               
               Conread position:36-198
               
               
               Cow position:chr6:61575825-61575986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 57

               
               
               Conread position:37-204
               
               
               Cow position:chr6:120249-120418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):12, 26

               
               
               Conread position:37-223
               
               
               Cow position:chr6:7568126-7568315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 20

               
               
               Conread position:37-304
               
               
               Cow position:chr6:67214750-67215009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):23, 159

               
               
               Conread position:38-188
               
               
               Cow position:chr6:8731413-8731569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):55, 12

               
               
               Conread position:38-201
               
               
               Cow position:chr6:9718914-9718744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:39-194
               
               
               Cow position:chr6:21475733-21475889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):54, 18

               
               
               Conread position:39-196
               
               
               Cow position:chr6:16316317-16316481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:40-324
               
               
               Cow position:chr6:46330926-46331213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):18, 69

               
               
               Conread position:41-187
               
               
               Cow position:chr6:63047595-63047748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:41-207
               
               
               Cow position:chr6:57079428-57079599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:41-308
               
               
               Cow position:chr6:6098257-6098005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):14, 37

               
               
               Conread position:43-178
               
               
               Cow position:chr6:314842-314980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:45-198
               
               
               Cow position:chr6:41937263-41937104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):38, 113

               
               
               Conread position:45-201
               
               
               Cow position:chr6:47245791-47245951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 27

               
               
               Conread position:45-229
               
               
               Cow position:chr6:19225363-19225189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:46-201
               
               
               Cow position:chr6:58304421-58304583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):16, 140

               
               
               Conread position:46-201
               
               
               Cow position:chr6:69153424-69153579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):63, 41

               
               
               Conread position:46-208
               
               
               Cow position:chr6:61168767-61168928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):48, 16

               
               
               Conread position:46-237
               
               
               Cow position:chr6:53090021-53090215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:47-192
               
               
               Cow position:chr6:54573271-54573421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:47-206
               
               
               Cow position:chr6:48435844-48436004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):12, 66

               
               
               Conread position:47-213
               
               
               Cow position:chr6:34569421-34569587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):46, 21

               
               
               Conread position:47-292
               
               
               Cow position:chr6:49096439-49096201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):46, 56

               
               
               Conread position:51-207
               
               
               Cow position:chr6:8369439-8369597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):8, 63

               
               
               Conread position:53-207
               
               
               Cow position:chr6:50771341-50771187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 41

               
               
               Conread position:56-207
               
               
               Cow position:chr6:66259750-66259910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:56-304
               
               
               Cow position:chr6:61128936-61128687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):30, 136

               
               
               Conread position:57-188
               
               
               Cow position:chr6:43787889-43787754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-193
               
               
               Cow position:chr6:16707037-16707174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-196
               
               
               Cow position:chr6:31865120-31865257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):30, 46

               
               
               Conread position:57-198
               
               
               Cow position:chr6:33150270-33150127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:57-198
               
               
               Cow position:chr6:54127791-54127649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):36, 81

               
               
               Conread position:57-201
               
               
               Cow position:chr6:33450948-33450806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):49, 36

               
               
               Conread position:57-201
               
               
               Cow position:chr6:37692773-37692919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):23, 99

               
               
               Conread position:57-201
               
               
               Cow position:chr6:66947796-66947652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):52, 36

               
               
               Conread position:57-204
               
               
               Cow position:chr6:40774310-40774159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-212
               
               
               Cow position:chr6:67805993-67805835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):29, 145

               
               
               Conread position:57-304
               
               
               Cow position:chr6:51969099-51969347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):37, 132

               
               
               Conread position:57-308
               
               
               Cow position:chr6:21066862-21066605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 231

               
               
               Conread position:57-310
               
               
               Cow position:chr6:18454321-18454082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):36, 56

               
               
               Conread position:62-197
               
               
               Cow position:chr6:50883651-50883511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):28, 124

               
               
               Conread position:62-201
               
               
               Cow position:chr6:21587403-21587261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 70

               
               
               Conread position:62-209
               
               
               Cow position:chr6:36643465-36643317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 90

               
               
               Conread position:62-220
               
               
               Cow position:chr6:66433977-66434139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):28, 152

               
               
               Conread position:63-207
               
               
               Cow position:chr6:16380572-16380720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:63-245
               
               
               Cow position:chr6:54864628-54864445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):111, 30

               
               
               Conread position:65-310
               
               
               Cow position:chr6:54349724-54349978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:66-213
               
               
               Cow position:chr6:60516656-60516806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:68-207
               
               
               Cow position:chr6:22876898-22876755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:69-233
               
               
               Cow position:chr6:3936818-3936986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:70-207
               
               
               Cow position:chr6:8468700-8468841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:72-196
               
               
               Cow position:chr6:29853028-29852901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:73-285
               
               
               Cow position:chr6:23656735-23656503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):20, 97

               
               
               Conread position:74-204
               
               
               Cow position:chr6:15058415-15058549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:78-210
               
               
               Cow position:chr6:60777812-60777948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):9, 107

               
               
               Conread position:79-206
               
               
               Cow position:chr6:15974476-15974349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 28

               
               
               Conread position:79-207
               
               
               Cow position:chr6:36225154-36225283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):8, 103

               
               
               Conread position:79-221
               
               
               Cow position:chr6:107379-107236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):8, 103

               
               
               Conread position:79-224
               
               
               Cow position:chr6:37603612-37603756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):20, 9

               
               
               Conread position:79-312
               
               
               Cow position:chr6:32809328-32809563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:79-329
               
               
               Cow position:chr6:67689569-67689321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):9, 63

               
               
               Conread position:80-293
               
               
               Cow position:chr6:46997745-46997536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):30, 15

               
               
               Conread position:80-312
               
               
               Cow position:chr6:58076440-58076684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:81-263
               
               
               Cow position:chr6:47676060-47676238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):11, 112

               
               
               Conread position:81-309
               
               
               Cow position:chr6:49607440-49607654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):6, 112

               
               
               Conread position:82-197
               
               
               Cow position:chr6:26408454-26408339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):31, 7

               
               
               Conread position:82-201
               
               
               Cow position:chr6:44544099-44543980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 99

               
               
               Conread position:82-207
               
               
               Cow position:chr6:49685869-49685993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:82-296
               
               
               Cow position:chr6:19508139-19507932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):5, 112

               
               
               Conread position:84-207
               
               
               Cow position:chr6:30895940-30895817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):26, 97

               
               
               Conread position:84-310
               
               
               Cow position:chr6:5673432-5673639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):12, 41

               
               
               Conread position:86-198
               
               
               Cow position:chr6:35654496-35654383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-206
               
               
               Cow position:chr6:62478816-62478695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-209
               
               
               Cow position:chr6:35985083-35984961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):24, 107

               
               
               Conread position:86-238
               
               
               Cow position:chr6:32184994-32184838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-307
               
               
               Cow position:chr6:35702291-35702084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):20, 106

               
               
               Conread position:88-194
               
               
               Cow position:chr6:34380759-34380654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):21, 50

               
               
               Conread position:88-201
               
               
               Cow position:chr6:58697576-58697462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:88-351
               
               
               Cow position:chr6:53513966-53513693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:89-304
               
               
               Cow position:chr6:60239049-60238824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):21, 221

               
               
               Conread position:89-312
               
               
               Cow position:chr6:38234289-38234506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):82, 120

               
               
               Conread position:93-206
               
               
               Cow position:chr6:18440417-18440303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:93-217
               
               
               Cow position:chr6:53811643-53811768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 105

               
               
               Conread position:93-310
               
               
               Cow position:chr6:68343769-68343983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):17, 86

               
               
               Conread position:94-304
               
               
               Cow position:chr6:139582-139387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:100-308
               
               
               Cow position:chr6:3447798-3447993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):10, 82

               
               
               Conread position:109-198
               
               
               Cow position:chr6:48278811-48278722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:90
               
               
               Alignm identity:78
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:109-290
               
               
               Cow position:chr6:36516038-36516210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:109-311
               
               
               Cow position:chr6:50882659-50882851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):197, 82

               
               
               Conread position:110-303
               
               
               Cow position:chr6:31231249-31231052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:116-221
               
               
               Cow position:chr6:358686-358791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:119-304
               
               
               Cow position:chr6:54364684-54364490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:122-307
               
               
               Cow position:chr6:13327084-13326911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:122-307
               
               
               Cow position:chr6:63471322-63471505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):117, 167

               
               
               Conread position:127-304
               
               
               Cow position:chr6:35628141-35628306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:140-304
               
               
               Cow position:chr6:20548617-20548777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:144-309
               
               
               Cow position:chr6:59994094-59994270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:154-310
               
               
               Cow position:chr6:18615464-18615311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):57, 84

               
               
               Conread position:165-308
               
               
               Cow position:chr6:61544283-61544141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:1-179
               
               
               Cow position:chr7:21122299-21122109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-179
               
               
               Cow position:chr7:65122300-65122482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 64

               
               
               Conread position:1-186
               
               
               Cow position:chr7:61731927-61731735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:1-188
               
               
               Cow position:chr7:12358126-12357940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):111, 8

               
               
               Conread position:1-188
               
               
               Cow position:chr7:52758440-52758627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):49, 93

               
               
               Conread position:1-189
               
               
               Cow position:chr7:24220634-24220829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):58, 42

               
               
               Conread position:1-195
               
               
               Cow position:chr7:255848-255653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):50, 111

               
               
               Conread position:1-196
               
               
               Cow position:chr7:25415357-25415561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 39

               
               
               Conread position:1-198
               
               
               Cow position:chr7:26737378-26737177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):20, 51

               
               
               Conread position:1-198
               
               
               Cow position:chr7:32807420-32807617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):17, 113

               
               
               Conread position:1-198
               
               
               Cow position:chr7:51019739-51019947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:1-200
               
               
               Cow position:chr7:19466287-19466080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:1-200
               
               
               Cow position:chr7:61790391-61790182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):20, 202

               
               
               Conread position:1-201
               
               
               Cow position:chr7:28563423-28563218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):45, 58

               
               
               Conread position:1-201
               
               
               Cow position:chr7:37697760-37697977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-201
               
               
               Cow position:chr7:52718677-52718467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 121

               
               
               Conread position:1-201
               
               
               Cow position:chr7:65325791-65325583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:1-202
               
               
               Cow position:chr7:2896728-2896931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 95

               
               
               Conread position:1-203
               
               
               Cow position:chr7:36317149-36317354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):58, 18

               
               
               Conread position:1-204
               
               
               Cow position:chr7:15559649-15559862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1-204
               
               
               Cow position:chr7:35286680-35286465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):19, 77

               
               
               Conread position:1-205
               
               
               Cow position:chr7:52776793-52776585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):21, 116

               
               
               Conread position:1-206
               
               
               Cow position:chr7:914010-914221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):62, 37

               
               
               Conread position:1-209
               
               
               Cow position:chr7:11443957-11444166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):37, 63

               
               
               Conread position:1-209
               
               
               Cow position:chr7:31694671-31694458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:1-212
               
               
               Cow position:chr7:45158084-45158300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):21, 159

               
               
               Conread position:1-214
               
               
               Cow position:chr7:56347859-56347642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):62, 36

               
               
               Conread position:1-217
               
               
               Cow position:chr7:23636670-23636890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 44

               
               
               Conread position:1-217
               
               
               Cow position:chr7:39129643-39129423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):29, 186

               
               
               Conread position:1-219
               
               
               Cow position:chr7:59075806-59076042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:1-221
               
               
               Cow position:chr7:28095835-28096062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):21, 117

               
               
               Conread position:1-299
               
               
               Cow position:chr7:52383018-52382721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 180

               
               
               Conread position:1-309
               
               
               Cow position:chr7:15566710-15567043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:245
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):18, 265

               
               
               Conread position:1-311
               
               
               Cow position:chr7:34422305-34422005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):21, 99

               
               
               Conread position:1-311
               
               
               Cow position:chr7:38025790-38026103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):52, 165

               
               
               Conread position:1-311
               
               
               Cow position:chr7:41464432-41464735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 99

               
               
               Conread position:1-312
               
               
               Cow position:chr7:39518257-39518569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):20, 40

               
               
               Conread position:1-314
               
               
               Cow position:chr7:10551018-10550674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):18, 293

               
               
               Conread position:2-194
               
               
               Cow position:chr7:32910506-32910702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):46, 73

               
               
               Conread position:2-207
               
               
               Cow position:chr7:58967229-58967445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):17, 54

               
               
               Conread position:3-158
               
               
               Cow position:chr7:59558205-59558048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:3-159
               
               
               Cow position:chr7:56081562-56081726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:3-176
               
               
               Cow position:chr7:6058088-6058275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:3-201
               
               
               Cow position:chr7:14029287-14029481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 39

               
               
               Conread position:3-201
               
               
               Cow position:chr7:63749515-63749304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:3-207
               
               
               Cow position:chr7:34974263-34974485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):15, 207

               
               
               Conread position:3-207
               
               
               Cow position:chr7:50165990-50166205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):25, 201

               
               
               Conread position:3-236
               
               
               Cow position:chr7:24873132-24872892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):16, 129

               
               
               Conread position:4-146
               
               
               Cow position:chr7:44589882-44589741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):56, 39

               
               
               Conread position:4-184
               
               
               Cow position:chr7:20375-20564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 148

               
               
               Conread position:4-195
               
               
               Cow position:chr7:4892830-4893024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):47, 94

               
               
               Conread position:4-201
               
               
               Cow position:chr7:41293779-41293574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:4-202
               
               
               Cow position:chr7:38060460-38060253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:4-209
               
               
               Cow position:chr7:44454310-44454100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):42, 205

               
               
               Conread position:5-143
               
               
               Cow position:chr7:13218172-13218034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):86, 8

               
               
               Conread position:5-157
               
               
               Cow position:chr7:17757008-17757160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:5-163
               
               
               Cow position:chr7:2884309-2884471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):37, 89

               
               
               Conread position:5-163
               
               
               Cow position:chr7:37142399-37142239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):74, 38

               
               
               Conread position:5-165
               
               
               Cow position:chr7:23251593-23251430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):59, 103

               
               
               Conread position:5-171
               
               
               Cow position:chr7:5212507-5212334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):59, 38

               
               
               Conread position:5-171
               
               
               Cow position:chr7:63679047-63679214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 102

               
               
               Conread position:5-175
               
               
               Cow position:chr7:19267399-19267225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 79

               
               
               Conread position:5-176
               
               
               Cow position:chr7:14174447-14174279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:5-179
               
               
               Cow position:chr7:9193274-9193087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-179
               
               
               Cow position:chr7:32079419-32079601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):50, 132

               
               
               Conread position:5-184
               
               
               Cow position:chr7:8110280-8110096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr7:54054557-54054741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):53, 153

               
               
               Conread position:5-186
               
               
               Cow position:chr7:1720998-1720812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):36, 106

               
               
               Conread position:5-186
               
               
               Cow position:chr7:40308546-40308362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):85, 38

               
               
               Conread position:5-187
               
               
               Cow position:chr7:34412304-34412120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):58, 91

               
               
               Conread position:5-187
               
               
               Cow position:chr7:53989023-53989208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 106

               
               
               Conread position:5-187
               
               
               Cow position:chr7:66894571-66894383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):57, 167

               
               
               Conread position:5-188
               
               
               Cow position:chr7:11011714-11011520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):39, 19

               
               
               Conread position:5-188
               
               
               Cow position:chr7:68315212-68315392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):55, 106

               
               
               Conread position:5-189
               
               
               Cow position:chr7:4129814-4129620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr7:9108430-9108621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):45, 171

               
               
               Conread position:5-189
               
               
               Cow position:chr7:14450310-14450485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr7:19230545-19230353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):58, 38

               
               
               Conread position:5-189
               
               
               Cow position:chr7:40303295-40303096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-194
               
               
               Cow position:chr7:3336582-3336391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):44, 147

               
               
               Conread position:5-195
               
               
               Cow position:chr7:600304-600490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 92

               
               
               Conread position:5-196
               
               
               Cow position:chr7:32711006-32710818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):54, 97

               
               
               Conread position:5-197
               
               
               Cow position:chr7:44596730-44596534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:5-198
               
               
               Cow position:chr7:5199581-5199383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):45, 168

               
               
               Conread position:5-198
               
               
               Cow position:chr7:5853327-5853517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):102, 71

               
               
               Conread position:5-198
               
               
               Cow position:chr7:9136803-9137007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:167
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr7:13593736-13593937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr7:13963173-13963382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr7:18947776-18947581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 179

               
               
               Conread position:5-198
               
               
               Cow position:chr7:30017549-30017349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 113

               
               
               Conread position:5-198
               
               
               Cow position:chr7:48714821-48715025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-200
               
               
               Cow position:chr7:18188258-18188058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):38, 89

               
               
               Conread position:5-200
               
               
               Cow position:chr7:28544145-28544347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):38, 62

               
               
               Conread position:5-200
               
               
               Cow position:chr7:31315282-31315479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):88, 57

               
               
               Conread position:5-201
               
               
               Cow position:chr7:11549634-11549834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):59, 192

               
               
               Conread position:5-201
               
               
               Cow position:chr7:38429742-38429542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:5-201
               
               
               Cow position:chr7:62603154-62603351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):107, 33

               
               
               Conread position:5-201
               
               
               Cow position:chr7:62953484-62953685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:5-202
               
               
               Cow position:chr7:25785806-25786012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):44, 30

               
               
               Conread position:5-202
               
               
               Cow position:chr7:34214564-34214764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):83, 38

               
               
               Conread position:5-204
               
               
               Cow position:chr7:8089130-8089340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:5-204
               
               
               Cow position:chr7:14536311-14536106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):45, 106

               
               
               Conread position:5-204
               
               
               Cow position:chr7:29505082-29505290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:166
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:5-204
               
               
               Cow position:chr7:30155984-30155773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-204
               
               
               Cow position:chr7:47547376-47547583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 32

               
               
               Conread position:5-205
               
               
               Cow position:chr7:40008790-40009006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-205
               
               
               Cow position:chr7:67820084-67820293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:5-206
               
               
               Cow position:chr7:12408266-12408065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):16, 12

               
               
               Conread position:5-207
               
               
               Cow position:chr7:18388429-18388221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):48, 32

               
               
               Conread position:5-207
               
               
               Cow position:chr7:25263344-25263546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):88, 67

               
               
               Conread position:5-207
               
               
               Cow position:chr7:38361262-38361060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):88, 28

               
               
               Conread position:5-207
               
               
               Cow position:chr7:64135495-64135290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):81, 179

               
               
               Conread position:5-208
               
               
               Cow position:chr7:30932006-30931800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):47, 105

               
               
               Conread position:5-208
               
               
               Cow position:chr7:33280024-33279818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):43, 32

               
               
               Conread position:5-209
               
               
               Cow position:chr7:20411559-20411347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):50, 21

               
               
               Conread position:5-209
               
               
               Cow position:chr7:50566230-50566019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):58, 25

               
               
               Conread position:5-209
               
               
               Cow position:chr7:62542627-62542841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 185

               
               
               Conread position:5-212
               
               
               Cow position:chr7:43109561-43109356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):89, 31

               
               
               Conread position:5-213
               
               
               Cow position:chr7:17713503-17713286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):54, 33

               
               
               Conread position:5-213
               
               
               Cow position:chr7:47697979-47698189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):38, 94

               
               
               Conread position:5-214
               
               
               Cow position:chr7:33720003-33720216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):48, 137

               
               
               Conread position:5-214
               
               
               Cow position:chr7:41328071-41327853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):38, 188

               
               
               Conread position:5-214
               
               
               Cow position:chr7:58862917-58862699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):41, 115

               
               
               Conread position:5-215
               
               
               Cow position:chr7:42894415-42894635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):43, 109

               
               
               Conread position:5-222
               
               
               Cow position:chr7:25512153-25511928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:5-223
               
               
               Cow position:chr7:26911471-26911246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):16, 117

               
               
               Conread position:5-233
               
               
               Cow position:chr7:64364559-64364320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-242
               
               
               Cow position:chr7:1792490-1792239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):38, 14

               
               
               Conread position:5-259
               
               
               Cow position:chr7:25867519-25867274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):88, 47

               
               
               Conread position:5-261
               
               
               Cow position:chr7:168699-168435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):46, 38

               
               
               Conread position:5-296
               
               
               Cow position:chr7:40067629-40067913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):54, 150

               
               
               Conread position:5-304
               
               
               Cow position:chr7:147381-147689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):45, 81

               
               
               Conread position:5-304
               
               
               Cow position:chr7:22651851-22651566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:5-304
               
               
               Cow position:chr7:45331508-45331817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):42, 68

               
               
               Conread position:5-304
               
               
               Cow position:chr7:51319768-51320082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):50, 250

               
               
               Conread position:5-304
               
               
               Cow position:chr7:58923367-58923670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 38

               
               
               Conread position:5-310
               
               
               Cow position:chr7:40074643-40074966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):33, 289

               
               
               Conread position:5-312
               
               
               Cow position:chr7:9800323-9800628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:5-319
               
               
               Cow position:chr7:27283652-27283968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:6-175
               
               
               Cow position:chr7:11869868-11869693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 93

               
               
               Conread position:6-185
               
               
               Cow position:chr7:23568768-23568580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:6-186
               
               
               Cow position:chr7:47931827-47931639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:6-192
               
               
               Cow position:chr7:40894509-40894705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:6-196
               
               
               Cow position:chr7:63946613-63946419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):46, 37

               
               
               Conread position:6-209
               
               
               Cow position:chr7:11783460-11783254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):53, 149

               
               
               Conread position:6-216
               
               
               Cow position:chr7:10381772-10381987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):48, 136

               
               
               Conread position:6-311
               
               
               Cow position:chr7:17816720-17817022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 54

               
               
               Conread position:7-188
               
               
               Cow position:chr7:2172721-2172909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):39, 52

               
               
               Conread position:7-201
               
               
               Cow position:chr7:9161696-9161503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):83, 34

               
               
               Conread position:7-201
               
               
               Cow position:chr7:24928049-24927852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):36, 58

               
               
               Conread position:7-208
               
               
               Cow position:chr7:15755478-15755269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:7-208
               
               
               Cow position:chr7:33385893-33386101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):46, 31

               
               
               Conread position:7-219
               
               
               Cow position:chr7:44986623-44986843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):51, 131

               
               
               Conread position:7-309
               
               
               Cow position:chr7:20176739-20176436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 91

               
               
               Conread position:7-311
               
               
               Cow position:chr7:40952890-40952599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):41, 102

               
               
               Conread position:8-213
               
               
               Cow position:chr7:23936081-23936294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 204

               
               
               Conread position:9-201
               
               
               Cow position:chr7:48406524-48406322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):13, 194

               
               
               Conread position:9-207
               
               
               Cow position:chr7:41103461-41103669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:11-207
               
               
               Cow position:chr7:25464541-25464744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:12-189
               
               
               Cow position:chr7:14497563-14497741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 33

               
               
               Conread position:12-209
               
               
               Cow position:chr7:25860218-25860027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):41, 83

               
               
               Conread position:12-209
               
               
               Cow position:chr7:32946042-32946249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:12-309
               
               
               Cow position:chr7:24460933-24461217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 26

               
               
               Conread position:13-182
               
               
               Cow position:chr7:49648338-49648510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):50, 25

               
               
               Conread position:13-198
               
               
               Cow position:chr7:29479501-29479695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 179

               
               
               Conread position:13-204
               
               
               Cow position:chr7:28441155-28441353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):35, 14

               
               
               Conread position:15-195
               
               
               Cow position:chr7:22793329-22793510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):78, 38

               
               
               Conread position:15-304
               
               
               Cow position:chr7:61663161-61663446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):33, 23

               
               
               Conread position:17-176
               
               
               Cow position:chr7:14520059-14519894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:17-177
               
               
               Cow position:chr7:49630156-49630325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:17-200
               
               
               Cow position:chr7:14524461-14524649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):35, 181

               
               
               Conread position:17-201
               
               
               Cow position:chr7:38696829-38697014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):76, 26

               
               
               Conread position:17-204
               
               
               Cow position:chr7:7535515-7535713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):29, 161

               
               
               Conread position:17-207
               
               
               Cow position:chr7:47775848-47776039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):68, 20

               
               
               Conread position:17-244
               
               
               Cow position:chr7:30818436-30818682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 221

               
               
               Conread position:17-245
               
               
               Cow position:chr7:15739601-15739374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):72, 138

               
               
               Conread position:19-178
               
               
               Cow position:chr7:11066462-11066628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):40, 93

               
               
               Conread position:19-198
               
               
               Cow position:chr7:37455301-37455487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 19

               
               
               Conread position:19-201
               
               
               Cow position:chr7:55316215-55316030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):40, 24

               
               
               Conread position:19-204
               
               
               Cow position:chr7:60547683-60547491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):29, 131

               
               
               Conread position:20-173
               
               
               Cow position:chr7:8868812-8868971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):73, 17

               
               
               Conread position:20-175
               
               
               Cow position:chr7:39131506-39131353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):63, 25

               
               
               Conread position:20-178
               
               
               Cow position:chr7:33913953-33914120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:20-186
               
               
               Cow position:chr7:5242076-5242248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:20-186
               
               
               Cow position:chr7:29121887-29122057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 100

               
               
               Conread position:20-186
               
               
               Cow position:chr7:57660179-57660007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:20-198
               
               
               Cow position:chr7:25393287-25393468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):29, 63

               
               
               Conread position:20-198
               
               
               Cow position:chr7:36248084-36248266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):26, 77

               
               
               Conread position:20-198
               
               
               Cow position:chr7:39947262-39947080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:20-198
               
               
               Cow position:chr7:48721918-48721737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):26, 91

               
               
               Conread position:20-198
               
               
               Cow position:chr7:68857604-68857419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-201
               
               
               Cow position:chr7:40710106-40710300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:20-202
               
               
               Cow position:chr7:16022279-16022466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):29, 177

               
               
               Conread position:20-204
               
               
               Cow position:chr7:19981860-19981669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-204
               
               
               Cow position:chr7:52784817-52784629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):28, 15

               
               
               Conread position:20-206
               
               
               Cow position:chr7:14938289-14938103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):26, 79

               
               
               Conread position:20-207
               
               
               Cow position:chr7:19797950-19797751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr7:29682469-29682273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:20-207
               
               
               Cow position:chr7:39093943-39093748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr7:41347049-41346854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 23

               
               
               Conread position:20-207
               
               
               Cow position:chr7:42222961-42222761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 154

               
               
               Conread position:20-207
               
               
               Cow position:chr7:46823654-46823848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr7:49636233-49636033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr7:49745440-49745640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr7:51039412-51039609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):25, 121

               
               
               Conread position:20-207
               
               
               Cow position:chr7:67873175-67873371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:20-209
               
               
               Cow position:chr7:25195527-25195725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 7

               
               
               Conread position:20-213
               
               
               Cow position:chr7:4812005-4812190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):66, 23

               
               
               Conread position:20-243
               
               
               Cow position:chr7:57518066-57518287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):59, 23

               
               
               Conread position:20-244
               
               
               Cow position:chr7:57259043-57258812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:182
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):28, 194

               
               
               Conread position:20-300
               
               
               Cow position:chr7:37952165-37952433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):32, 155

               
               
               Conread position:20-310
               
               
               Cow position:chr7:39838895-39838617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):19, 35

               
               
               Conread position:21-198
               
               
               Cow position:chr7:29280030-29279852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):72, 11

               
               
               Conread position:21-201
               
               
               Cow position:chr7:1761710-1761903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:21-207
               
               
               Cow position:chr7:19414466-19414273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:21-213
               
               
               Cow position:chr7:20051479-20051289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):71, 17

               
               
               Conread position:21-401
               
               
               Cow position:chr7:36774351-36774743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 200

               
               
               Conread position:22-201
               
               
               Cow position:chr7:46051641-46051829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):33, 15

               
               
               Conread position:22-204
               
               
               Cow position:chr7:14316927-14317117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):28, 16

               
               
               Conread position:22-207
               
               
               Cow position:chr7:13067147-13067335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:22-217
               
               
               Cow position:chr7:37003804-37003998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 5

               
               
               Conread position:22-264
               
               
               Cow position:chr7:61601328-61601080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 16

               
               
               Conread position:22-308
               
               
               Cow position:chr7:598228-598522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 163

               
               
               Conread position:23-204
               
               
               Cow position:chr7:53053418-53053228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:24-207
               
               
               Cow position:chr7:23677916-23678103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):28, 167

               
               
               Conread position:25-195
               
               
               Cow position:chr7:29345915-29345739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 111

               
               
               Conread position:25-201
               
               
               Cow position:chr7:60121020-60121199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):35, 17

               
               
               Conread position:25-314
               
               
               Cow position:chr7:50857940-50858232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 174

               
               
               Conread position:26-204
               
               
               Cow position:chr7:25722676-25722491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:29-194
               
               
               Cow position:chr7:31523544-31523710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):73, 14

               
               
               Conread position:34-178
               
               
               Cow position:chr7:24869649-24869499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):29, 123

               
               
               Conread position:35-191
               
               
               Cow position:chr7:59258643-59258482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 119

               
               
               Conread position:35-194
               
               
               Cow position:chr7:9175481-9175642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:35-298
               
               
               Cow position:chr7:14867671-14867421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 11

               
               
               Conread position:36-186
               
               
               Cow position:chr7:33370391-33370549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:36-187
               
               
               Cow position:chr7:2894724-2894884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:36-209
               
               
               Cow position:chr7:36665331-36665501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):57, 14

               
               
               Conread position:37-200
               
               
               Cow position:chr7:56557142-56556975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:37-201
               
               
               Cow position:chr7:23090141-23089975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):13, 58

               
               
               Conread position:37-201
               
               
               Cow position:chr7:26909757-26909590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:37-206
               
               
               Cow position:chr7:58330831-58330652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:38-197
               
               
               Cow position:chr7:50021452-50021290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):55, 24

               
               
               Conread position:38-198
               
               
               Cow position:chr7:48563470-48563309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):21, 68

               
               
               Conread position:38-200
               
               
               Cow position:chr7:18247825-18247658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:38-204
               
               
               Cow position:chr7:6116359-6116189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):52, 19

               
               
               Conread position:38-237
               
               
               Cow position:chr7:3256345-3256137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:39-198
               
               
               Cow position:chr7:36569868-36570032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:39-207
               
               
               Cow position:chr7:11487665-11487496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):54, 23

               
               
               Conread position:40-189
               
               
               Cow position:chr7:41729295-41729143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):37, 17

               
               
               Conread position:40-196
               
               
               Cow position:chr7:63085753-63085916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):24, 10

               
               
               Conread position:40-201
               
               
               Cow position:chr7:9200417-9200250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:40-201
               
               
               Cow position:chr7:14486081-14486243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):13, 87

               
               
               Conread position:43-196
               
               
               Cow position:chr7:35779750-35779909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:45-196
               
               
               Cow position:chr7:35018982-35019137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:45-201
               
               
               Cow position:chr7:10415121-10414962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):46, 19

               
               
               Conread position:45-201
               
               
               Cow position:chr7:57066796-57066636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:45-304
               
               
               Cow position:chr7:39800745-39800503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):59, 34

               
               
               Conread position:45-311
               
               
               Cow position:chr7:39162388-39162654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):49, 28

               
               
               Conread position:46-201
               
               
               Cow position:chr7:26263639-26263477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:46-207
               
               
               Cow position:chr7:43084886-43085052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):17, 82

               
               
               Conread position:46-311
               
               
               Cow position:chr7:11015695-11015947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):40, 157

               
               
               Conread position:50-304
               
               
               Cow position:chr7:29709712-29709467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 109

               
               
               Conread position:50-307
               
               
               Cow position:chr7:9185687-9185935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:51-207
               
               
               Cow position:chr7:39167899-39168059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:52-207
               
               
               Cow position:chr7:63300219-63300374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):39, 57

               
               
               Conread position:57-187
               
               
               Cow position:chr7:11513692-11513558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-198
               
               
               Cow position:chr7:34464383-34464528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):36, 18

               
               
               Conread position:57-200
               
               
               Cow position:chr7:11176705-11176557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:57-201
               
               
               Cow position:chr7:57506760-57506609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:57-201
               
               
               Cow position:chr7:59688570-59688710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-206
               
               
               Cow position:chr7:68540576-68540423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:57-207
               
               
               Cow position:chr7:51685038-51685192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-207
               
               
               Cow position:chr7:58800193-58800345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 86

               
               
               Conread position:57-217
               
               
               Cow position:chr7:37022952-37023113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):36, 149

               
               
               Conread position:57-300
               
               
               Cow position:chr7:8289880-8289654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):33, 22

               
               
               Conread position:57-311
               
               
               Cow position:chr7:38604090-38603846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:59-201
               
               
               Cow position:chr7:53653009-53653155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:61-207
               
               
               Cow position:chr7:17000753-17000904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:61-209
               
               
               Cow position:chr7:68240492-68240644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:62-196
               
               
               Cow position:chr7:11995156-11995022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):26, 49

               
               
               Conread position:62-204
               
               
               Cow position:chr7:40305224-40305078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:62-205
               
               
               Cow position:chr7:1376167-1376310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):31, 58

               
               
               Conread position:62-231
               
               
               Cow position:chr7:43307204-43307375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):31, 119

               
               
               Conread position:62-234
               
               
               Cow position:chr7:40744804-40744977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 13

               
               
               Conread position:63-209
               
               
               Cow position:chr7:65615798-65615946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 133

               
               
               Conread position:64-202
               
               
               Cow position:chr7:32324232-32324373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):24, 137

               
               
               Conread position:65-251
               
               
               Cow position:chr7:17710054-17710241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):28, 148

               
               
               Conread position:70-198
               
               
               Cow position:chr7:40414960-40414828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:73-182
               
               
               Cow position:chr7:16219844-16219733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:73-304
               
               
               Cow position:chr7:5201637-5201384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:76-306
               
               
               Cow position:chr7:23668385-23668154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):11, 172

               
               
               Conread position:77-200
               
               
               Cow position:chr7:31049546-31049421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:78-221
               
               
               Cow position:chr7:40693933-40694076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):23, 127

               
               
               Conread position:79-184
               
               
               Cow position:chr7:21228500-21228394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:79-195
               
               
               Cow position:chr7:17381503-17381621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-198
               
               
               Cow position:chr7:6271331-6271453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-201
               
               
               Cow position:chr7:21573619-21573743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):8, 104

               
               
               Conread position:79-202
               
               
               Cow position:chr7:10795881-10796007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-202
               
               
               Cow position:chr7:30011879-30012003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):8, 104

               
               
               Conread position:79-207
               
               
               Cow position:chr7:15650799-15650668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:80-194
               
               
               Cow position:chr7:11884232-11884116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:80-210
               
               
               Cow position:chr7:6781435-6781573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:80-300
               
               
               Cow position:chr7:56012217-56012421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):31, 135

               
               
               Conread position:82-201
               
               
               Cow position:chr7:10945398-10945519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:82-208
               
               
               Cow position:chr7:34216261-34216387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):28, 93

               
               
               Conread position:82-209
               
               
               Cow position:chr7:43450592-43450719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):5, 111

               
               
               Conread position:82-308
               
               
               Cow position:chr7:35754725-35754952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):5, 23

               
               
               Conread position:83-200
               
               
               Cow position:chr7:11997148-11997267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:83-208
               
               
               Cow position:chr7:30154953-30154827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:85-201
               
               
               Cow position:chr7:40305381-40305264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:86-196
               
               
               Cow position:chr7:3729311-3729421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 108

               
               
               Conread position:86-201
               
               
               Cow position:chr7:11716061-11716177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):24, 42

               
               
               Conread position:86-202
               
               
               Cow position:chr7:8376224-8376340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 14

               
               
               Conread position:86-207
               
               
               Cow position:chr7:27290443-27290321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-207
               
               
               Cow position:chr7:52591942-52591825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):24, 34

               
               
               Conread position:86-209
               
               
               Cow position:chr7:7476057-7475933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:95
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-210
               
               
               Cow position:chr7:6077427-6077302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-236
               
               
               Cow position:chr7:34005017-34005167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):24, 85

               
               
               Conread position:87-198
               
               
               Cow position:chr7:5906691-5906803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:87-208
               
               
               Cow position:chr7:23896392-23896515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:88-201
               
               
               Cow position:chr7:60121611-60121724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):22, 93

               
               
               Conread position:88-214
               
               
               Cow position:chr7:4060323-4060448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):22, 80

               
               
               Conread position:88-311
               
               
               Cow position:chr7:64236203-64235973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:88-312
               
               
               Cow position:chr7:26861380-26861594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):7, 74

               
               
               Conread position:89-194
               
               
               Cow position:chr7:53996359-53996465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:91-304
               
               
               Cow position:chr7:43214371-43214156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):10, 147

               
               
               Conread position:92-207
               
               
               Cow position:chr7:8523718-8523606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):19, 89

               
               
               Conread position:92-304
               
               
               Cow position:chr7:41257968-41257755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):17, 185

               
               
               Conread position:92-313
               
               
               Cow position:chr7:42472144-42472349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:96-198
               
               
               Cow position:chr7:11511790-11511893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):14, 59

               
               
               Conread position:99-198
               
               
               Cow position:chr7:44942626-44942726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:100-304
               
               
               Cow position:chr7:1783147-1782959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):10, 92

               
               
               Conread position:101-299
               
               
               Cow position:chr7:8088826-8088620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:103-204
               
               
               Cow position:chr7:61984012-61984115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:109-209
               
               
               Cow position:chr7:48900641-48900741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:110-234
               
               
               Cow position:chr7:2404295-2404414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:110-312
               
               
               Cow position:chr7:3337694-3337496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):67, 96

               
               
               Conread position:115-312
               
               
               Cow position:chr7:56423434-56423246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):171, 65

               
               
               Conread position:116-311
               
               
               Cow position:chr7:34569242-34569437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):33, 38

               
               
               Conread position:119-308
               
               
               Cow position:chr7:61765675-61765865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):111, 42

               
               
               Conread position:122-296
               
               
               Cow position:chr7:45656830-45656649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):114, 163

               
               
               Conread position:135-308
               
               
               Cow position:chr7:38519972-38519797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):51, 17

               
               
               Conread position:189-311
               
               
               Cow position:chr7:2897267-2897392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:189-311
               
               
               Cow position:chr7:14029426-14029554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:225-311
               
               
               Cow position:chr7:30011990-30012077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:78
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-169
               
               
               Cow position:chr8:6738130-6738305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:1-175
               
               
               Cow position:chr8:37862505-37862686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):18, 50

               
               
               Conread position:1-184
               
               
               Cow position:chr8:42145850-42145653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):18, 120

               
               
               Conread position:1-184
               
               
               Cow position:chr8:60576125-60575935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 48

               
               
               Conread position:1-186
               
               
               Cow position:chr8:18207208-18207017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):20, 101

               
               
               Conread position:1-186
               
               
               Cow position:chr8:54437082-54436887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1-189
               
               
               Cow position:chr8:20339214-20339404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):24, 53

               
               
               Conread position:1-193
               
               
               Cow position:chr8:53558680-53558478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):18, 97

               
               
               Conread position:1-194
               
               
               Cow position:chr8:13221924-13221721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):21, 190

               
               
               Conread position:1-194
               
               
               Cow position:chr8:28884760-28884971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):58, 25

               
               
               Conread position:1-198
               
               
               Cow position:chr8:28313790-28313582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-198
               
               
               Cow position:chr8:43439536-43439749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:1-200
               
               
               Cow position:chr8:36375584-36375375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-201
               
               
               Cow position:chr8:4992485-4992688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):18, 31

               
               
               Conread position:1-201
               
               
               Cow position:chr8:27138867-27138653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-201
               
               
               Cow position:chr8:36249488-36249276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1-201
               
               
               Cow position:chr8:60746573-60746782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):17, 38

               
               
               Conread position:1-204
               
               
               Cow position:chr8:9652602-9652814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):18, 43

               
               
               Conread position:1-204
               
               
               Cow position:chr8:55897883-55897669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr8:13454689-13454477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):57, 37

               
               
               Conread position:1-207
               
               
               Cow position:chr8:17046827-17046615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr8:18831667-18831889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):21, 180

               
               
               Conread position:1-207
               
               
               Cow position:chr8:26284923-26284709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):23, 36

               
               
               Conread position:1-207
               
               
               Cow position:chr8:28321908-28322117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):37, 91

               
               
               Conread position:1-207
               
               
               Cow position:chr8:47412855-47413067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):53, 34

               
               
               Conread position:1-207
               
               
               Cow position:chr8:49305820-49305604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):15, 190

               
               
               Conread position:1-209
               
               
               Cow position:chr8:11606260-11606476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-209
               
               
               Cow position:chr8:16061012-16061217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):18, 44

               
               
               Conread position:1-209
               
               
               Cow position:chr8:41722250-41722047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):54, 42

               
               
               Conread position:1-210
               
               
               Cow position:chr8:19858041-19857822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1-213
               
               
               Cow position:chr8:13374472-13374696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):18, 131

               
               
               Conread position:1-214
               
               
               Cow position:chr8:47284135-47283922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):61, 133

               
               
               Conread position:1-218
               
               
               Cow position:chr8:15391230-15391000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 116

               
               
               Conread position:1-218
               
               
               Cow position:chr8:19698577-19698796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):21, 108

               
               
               Conread position:1-225
               
               
               Cow position:chr8:60485140-60485371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):21, 199

               
               
               Conread position:1-227
               
               
               Cow position:chr8:15569549-15569322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):40, 65

               
               
               Conread position:1-248
               
               
               Cow position:chr8:38681808-38682071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:1-257
               
               
               Cow position:chr8:37334098-37334361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):18, 150

               
               
               Conread position:1-304
               
               
               Cow position:chr8:35504304-35504011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):45, 116

               
               
               Conread position:1-304
               
               
               Cow position:chr8:54147596-54147903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):24, 38

               
               
               Conread position:1-308
               
               
               Cow position:chr8:8987017-8986715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 41

               
               
               Conread position:1-310
               
               
               Cow position:chr8:20102845-20102547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):21, 44

               
               
               Conread position:2-189
               
               
               Cow position:chr8:10337103-10336909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:2-194
               
               
               Cow position:chr8:17247163-17247357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):51, 176

               
               
               Conread position:2-207
               
               
               Cow position:chr8:61067219-61067430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):18, 80

               
               
               Conread position:2-214
               
               
               Cow position:chr8:21911565-21911788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:179
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):17, 202

               
               
               Conread position:3-174
               
               
               Cow position:chr8:56886245-56886424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:3-187
               
               
               Cow position:chr8:38852021-38852216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):45, 21

               
               
               Conread position:3-201
               
               
               Cow position:chr8:61845621-61845410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):45, 191

               
               
               Conread position:3-212
               
               
               Cow position:chr8:12798853-12799071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):38, 10

               
               
               Conread position:3-316
               
               
               Cow position:chr8:24328920-24328625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:241
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):16, 165

               
               
               Conread position:4-304
               
               
               Cow position:chr8:3922778-3922485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):44, 182

               
               
               Conread position:5-156
               
               
               Cow position:chr8:55283738-55283900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-164
               
               
               Cow position:chr8:49687281-49687114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-171
               
               
               Cow position:chr8:17103482-17103316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:5-175
               
               
               Cow position:chr8:10263228-10263050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-177
               
               
               Cow position:chr8:21222133-21222308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):50, 32

               
               
               Conread position:5-178
               
               
               Cow position:chr8:19642409-19642586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):47, 33

               
               
               Conread position:5-184
               
               
               Cow position:chr8:537978-537789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:5-184
               
               
               Cow position:chr8:37709088-37709274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):57, 38

               
               
               Conread position:5-184
               
               
               Cow position:chr8:39845557-39845738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):50, 106

               
               
               Conread position:5-184
               
               
               Cow position:chr8:40143915-40143728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:5-185
               
               
               Cow position:chr8:37571765-37571579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:5-186
               
               
               Cow position:chr8:18017456-18017644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:5-186
               
               
               Cow position:chr8:55360503-55360689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):41, 180

               
               
               Conread position:5-187
               
               
               Cow position:chr8:8097326-8097140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):38, 53

               
               
               Conread position:5-187
               
               
               Cow position:chr8:46874492-46874678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):46, 33

               
               
               Conread position:5-187
               
               
               Cow position:chr8:50310916-50310724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:5-188
               
               
               Cow position:chr8:6232960-6232764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-188
               
               
               Cow position:chr8:25271765-25271957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:5-188
               
               
               Cow position:chr8:32278412-32278221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):45, 33

               
               
               Conread position:5-189
               
               
               Cow position:chr8:13723347-13723535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):54, 153

               
               
               Conread position:5-189
               
               
               Cow position:chr8:18081475-18081662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):49, 25

               
               
               Conread position:5-189
               
               
               Cow position:chr8:47136073-47135888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):50, 37

               
               
               Conread position:5-190
               
               
               Cow position:chr8:3704558-3704751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):42, 170

               
               
               Conread position:5-190
               
               
               Cow position:chr8:54177775-54177586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:5-194
               
               
               Cow position:chr8:38711538-38711726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):25, 45

               
               
               Conread position:5-195
               
               
               Cow position:chr8:29026696-29026506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):84, 169

               
               
               Conread position:5-195
               
               
               Cow position:chr8:48513070-48512878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):88, 51

               
               
               Conread position:5-196
               
               
               Cow position:chr8:2829974-2830172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):49, 33

               
               
               Conread position:5-196
               
               
               Cow position:chr8:11278169-11277966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):41, 188

               
               
               Conread position:5-196
               
               
               Cow position:chr8:15394923-15394726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):45, 167

               
               
               Conread position:5-196
               
               
               Cow position:chr8:17199495-17199297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):38, 167

               
               
               Conread position:5-196
               
               
               Cow position:chr8:25591757-25591950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):54, 103

               
               
               Conread position:5-197
               
               
               Cow position:chr8:18730383-18730586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:5-197
               
               
               Cow position:chr8:19011857-19011656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:5-197
               
               
               Cow position:chr8:42794380-42794185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):88, 57

               
               
               Conread position:5-198
               
               
               Cow position:chr8:7149756-7149563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):54, 86

               
               
               Conread position:5-198
               
               
               Cow position:chr8:22183650-22183854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:5-198
               
               
               Cow position:chr8:28228186-28228383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):50, 33

               
               
               Conread position:5-198
               
               
               Cow position:chr8:53383337-53383541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):49, 27

               
               
               Conread position:5-198
               
               
               Cow position:chr8:53552616-53552813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr8:53633289-53633087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):23, 176

               
               
               Conread position:5-200
               
               
               Cow position:chr8:573217-573015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:5-200
               
               
               Cow position:chr8:4500430-4500635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):54, 177

               
               
               Conread position:5-201
               
               
               Cow position:chr8:5893881-5894080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):46, 152

               
               
               Conread position:5-201
               
               
               Cow position:chr8:23586016-23585819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):44, 94

               
               
               Conread position:5-201
               
               
               Cow position:chr8:30324253-30324463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):41, 177

               
               
               Conread position:5-201
               
               
               Cow position:chr8:48528026-48527821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:5-201
               
               
               Cow position:chr8:60126791-60126990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:5-204
               
               
               Cow position:chr8:17180093-17179891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:5-204
               
               
               Cow position:chr8:20107846-20107647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):96, 33

               
               
               Conread position:5-204
               
               
               Cow position:chr8:33125441-33125641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):104, 51

               
               
               Conread position:5-206
               
               
               Cow position:chr8:3891491-3891281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 14

               
               
               Conread position:5-206
               
               
               Cow position:chr8:29765195-29765411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-206
               
               
               Cow position:chr8:37167680-37167889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:5-207
               
               
               Cow position:chr8:522493-522281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr8:935646-935852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):50, 33

               
               
               Conread position:5-207
               
               
               Cow position:chr8:8323932-8323723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr8:11612486-11612697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-207
               
               
               Cow position:chr8:12058660-12058869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):47, 124

               
               
               Conread position:5-207
               
               
               Cow position:chr8:16413871-16413666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):49, 32

               
               
               Conread position:5-207
               
               
               Cow position:chr8:24513207-24513000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):33, 72

               
               
               Conread position:5-207
               
               
               Cow position:chr8:27730976-27731184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:5-207
               
               
               Cow position:chr8:31297205-31297417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):33, 62

               
               
               Conread position:5-208
               
               
               Cow position:chr8:34774436-34774640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):62, 41

               
               
               Conread position:5-208
               
               
               Cow position:chr8:37636055-37635845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:5-209
               
               
               Cow position:chr8:36671853-36672068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-209
               
               
               Cow position:chr8:40032875-40032670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:5-212
               
               
               Cow position:chr8:40579474-40579263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):47, 180

               
               
               Conread position:5-213
               
               
               Cow position:chr8:45287351-45287146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):33, 57

               
               
               Conread position:5-215
               
               
               Cow position:chr8:1394166-1394388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):43, 214

               
               
               Conread position:5-215
               
               
               Cow position:chr8:20926702-20926476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-221
               
               
               Cow position:chr8:34171814-34172030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:5-222
               
               
               Cow position:chr8:6616854-6616629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-223
               
               
               Cow position:chr8:24237016-24237240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):57, 32

               
               
               Conread position:5-223
               
               
               Cow position:chr8:57208538-57208316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 111

               
               
               Conread position:5-242
               
               
               Cow position:chr8:18728723-18728968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):37, 81

               
               
               Conread position:5-299
               
               
               Cow position:chr8:37882284-37882570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):50, 41

               
               
               Conread position:5-304
               
               
               Cow position:chr8:34478057-34478341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):234, 56

               
               
               Conread position:5-307
               
               
               Cow position:chr8:21077525-21077823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:220
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):48, 185

               
               
               Conread position:5-307
               
               
               Cow position:chr8:25388080-25388367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 178

               
               
               Conread position:5-309
               
               
               Cow position:chr8:23179606-23179316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):45, 106

               
               
               Conread position:5-309
               
               
               Cow position:chr8:47169880-47170187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):50, 178

               
               
               Conread position:5-310
               
               
               Cow position:chr8:20837063-20837368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 102

               
               
               Conread position:5-312
               
               
               Cow position:chr8:1472995-1473299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):34, 119

               
               
               Conread position:5-312
               
               
               Cow position:chr8:2814561-2814872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):46, 33

               
               
               Conread position:5-312
               
               
               Cow position:chr8:48955878-48956210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):41, 154

               
               
               Conread position:6-171
               
               
               Cow position:chr8:51694877-51694703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 64

               
               
               Conread position:6-201
               
               
               Cow position:chr8:13321683-13321494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 119

               
               
               Conread position:6-207
               
               
               Cow position:chr8:55901088-55900881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):42, 107

               
               
               Conread position:6-209
               
               
               Cow position:chr8:58417626-58417831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):51, 37

               
               
               Conread position:6-213
               
               
               Cow position:chr8:21600386-21600599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:6-229
               
               
               Cow position:chr8:37215381-37215599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 32

               
               
               Conread position:6-301
               
               
               Cow position:chr8:21382754-21382450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 287

               
               
               Conread position:6-308
               
               
               Cow position:chr8:38596287-38595972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):41, 95

               
               
               Conread position:6-311
               
               
               Cow position:chr8:5225100-5224802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):44, 100

               
               
               Conread position:6-314
               
               
               Cow position:chr8:39174307-39173985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:7-198
               
               
               Cow position:chr8:25133514-25133711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:7-200
               
               
               Cow position:chr8:43163764-43163562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:7-206
               
               
               Cow position:chr8:1666137-1665929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):21, 46

               
               
               Conread position:7-214
               
               
               Cow position:chr8:29958342-29958552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):41, 93

               
               
               Conread position:7-223
               
               
               Cow position:chr8:24471590-24471819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):41, 175

               
               
               Conread position:7-304
               
               
               Cow position:chr8:26304449-26304155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:7-311
               
               
               Cow position:chr8:33974497-33974797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):42, 31

               
               
               Conread position:8-201
               
               
               Cow position:chr8:37347517-37347315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):42, 192

               
               
               Conread position:8-207
               
               
               Cow position:chr8:52197518-52197312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):40, 153

               
               
               Conread position:8-268
               
               
               Cow position:chr8:34042393-34042660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):47, 179

               
               
               Conread position:9-201
               
               
               Cow position:chr8:41219265-41219469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:9-296
               
               
               Cow position:chr8:3673310-3673591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):13, 102

               
               
               Conread position:11-198
               
               
               Cow position:chr8:55089909-55089711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:12-189
               
               
               Cow position:chr8:1011923-1012106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):10, 177

               
               
               Conread position:12-190
               
               
               Cow position:chr8:46743370-46743186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):38, 87

               
               
               Conread position:12-198
               
               
               Cow position:chr8:4525027-4525219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):10, 44

               
               
               Conread position:12-303
               
               
               Cow position:chr8:45127758-45127440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:12-311
               
               
               Cow position:chr8:18171075-18170782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):10, 28

               
               
               Conread position:13-209
               
               
               Cow position:chr8:46235645-46235844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):9, 52

               
               
               Conread position:15-188
               
               
               Cow position:chr8:1620783-1620598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:15-196
               
               
               Cow position:chr8:580130-579945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):48, 23

               
               
               Conread position:15-207
               
               
               Cow position:chr8:6910214-6910015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:15-207
               
               
               Cow position:chr8:20105923-20105727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):48, 22

               
               
               Conread position:17-201
               
               
               Cow position:chr8:1023915-1024098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):29, 91

               
               
               Conread position:17-201
               
               
               Cow position:chr8:6193920-6194118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:17-201
               
               
               Cow position:chr8:26008829-26009022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 18

               
               
               Conread position:17-202
               
               
               Cow position:chr8:40888249-40888062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):35, 168

               
               
               Conread position:17-207
               
               
               Cow position:chr8:45859758-45859955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:18-198
               
               
               Cow position:chr8:11863902-11864088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:19-187
               
               
               Cow position:chr8:43168079-43167901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:19-192
               
               
               Cow position:chr8:2163950-2163774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):31, 9

               
               
               Conread position:19-207
               
               
               Cow position:chr8:19475133-19474936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:19-223
               
               
               Cow position:chr8:12795775-12795987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:168
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):40, 24

               
               
               Conread position:20-179
               
               
               Cow position:chr8:4552799-4552629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-179
               
               
               Cow position:chr8:40930262-40930421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):71, 23

               
               
               Conread position:20-183
               
               
               Cow position:chr8:58520245-58520417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:20-184
               
               
               Cow position:chr8:9051081-9050916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):59, 110

               
               
               Conread position:20-186
               
               
               Cow position:chr8:39592540-39592714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:20-187
               
               
               Cow position:chr8:16505446-16505618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:20-187
               
               
               Cow position:chr8:25751919-25751747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):29, 96

               
               
               Conread position:20-187
               
               
               Cow position:chr8:61669268-61669443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:20-188
               
               
               Cow position:chr8:53429727-53429905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:20-188
               
               
               Cow position:chr8:61128743-61128568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:20-195
               
               
               Cow position:chr8:19860706-19860534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):29, 75

               
               
               Conread position:20-195
               
               
               Cow position:chr8:26625825-26626003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):73, 44

               
               
               Conread position:20-195
               
               
               Cow position:chr8:54031827-54032014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-196
               
               
               Cow position:chr8:44699934-44700113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):18, 39

               
               
               Conread position:20-196
               
               
               Cow position:chr8:52968355-52968174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:20-196
               
               
               Cow position:chr8:61443263-61443079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:20-198
               
               
               Cow position:chr8:49656473-49656293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):39, 22

               
               
               Conread position:20-200
               
               
               Cow position:chr8:4940356-4940179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):39, 12

               
               
               Conread position:20-200
               
               
               Cow position:chr8:57218758-57218939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):27, 88

               
               
               Conread position:20-201
               
               
               Cow position:chr8:39487683-39487497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):48, 18

               
               
               Conread position:20-201
               
               
               Cow position:chr8:54328398-54328593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:20-204
               
               
               Cow position:chr8:21212756-21212933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):120, 23

               
               
               Conread position:20-204
               
               
               Cow position:chr8:25455360-25455549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:20-205
               
               
               Cow position:chr8:3446145-3445949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:20-205
               
               
               Cow position:chr8:55974863-55974670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:20-206
               
               
               Cow position:chr8:15426705-15426889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):73, 25

               
               
               Conread position:20-207
               
               
               Cow position:chr8:2968542-2968723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):43, 77

               
               
               Conread position:20-207
               
               
               Cow position:chr8:37298426-37298622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:20-207
               
               
               Cow position:chr8:38478887-38479085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-207
               
               
               Cow position:chr8:55095832-55096016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):29, 106

               
               
               Conread position:20-209
               
               
               Cow position:chr8:49659083-49659274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:20-220
               
               
               Cow position:chr8:20157812-20157600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:20-222
               
               
               Cow position:chr8:50335570-50335359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):30, 90

               
               
               Conread position:20-223
               
               
               Cow position:chr8:39969870-39969658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):19, 51

               
               
               Conread position:20-223
               
               
               Cow position:chr8:47664952-47664743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):28, 7

               
               
               Conread position:20-230
               
               
               Cow position:chr8:36729627-36729831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:20-277
               
               
               Cow position:chr8:7661311-7661576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):31, 203

               
               
               Conread position:20-299
               
               
               Cow position:chr8:18647409-18647111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):28, 92

               
               
               Conread position:20-301
               
               
               Cow position:chr8:47461822-47462086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:217
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):66, 23

               
               
               Conread position:20-308
               
               
               Cow position:chr8:38780662-38780935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):26, 42

               
               
               Conread position:20-309
               
               
               Cow position:chr8:15219111-15219395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):44, 17

               
               
               Conread position:21-178
               
               
               Cow position:chr8:669610-669447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):25, 47

               
               
               Conread position:21-186
               
               
               Cow position:chr8:55454624-55454791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):72, 147

               
               
               Conread position:21-198
               
               
               Cow position:chr8:20783310-20783126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:21-207
               
               
               Cow position:chr8:43942685-43942874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):38, 17

               
               
               Conread position:22-200
               
               
               Cow position:chr8:37559085-37559271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 136

               
               
               Conread position:22-204
               
               
               Cow position:chr8:1187874-1188060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):30, 126

               
               
               Conread position:23-184
               
               
               Cow position:chr8:45245076-45244905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:23-201
               
               
               Cow position:chr8:53606563-53606380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 15

               
               
               Conread position:24-207
               
               
               Cow position:chr8:1297468-1297657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:24-207
               
               
               Cow position:chr8:16144085-16144277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:24-207
               
               
               Cow position:chr8:22575933-22575746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):31, 19

               
               
               Conread position:25-198
               
               
               Cow position:chr8:36718523-36718697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):68, 32

               
               
               Conread position:25-201
               
               
               Cow position:chr8:31265946-31265769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):28, 81

               
               
               Conread position:25-204
               
               
               Cow position:chr8:58598596-58598784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:26-309
               
               
               Cow position:chr8:10765033-10764736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 268

               
               
               Conread position:30-198
               
               
               Cow position:chr8:33805487-33805661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):8, 43

               
               
               Conread position:32-212
               
               
               Cow position:chr8:53251739-53251552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):31, 162

               
               
               Conread position:33-196
               
               
               Cow position:chr8:37275727-37275893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):22, 98

               
               
               Conread position:35-194
               
               
               Cow position:chr8:45879006-45879168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):18, 79

               
               
               Conread position:35-204
               
               
               Cow position:chr8:45925588-45925758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):18, 79

               
               
               Conread position:35-205
               
               
               Cow position:chr8:46964706-46964882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:36-207
               
               
               Cow position:chr8:39590208-39590381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):52, 22

               
               
               Conread position:36-208
               
               
               Cow position:chr8:26608239-26608418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):15, 107

               
               
               Conread position:37-196
               
               
               Cow position:chr8:4648506-4648340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:37-201
               
               
               Cow position:chr8:35580661-35580494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 25

               
               
               Conread position:38-182
               
               
               Cow position:chr8:3795800-3795946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):55, 91

               
               
               Conread position:38-198
               
               
               Cow position:chr8:39782571-39782734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):55, 19

               
               
               Conread position:38-201
               
               
               Cow position:chr8:17167544-17167711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):7, 25

               
               
               Conread position:38-201
               
               
               Cow position:chr8:43104319-43104153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):37, 19

               
               
               Conread position:38-204
               
               
               Cow position:chr8:5477875-5477707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):52, 15

               
               
               Conread position:40-201
               
               
               Cow position:chr8:1999606-1999770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):49, 17

               
               
               Conread position:40-207
               
               
               Cow position:chr8:1303885-1304050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:41-198
               
               
               Cow position:chr8:55348314-55348471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):52, 71

               
               
               Conread position:41-212
               
               
               Cow position:chr8:60478652-60478484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):52, 60

               
               
               Conread position:42-207
               
               
               Cow position:chr8:20409667-20409833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):44, 15

               
               
               Conread position:44-201
               
               
               Cow position:chr8:61556974-61556813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:44-207
               
               
               Cow position:chr8:20327870-20327708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):46, 99

               
               
               Conread position:45-187
               
               
               Cow position:chr8:38860542-38860688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:45-204
               
               
               Cow position:chr8:55853317-55853477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):56, 79

               
               
               Conread position:45-207
               
               
               Cow position:chr8:28209964-28210126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):48, 12

               
               
               Conread position:46-182
               
               
               Cow position:chr8:6248892-6248755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:46-189
               
               
               Cow position:chr8:32192673-32192819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:46-189
               
               
               Cow position:chr8:48086623-48086477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):39, 27

               
               
               Conread position:46-207
               
               
               Cow position:chr8:20582705-20582541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 11

               
               
               Conread position:46-207
               
               
               Cow position:chr8:51511872-51511710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):13, 76

               
               
               Conread position:46-209
               
               
               Cow position:chr8:53965495-53965328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:46-223
               
               
               Cow position:chr8:45126252-45126071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:46-311
               
               
               Cow position:chr8:32198157-32197895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 18

               
               
               Conread position:47-201
               
               
               Cow position:chr8:27661845-27662002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:47-213
               
               
               Cow position:chr8:32303910-32304081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:47-220
               
               
               Cow position:chr8:51208764-51208943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:47-247
               
               
               Cow position:chr8:51162555-51162349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):16, 198

               
               
               Conread position:47-304
               
               
               Cow position:chr8:43153706-43153463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):46, 15

               
               
               Conread position:48-304
               
               
               Cow position:chr8:20282829-20283085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):39, 144

               
               
               Conread position:50-204
               
               
               Cow position:chr8:34035657-34035820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):32, 99

               
               
               Conread position:50-209
               
               
               Cow position:chr8:40696864-40697023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 55

               
               
               Conread position:50-311
               
               
               Cow position:chr8:53642448-53642178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):43, 125

               
               
               Conread position:50-312
               
               
               Cow position:chr8:9468332-9468586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 112

               
               
               Conread position:51-207
               
               
               Cow position:chr8:38811290-38811449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:53-207
               
               
               Cow position:chr8:3762138-3762295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 19

               
               
               Conread position:53-220
               
               
               Cow position:chr8:5884702-5884533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 142

               
               
               Conread position:56-188
               
               
               Cow position:chr8:24406649-24406514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 102

               
               
               Conread position:57-179
               
               
               Cow position:chr8:3593652-3593778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:57-187
               
               
               Cow position:chr8:44568794-44568929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:57-194
               
               
               Cow position:chr8:19784855-19784993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):36, 48

               
               
               Conread position:57-198
               
               
               Cow position:chr8:35497687-35497545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):53, 36

               
               
               Conread position:57-201
               
               
               Cow position:chr8:33926145-33926299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):22, 131

               
               
               Conread position:57-204
               
               
               Cow position:chr8:32457781-32457935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):31, 93

               
               
               Conread position:57-207
               
               
               Cow position:chr8:34402288-34402442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-212
               
               
               Cow position:chr8:28378774-28378615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:57-222
               
               
               Cow position:chr8:56181520-56181359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):36, 48

               
               
               Conread position:57-239
               
               
               Cow position:chr8:31762533-31762716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):34, 48

               
               
               Conread position:57-241
               
               
               Cow position:chr8:1114816-1114633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):36, 48

               
               
               Conread position:59-196
               
               
               Cow position:chr8:676321-676179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:59-204
               
               
               Cow position:chr8:53492329-53492474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):30, 88

               
               
               Conread position:61-213
               
               
               Cow position:chr8:21069977-21069822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:61-228
               
               
               Cow position:chr8:26600766-26600932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):88, 32

               
               
               Conread position:61-303
               
               
               Cow position:chr8:31167108-31166883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):32, 137

               
               
               Conread position:62-184
               
               
               Cow position:chr8:10846237-10846363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:62-212
               
               
               Cow position:chr8:61738333-61738486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 109

               
               
               Conread position:62-213
               
               
               Cow position:chr8:42112827-42112673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):31, 116

               
               
               Conread position:62-233
               
               
               Cow position:chr8:50709052-50709230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:62-288
               
               
               Cow position:chr8:36489867-36490088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:179
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):31, 133

               
               
               Conread position:62-309
               
               
               Cow position:chr8:58876067-58876308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):31, 118

               
               
               Conread position:64-200
               
               
               Cow position:chr8:37443532-37443669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):23, 68

               
               
               Conread position:64-212
               
               
               Cow position:chr8:21611377-21611535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:68-189
               
               
               Cow position:chr8:54306367-54306483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:68-309
               
               
               Cow position:chr8:11148633-11148395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:71-209
               
               
               Cow position:chr8:5672143-5672008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):39, 15

               
               
               Conread position:72-212
               
               
               Cow position:chr8:35555315-35555172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:75-179
               
               
               Cow position:chr8:5484562-5484454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:75-207
               
               
               Cow position:chr8:50281888-50282023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:78-195
               
               
               Cow position:chr8:24419261-24419142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:79-201
               
               
               Cow position:chr8:15238393-15238269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-207
               
               
               Cow position:chr8:42378880-42378752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):8, 103

               
               
               Conread position:79-207
               
               
               Cow position:chr8:47057649-47057519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):14, 105

               
               
               Conread position:79-207
               
               
               Cow position:chr8:55725751-55725622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):8, 43

               
               
               Conread position:79-209
               
               
               Cow position:chr8:37173043-37172913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):32, 7

               
               
               Conread position:79-218
               
               
               Cow position:chr8:54546608-54546750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-275
               
               
               Cow position:chr8:14109407-14109619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:82-197
               
               
               Cow position:chr8:24767387-24767274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):5, 27

               
               
               Conread position:82-201
               
               
               Cow position:chr8:5665674-5665550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:83-207
               
               
               Cow position:chr8:45167608-45167486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:84-207
               
               
               Cow position:chr8:24363614-24363492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 11

               
               
               Conread position:84-217
               
               
               Cow position:chr8:21961463-21961596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:85-216
               
               
               Cow position:chr8:60594878-60595009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):25, 96

               
               
               Conread position:86-201
               
               
               Cow position:chr8:7351117-7351232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):24, 72

               
               
               Conread position:86-207
               
               
               Cow position:chr8:11003775-11003653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:86-215
               
               
               Cow position:chr8:8283275-8283147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):24, 118

               
               
               Conread position:86-223
               
               
               Cow position:chr8:43985896-43985759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 90

               
               
               Conread position:86-310
               
               
               Cow position:chr8:47969255-47969047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):22, 114

               
               
               Conread position:87-209
               
               
               Cow position:chr8:20897371-20897492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):24, 105

               
               
               Conread position:87-223
               
               
               Cow position:chr8:5546164-5546300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 112

               
               
               Conread position:88-198
               
               
               Cow position:chr8:36034941-36034829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:88-208
               
               
               Cow position:chr8:38993760-38993880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):22, 50

               
               
               Conread position:88-291
               
               
               Cow position:chr8:47221563-47221360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):22, 83

               
               
               Conread position:88-304
               
               
               Cow position:chr8:55502810-55503041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 54

               
               
               Conread position:88-311
               
               
               Cow position:chr8:28987726-28987941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):22, 100

               
               
               Conread position:89-195
               
               
               Cow position:chr8:21775949-21776056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:89-223
               
               
               Cow position:chr8:3312649-3312514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):21, 93

               
               
               Conread position:92-189
               
               
               Cow position:chr8:45149760-45149663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:83
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:92-194
               
               
               Cow position:chr8:19775040-19775142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:94-201
               
               
               Cow position:chr8:39968248-39968141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:95-204
               
               
               Cow position:chr8:31768000-31767891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:96-306
               
               
               Cow position:chr8:38801205-38801404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):15, 59

               
               
               Conread position:100-223
               
               
               Cow position:chr8:53485945-53486067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):13, 82

               
               
               Conread position:109-309
               
               
               Cow position:chr8:58387704-58387495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):18, 175

               
               
               Conread position:110-205
               
               
               Cow position:chr8:31902636-31902541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:80
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:110-308
               
               
               Cow position:chr8:19997975-19997779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):97, 81

               
               
               Conread position:119-304
               
               
               Cow position:chr8:46190999-46190821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:121-292
               
               
               Cow position:chr8:43017-43180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):118, 66

               
               
               Conread position:128-312
               
               
               Cow position:chr8:37581815-37581633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:140-308
               
               
               Cow position:chr8:33958731-33958900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):101, 29

               
               
               Conread position:160-308
               
               
               Cow position:chr8:21721888-21722037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:164-310
               
               
               Cow position:chr8:20410939-20410787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):28, 95

               
               
               Conread position:187-312
               
               
               Cow position:chr8:48010479-48010353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:1-165
               
               
               Cow position:chr9:49709951-49709782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):20, 115

               
               
               Conread position:1-188
               
               
               Cow position:chr9:13846029-13846215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 38

               
               
               Conread position:1-188
               
               
               Cow position:chr9:19714188-19713992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1-188
               
               
               Cow position:chr9:40542232-40542048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):18, 48

               
               
               Conread position:1-189
               
               
               Cow position:chr9:51566381-51566584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-189
               
               
               Cow position:chr9:51720795-51720986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):21, 53

               
               
               Conread position:1-189
               
               
               Cow position:chr9:56032213-56032405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):78, 56

               
               
               Conread position:1-190
               
               
               Cow position:chr9:34468470-34468668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 187

               
               
               Conread position:1-192
               
               
               Cow position:chr9:5756889-5757083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):92, 32

               
               
               Conread position:1-192
               
               
               Cow position:chr9:62459474-62459275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):48, 34

               
               
               Conread position:1-195
               
               
               Cow position:chr9:22318458-22318257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):21, 158

               
               
               Conread position:1-195
               
               
               Cow position:chr9:42478375-42478577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:160
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:1-195
               
               
               Cow position:chr9:55287784-55287985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-196
               
               
               Cow position:chr9:60110355-60110154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):48, 24

               
               
               Conread position:1-197
               
               
               Cow position:chr9:8534583-8534793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):54, 42

               
               
               Conread position:1-197
               
               
               Cow position:chr9:20579492-20579692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 80

               
               
               Conread position:1-201
               
               
               Cow position:chr9:6189264-6189466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):18, 39

               
               
               Conread position:1-201
               
               
               Cow position:chr9:28726613-28726831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-201
               
               
               Cow position:chr9:30124028-30123828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):20, 91

               
               
               Conread position:1-201
               
               
               Cow position:chr9:50139392-50139184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:1-201
               
               
               Cow position:chr9:64064247-64064464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:1-202
               
               
               Cow position:chr9:29339217-29339416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):49, 34

               
               
               Conread position:1-207
               
               
               Cow position:chr9:34374822-34375031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 60

               
               
               Conread position:1-207
               
               
               Cow position:chr9:36410250-36410454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 107

               
               
               Conread position:1-207
               
               
               Cow position:chr9:38624519-38624731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr9:50310666-50310867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):87, 44

               
               
               Conread position:1-207
               
               
               Cow position:chr9:50977134-50977360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):18, 32

               
               
               Conread position:1-209
               
               
               Cow position:chr9:26086169-26085949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):50, 102

               
               
               Conread position:1-212
               
               
               Cow position:chr9:39011363-39011581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 14

               
               
               Conread position:1-214
               
               
               Cow position:chr9:47590871-47591093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 200

               
               
               Conread position:1-214
               
               
               Cow position:chr9:55118193-55117977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):20, 99

               
               
               Conread position:1-223
               
               
               Cow position:chr9:54528619-54528388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):21, 44

               
               
               Conread position:1-226
               
               
               Cow position:chr9:11303968-11304199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):18, 112

               
               
               Conread position:1-268
               
               
               Cow position:chr9:5509835-5509562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):18, 40

               
               
               Conread position:1-301
               
               
               Cow position:chr9:35105676-35106000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):18, 281

               
               
               Conread position:1-303
               
               
               Cow position:chr9:62668359-62668048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):45, 177

               
               
               Conread position:1-304
               
               
               Cow position:chr9:63194712-63194413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):47, 208

               
               
               Conread position:1-311
               
               
               Cow position:chr9:64050453-64050781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:2-184
               
               
               Cow position:chr9:62656910-62656719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):23, 67

               
               
               Conread position:2-196
               
               
               Cow position:chr9:5594606-5594406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:2-201
               
               
               Cow position:chr9:56065663-56065464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 96

               
               
               Conread position:2-248
               
               
               Cow position:chr9:56011605-56011354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):16, 186

               
               
               Conread position:3-198
               
               
               Cow position:chr9:56453440-56453242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):9, 167

               
               
               Conread position:3-201
               
               
               Cow position:chr9:37017001-37016797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 99

               
               
               Conread position:3-219
               
               
               Cow position:chr9:43443905-43443683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:3-294
               
               
               Cow position:chr9:54716501-54716777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):19, 95

               
               
               Conread position:3-311
               
               
               Cow position:chr9:59386662-59386988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 290

               
               
               Conread position:4-308
               
               
               Cow position:chr9:52001107-52000822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):80, 37

               
               
               Conread position:4-310
               
               
               Cow position:chr9:1973044-1972717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:235
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):49, 107

               
               
               Conread position:5-166
               
               
               Cow position:chr9:1950021-1949851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-172
               
               
               Cow position:chr9:20091149-20090974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:5-173
               
               
               Cow position:chr9:49417088-49416914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):54, 45

               
               
               Conread position:5-174
               
               
               Cow position:chr9:41679847-41679673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):60, 37

               
               
               Conread position:5-175
               
               
               Cow position:chr9:19493361-19493541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:5-176
               
               
               Cow position:chr9:6879874-6879703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):47, 38

               
               
               Conread position:5-176
               
               
               Cow position:chr9:60027303-60027121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:5-179
               
               
               Cow position:chr9:15225197-15225375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):40, 53

               
               
               Conread position:5-179
               
               
               Cow position:chr9:23955882-23956059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):88, 57

               
               
               Conread position:5-183
               
               
               Cow position:chr9:5433739-5433549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr9:55321743-55321553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):16, 12

               
               
               Conread position:5-187
               
               
               Cow position:chr9:9753292-9753477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):46, 32

               
               
               Conread position:5-187
               
               
               Cow position:chr9:10819731-10819915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):54, 37

               
               
               Conread position:5-187
               
               
               Cow position:chr9:55075032-55075215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):41, 54

               
               
               Conread position:5-188
               
               
               Cow position:chr9:12281075-12280882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-188
               
               
               Cow position:chr9:14796676-14796858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):17, 10

               
               
               Conread position:5-188
               
               
               Cow position:chr9:61303105-61302912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr9:29185031-29185226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-189
               
               
               Cow position:chr9:63745912-63745726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):54, 102

               
               
               Conread position:5-192
               
               
               Cow position:chr9:32732587-32732771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 80

               
               
               Conread position:5-193
               
               
               Cow position:chr9:5245963-5245760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-193
               
               
               Cow position:chr9:41394547-41394740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):37, 59

               
               
               Conread position:5-195
               
               
               Cow position:chr9:6840103-6839899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 190

               
               
               Conread position:5-195
               
               
               Cow position:chr9:9552194-9551996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):45, 178

               
               
               Conread position:5-195
               
               
               Cow position:chr9:10650200-10650394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):54, 37

               
               
               Conread position:5-196
               
               
               Cow position:chr9:5327357-5327162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:5-196
               
               
               Cow position:chr9:22443526-22443722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):39, 181

               
               
               Conread position:5-196
               
               
               Cow position:chr9:45141500-45141696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-197
               
               
               Cow position:chr9:26279070-26279266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):58, 32

               
               
               Conread position:5-197
               
               
               Cow position:chr9:40215343-40215149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 107

               
               
               Conread position:5-197
               
               
               Cow position:chr9:52598622-52598818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):47, 38

               
               
               Conread position:5-198
               
               
               Cow position:chr9:9311962-9311760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):16, 12

               
               
               Conread position:5-198
               
               
               Cow position:chr9:11168831-11168633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):41, 180

               
               
               Conread position:5-198
               
               
               Cow position:chr9:34286904-34286701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr9:38645241-38645442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):45, 73

               
               
               Conread position:5-198
               
               
               Cow position:chr9:41283115-41282917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:5-198
               
               
               Cow position:chr9:51620539-51620348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 49

               
               
               Conread position:5-201
               
               
               Cow position:chr9:1751439-1751236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):58, 38

               
               
               Conread position:5-201
               
               
               Cow position:chr9:26057340-26057532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):45, 67

               
               
               Conread position:5-201
               
               
               Cow position:chr9:28747421-28747620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):38, 58

               
               
               Conread position:5-201
               
               
               Cow position:chr9:31359702-31359503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):48, 32

               
               
               Conread position:5-201
               
               
               Cow position:chr9:34902007-34902201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 84

               
               
               Conread position:5-201
               
               
               Cow position:chr9:35547373-35547167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr9:64559783-64559983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:5-204
               
               
               Cow position:chr9:3186229-3186022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:5-204
               
               
               Cow position:chr9:8998458-8998245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-206
               
               
               Cow position:chr9:33411475-33411677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 41

               
               
               Conread position:5-207
               
               
               Cow position:chr9:9723782-9723983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:5-207
               
               
               Cow position:chr9:10010903-10010708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):88, 46

               
               
               Conread position:5-207
               
               
               Cow position:chr9:27279410-27279202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):58, 32

               
               
               Conread position:5-207
               
               
               Cow position:chr9:52511216-52511011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 33

               
               
               Conread position:5-207
               
               
               Cow position:chr9:52754755-52754956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):46, 33

               
               
               Conread position:5-207
               
               
               Cow position:chr9:53139031-53139239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 33

               
               
               Conread position:5-208
               
               
               Cow position:chr9:6397680-6397891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):45, 191

               
               
               Conread position:5-208
               
               
               Cow position:chr9:11123381-11123591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):46, 129

               
               
               Conread position:5-208
               
               
               Cow position:chr9:18827953-18828160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):58, 32

               
               
               Conread position:5-209
               
               
               Cow position:chr9:12225876-12226089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):54, 153

               
               
               Conread position:5-209
               
               
               Cow position:chr9:33598082-33597877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):88, 45

               
               
               Conread position:5-209
               
               
               Cow position:chr9:38941330-38941541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-212
               
               
               Cow position:chr9:33114448-33114234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):50, 27

               
               
               Conread position:5-213
               
               
               Cow position:chr9:21888268-21888058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):54, 45

               
               
               Conread position:5-213
               
               
               Cow position:chr9:38846242-38846445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):86, 37

               
               
               Conread position:5-214
               
               
               Cow position:chr9:9443502-9443716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):58, 38

               
               
               Conread position:5-215
               
               
               Cow position:chr9:40005577-40005364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):38, 180

               
               
               Conread position:5-215
               
               
               Cow position:chr9:55889912-55889700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):59, 38

               
               
               Conread position:5-220
               
               
               Cow position:chr9:23265095-23264874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 119

               
               
               Conread position:5-223
               
               
               Cow position:chr9:11313410-11313639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-223
               
               
               Cow position:chr9:32981970-32982198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 30

               
               
               Conread position:5-223
               
               
               Cow position:chr9:50543321-50543546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):43, 177

               
               
               Conread position:5-237
               
               
               Cow position:chr9:17310461-17310696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):47, 112

               
               
               Conread position:5-237
               
               
               Cow position:chr9:17411090-17411330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-237
               
               
               Cow position:chr9:28379071-28378831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):11, 48

               
               
               Conread position:5-239
               
               
               Cow position:chr9:33697131-33696892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 134

               
               
               Conread position:5-253
               
               
               Cow position:chr9:32676781-32676530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):12, 40

               
               
               Conread position:5-259
               
               
               Cow position:chr9:55532916-55532653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):42, 12

               
               
               Conread position:5-268
               
               
               Cow position:chr9:1520636-1520898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):43, 171

               
               
               Conread position:5-289
               
               
               Cow position:chr9:3774262-3773956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):41, 109

               
               
               Conread position:5-304
               
               
               Cow position:chr9:22696322-22696004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):58, 21

               
               
               Conread position:5-304
               
               
               Cow position:chr9:55084196-55084504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 135

               
               
               Conread position:5-307
               
               
               Cow position:chr9:5763530-5763831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):37, 165

               
               
               Conread position:5-308
               
               
               Cow position:chr9:4267882-4268177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):42, 22

               
               
               Conread position:5-309
               
               
               Cow position:chr9:46664923-46664619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 38

               
               
               Conread position:5-310
               
               
               Cow position:chr9:7363126-7362827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):44, 91

               
               
               Conread position:5-311
               
               
               Cow position:chr9:44467251-44467547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 12

               
               
               Conread position:5-315
               
               
               Cow position:chr9:52839785-52840080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:6-187
               
               
               Cow position:chr9:29684248-29684058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):44, 178

               
               
               Conread position:6-188
               
               
               Cow position:chr9:9460076-9459896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):53, 32

               
               
               Conread position:6-188
               
               
               Cow position:chr9:43871079-43870887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:6-201
               
               
               Cow position:chr9:24887300-24887103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):71, 39

               
               
               Conread position:6-202
               
               
               Cow position:chr9:1867552-1867352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):16, 77

               
               
               Conread position:6-206
               
               
               Cow position:chr9:6933973-6934179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:7-189
               
               
               Cow position:chr9:8338128-8337938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:7-189
               
               
               Cow position:chr9:45756466-45756275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):33, 181

               
               
               Conread position:7-189
               
               
               Cow position:chr9:54681606-54681422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):39, 167

               
               
               Conread position:7-207
               
               
               Cow position:chr9:18426016-18425805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 16

               
               
               Conread position:7-209
               
               
               Cow position:chr9:42445880-42446091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):48, 183

               
               
               Conread position:7-230
               
               
               Cow position:chr9:50080947-50081170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):86, 37

               
               
               Conread position:12-204
               
               
               Cow position:chr9:13670733-13670529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:13-184
               
               
               Cow position:chr9:4580312-4580488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):13, 34

               
               
               Conread position:13-189
               
               
               Cow position:chr9:3343842-3343660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:13-201
               
               
               Cow position:chr9:5649880-5650073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):33, 13

               
               
               Conread position:13-204
               
               
               Cow position:chr9:40507507-40507701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:13-206
               
               
               Cow position:chr9:9686319-9686518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 54

               
               
               Conread position:13-209
               
               
               Cow position:chr9:21460057-21460258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):29, 105

               
               
               Conread position:13-217
               
               
               Cow position:chr9:35167269-35167061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):37, 184

               
               
               Conread position:13-301
               
               
               Cow position:chr9:52513355-52513633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:223
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):35, 16

               
               
               Conread position:15-187
               
               
               Cow position:chr9:19903172-19902995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:15-198
               
               
               Cow position:chr9:23797330-23797139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):36, 181

               
               
               Conread position:15-200
               
               
               Cow position:chr9:29819807-29819619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):64, 138

               
               
               Conread position:15-201
               
               
               Cow position:chr9:37199215-37199027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):78, 49

               
               
               Conread position:15-304
               
               
               Cow position:chr9:17518397-17518693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):44, 235

               
               
               Conread position:15-309
               
               
               Cow position:chr9:1938224-1937928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):34, 23

               
               
               Conread position:17-186
               
               
               Cow position:chr9:31771989-31772164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 22

               
               
               Conread position:17-189
               
               
               Cow position:chr9:34284041-34283865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):42, 13

               
               
               Conread position:17-192
               
               
               Cow position:chr9:6851979-6852159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):36, 93

               
               
               Conread position:17-207
               
               
               Cow position:chr9:16811570-16811761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 26

               
               
               Conread position:17-207
               
               
               Cow position:chr9:22638194-22637995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:17-207
               
               
               Cow position:chr9:29840974-29840799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:17-319
               
               
               Cow position:chr9:18217010-18217310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 180

               
               
               Conread position:17-319
               
               
               Cow position:chr9:31638552-31638889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):36, 26

               
               
               Conread position:19-198
               
               
               Cow position:chr9:22408834-22408658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):69, 24

               
               
               Conread position:19-201
               
               
               Cow position:chr9:35832528-35832719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):29, 165

               
               
               Conread position:20-150
               
               
               Cow position:chr9:35375514-35375376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):26, 111

               
               
               Conread position:20-169
               
               
               Cow position:chr9:40776884-40776729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:20-179
               
               
               Cow position:chr9:38289238-38289402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):33, 89

               
               
               Conread position:20-184
               
               
               Cow position:chr9:44709911-44709745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 30

               
               
               Conread position:20-185
               
               
               Cow position:chr9:9358899-9358725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:20-185
               
               
               Cow position:chr9:26403871-26403700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:20-188
               
               
               Cow position:chr9:8834043-8834215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):28, 75

               
               
               Conread position:20-188
               
               
               Cow position:chr9:23788524-23788351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:20-188
               
               
               Cow position:chr9:26434970-26435145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):29, 16

               
               
               Conread position:20-189
               
               
               Cow position:chr9:25400110-25400286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):26, 106

               
               
               Conread position:20-192
               
               
               Cow position:chr9:25921914-25921731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):23, 107

               
               
               Conread position:20-196
               
               
               Cow position:chr9:9503166-9502993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 23

               
               
               Conread position:20-196
               
               
               Cow position:chr9:28354607-28354421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:20-197
               
               
               Cow position:chr9:1877921-1878101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):44, 23

               
               
               Conread position:20-197
               
               
               Cow position:chr9:8723883-8723695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-198
               
               
               Cow position:chr9:4630191-4630006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:20-198
               
               
               Cow position:chr9:23632573-23632750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):91, 58

               
               
               Conread position:20-198
               
               
               Cow position:chr9:63784838-63785013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):70, 12

               
               
               Conread position:20-201
               
               
               Cow position:chr9:3353436-3353261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):73, 7

               
               
               Conread position:20-201
               
               
               Cow position:chr9:5342165-5342348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:20-201
               
               
               Cow position:chr9:5469949-5469770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):67, 33

               
               
               Conread position:20-201
               
               
               Cow position:chr9:15215599-15215788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-201
               
               
               Cow position:chr9:20755669-20755857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):27, 113

               
               
               Conread position:20-201
               
               
               Cow position:chr9:21383866-21384053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):70, 179

               
               
               Conread position:20-201
               
               
               Cow position:chr9:43342416-43342230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):37, 8

               
               
               Conread position:20-201
               
               
               Cow position:chr9:44396745-44396563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):28, 18

               
               
               Conread position:20-201
               
               
               Cow position:chr9:58662325-58662145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):35, 23

               
               
               Conread position:20-204
               
               
               Cow position:chr9:9199694-9199883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 93

               
               
               Conread position:20-204
               
               
               Cow position:chr9:34410309-34410500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):31, 17

               
               
               Conread position:20-204
               
               
               Cow position:chr9:46981144-46981331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):53, 17

               
               
               Conread position:20-206
               
               
               Cow position:chr9:35028080-35028270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):35, 18

               
               
               Conread position:20-207
               
               
               Cow position:chr9:5110946-5110752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):29, 6

               
               
               Conread position:20-207
               
               
               Cow position:chr9:15805834-15806030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):28, 18

               
               
               Conread position:20-207
               
               
               Cow position:chr9:32669861-32670054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:20-208
               
               
               Cow position:chr9:26102810-26102627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 76

               
               
               Conread position:20-209
               
               
               Cow position:chr9:10308922-10309107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):73, 21

               
               
               Conread position:20-209
               
               
               Cow position:chr9:54677334-54677155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):91, 23

               
               
               Conread position:20-214
               
               
               Cow position:chr9:52407253-52407055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 148

               
               
               Conread position:20-223
               
               
               Cow position:chr9:9461569-9461777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):31, 64

               
               
               Conread position:20-230
               
               
               Cow position:chr9:26310595-26310372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:20-299
               
               
               Cow position:chr9:8288704-8288421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):31, 113

               
               
               Conread position:20-307
               
               
               Cow position:chr9:39681426-39681128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:21-187
               
               
               Cow position:chr9:63153732-63153901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):69, 17

               
               
               Conread position:21-201
               
               
               Cow position:chr9:4646243-4646426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):61, 22

               
               
               Conread position:21-201
               
               
               Cow position:chr9:41781740-41781555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:21-207
               
               
               Cow position:chr9:9815501-9815306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:21-207
               
               
               Cow position:chr9:33542142-33541948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):34, 16

               
               
               Conread position:22-246
               
               
               Cow position:chr9:58425807-58426028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):65, 35

               
               
               Conread position:23-200
               
               
               Cow position:chr9:7805879-7806061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:23-208
               
               
               Cow position:chr9:16217057-16216867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:24-189
               
               
               Cow position:chr9:5163901-5164074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):31, 97

               
               
               Conread position:24-201
               
               
               Cow position:chr9:6954164-6954351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):35, 13

               
               
               Conread position:24-207
               
               
               Cow position:chr9:8901141-8901333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 160

               
               
               Conread position:24-226
               
               
               Cow position:chr9:48587361-48587562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):18, 28

               
               
               Conread position:25-304
               
               
               Cow position:chr9:8976339-8976606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):68, 18

               
               
               Conread position:26-170
               
               
               Cow position:chr9:39577813-39577669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):17, 68

               
               
               Conread position:26-195
               
               
               Cow position:chr9:41785292-41785117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):12, 139

               
               
               Conread position:26-207
               
               
               Cow position:chr9:26477296-26477108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:26-207
               
               
               Cow position:chr9:42062184-42061991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:27-201
               
               
               Cow position:chr9:22152003-22152186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:27-311
               
               
               Cow position:chr9:28686468-28686176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 11

               
               
               Conread position:29-198
               
               
               Cow position:chr9:25583908-25583731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:30-198
               
               
               Cow position:chr9:32955608-32955782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 147

               
               
               Conread position:30-204
               
               
               Cow position:chr9:5666142-5665964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):29, 156

               
               
               Conread position:34-204
               
               
               Cow position:chr9:8992110-8992286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):57, 23

               
               
               Conread position:35-186
               
               
               Cow position:chr9:58368927-58369082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:35-207
               
               
               Cow position:chr9:1729606-1729781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):49, 22

               
               
               Conread position:36-201
               
               
               Cow position:chr9:17740876-17741043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):57, 26

               
               
               Conread position:36-304
               
               
               Cow position:chr9:19067849-19067599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):57, 26

               
               
               Conread position:38-208
               
               
               Cow position:chr9:13743859-13744037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 151

               
               
               Conread position:38-209
               
               
               Cow position:chr9:52267693-52267864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):67, 26

               
               
               Conread position:38-215
               
               
               Cow position:chr9:24652469-24652289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):41, 19

               
               
               Conread position:39-319
               
               
               Cow position:chr9:8562885-8562618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):54, 76

               
               
               Conread position:40-174
               
               
               Cow position:chr9:48017044-48016906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):53, 17

               
               
               Conread position:40-198
               
               
               Cow position:chr9:52258003-52258160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):53, 71

               
               
               Conread position:40-209
               
               
               Cow position:chr9:47214480-47214653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):12, 145

               
               
               Conread position:40-244
               
               
               Cow position:chr9:39758583-39758376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):12, 156

               
               
               Conread position:41-211
               
               
               Cow position:chr9:56827544-56827364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:41-213
               
               
               Cow position:chr9:39315913-39315740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):50, 113

               
               
               Conread position:41-245
               
               
               Cow position:chr9:26859412-26859209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):12, 53

               
               
               Conread position:41-312
               
               
               Cow position:chr9:3738162-3738442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):52, 21

               
               
               Conread position:42-189
               
               
               Cow position:chr9:64155788-64155940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:43-188
               
               
               Cow position:chr9:64629301-64629450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):15, 129

               
               
               Conread position:43-202
               
               
               Cow position:chr9:22433868-22434030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:44-223
               
               
               Cow position:chr9:37069498-37069687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 9

               
               
               Conread position:45-205
               
               
               Cow position:chr9:52763702-52763864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):48, 17

               
               
               Conread position:46-172
               
               
               Cow position:chr9:44915040-44915169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 20

               
               
               Conread position:46-196
               
               
               Cow position:chr9:33347433-33347586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:46-204
               
               
               Cow position:chr9:55529852-55529696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):47, 11

               
               
               Conread position:46-216
               
               
               Cow position:chr9:15389167-15389339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:47-216
               
               
               Cow position:chr9:55494929-55495103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:48-209
               
               
               Cow position:chr9:16300512-16300675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):7, 136

               
               
               Conread position:50-198
               
               
               Cow position:chr9:35793728-35793579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:50-207
               
               
               Cow position:chr9:31347003-31346845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 144

               
               
               Conread position:50-313
               
               
               Cow position:chr9:34014195-34014444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 144

               
               
               Conread position:51-304
               
               
               Cow position:chr9:16137290-16137548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:51-309
               
               
               Cow position:chr9:5072785-5073034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):42, 95

               
               
               Conread position:52-209
               
               
               Cow position:chr9:27345532-27345693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):34, 122

               
               
               Conread position:56-213
               
               
               Cow position:chr9:32858584-32858746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 110

               
               
               Conread position:57-184
               
               
               Cow position:chr9:7409813-7409679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-187
               
               
               Cow position:chr9:31098837-31098972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):13, 129

               
               
               Conread position:57-187
               
               
               Cow position:chr9:44584640-44584507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):33, 127

               
               
               Conread position:57-194
               
               
               Cow position:chr9:44822277-44822418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-197
               
               
               Cow position:chr9:9243586-9243454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-201
               
               
               Cow position:chr9:36458048-36457898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:57-201
               
               
               Cow position:chr9:41964688-41964835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):34, 81

               
               
               Conread position:57-202
               
               
               Cow position:chr9:23970849-23970997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 139

               
               
               Conread position:57-204
               
               
               Cow position:chr9:39149126-39148975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:57-207
               
               
               Cow position:chr9:34484642-34484486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-207
               
               
               Cow position:chr9:41644703-41644857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:57-209
               
               
               Cow position:chr9:12786426-12786580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):25, 138

               
               
               Conread position:57-213
               
               
               Cow position:chr9:32348767-32348928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-236
               
               
               Cow position:chr9:10877848-10878024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):36, 93

               
               
               Conread position:57-237
               
               
               Cow position:chr9:25628131-25627943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 12

               
               
               Conread position:57-268
               
               
               Cow position:chr9:31814338-31814547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):22, 138

               
               
               Conread position:57-300
               
               
               Cow position:chr9:34888251-34888503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):28, 52

               
               
               Conread position:57-308
               
               
               Cow position:chr9:36445667-36445395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):29, 144

               
               
               Conread position:58-262
               
               
               Cow position:chr9:36850043-36849848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):51, 31

               
               
               Conread position:58-304
               
               
               Cow position:chr9:24243675-24243931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:59-222
               
               
               Cow position:chr9:63134436-63134275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):50, 34

               
               
               Conread position:60-304
               
               
               Cow position:chr9:36634723-36634965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):51, 18

               
               
               Conread position:61-196
               
               
               Cow position:chr9:32089432-32089292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:61-197
               
               
               Cow position:chr9:21292364-21292505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:61-201
               
               
               Cow position:chr9:25375693-25375835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):32, 70

               
               
               Conread position:61-223
               
               
               Cow position:chr9:54051817-54051653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):32, 58

               
               
               Conread position:61-238
               
               
               Cow position:chr9:60355169-60355354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):32, 181

               
               
               Conread position:62-201
               
               
               Cow position:chr9:20637415-20637273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):31, 78

               
               
               Conread position:62-217
               
               
               Cow position:chr9:14974877-14975037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:62-318
               
               
               Cow position:chr9:6293637-6293371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:62-319
               
               
               Cow position:chr9:55354653-55354406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):31, 132

               
               
               Conread position:64-311
               
               
               Cow position:chr9:53413198-53413457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:65-311
               
               
               Cow position:chr9:52739868-52740105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):28, 36

               
               
               Conread position:68-201
               
               
               Cow position:chr9:14738285-14738148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:68-309
               
               
               Cow position:chr9:52807369-52807596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):17, 115

               
               
               Conread position:69-311
               
               
               Cow position:chr9:34065513-34065770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:71-207
               
               
               Cow position:chr9:35466489-35466630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:72-195
               
               
               Cow position:chr9:3468678-3468552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:73-215
               
               
               Cow position:chr9:57116942-57117086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:75-207
               
               
               Cow position:chr9:20828929-20828799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):12, 34

               
               
               Conread position:76-201
               
               
               Cow position:chr9:31344579-31344708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:76-311
               
               
               Cow position:chr9:41470072-41470306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):11, 90

               
               
               Conread position:79-195
               
               
               Cow position:chr9:52648835-52648950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 102

               
               
               Conread position:79-198
               
               
               Cow position:chr9:2951482-2951606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-200
               
               
               Cow position:chr9:34917162-34917284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):14, 103

               
               
               Conread position:79-201
               
               
               Cow position:chr9:34707289-34707412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):8, 57

               
               
               Conread position:79-207
               
               
               Cow position:chr9:28718735-28718605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-220
               
               
               Cow position:chr9:26277853-26277709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):15, 103

               
               
               Conread position:79-235
               
               
               Cow position:chr9:61981542-61981386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):8, 141

               
               
               Conread position:79-239
               
               
               Cow position:chr9:34135739-34135579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):8, 90

               
               
               Conread position:82-209
               
               
               Cow position:chr9:1884110-1884239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:82-223
               
               
               Cow position:chr9:3847422-3847281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):5, 111

               
               
               Conread position:82-226
               
               
               Cow position:chr9:5407500-5407642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):28, 99

               
               
               Conread position:84-319
               
               
               Cow position:chr9:42998528-42998755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):82, 121

               
               
               Conread position:86-196
               
               
               Cow position:chr9:52998365-52998475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):24, 49

               
               
               Conread position:86-206
               
               
               Cow position:chr9:35295705-35295584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-207
               
               
               Cow position:chr9:8645282-8645159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-288
               
               
               Cow position:chr9:31345515-31345323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):25, 106

               
               
               Conread position:86-309
               
               
               Cow position:chr9:45455090-45454865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):24, 168

               
               
               Conread position:86-310
               
               
               Cow position:chr9:1909599-1909829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:86-318
               
               
               Cow position:chr9:23403833-23403608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):24, 106

               
               
               Conread position:87-198
               
               
               Cow position:chr9:22070947-22071059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:87-207
               
               
               Cow position:chr9:37955157-37955278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:88-200
               
               
               Cow position:chr9:18003179-18003290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):22, 53

               
               
               Conread position:88-214
               
               
               Cow position:chr9:5156114-5155988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 118

               
               
               Conread position:88-300
               
               
               Cow position:chr9:8122499-8122282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):92, 24

               
               
               Conread position:88-301
               
               
               Cow position:chr9:11427672-11427477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):22, 104

               
               
               Conread position:88-304
               
               
               Cow position:chr9:46190155-46189945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):21, 103

               
               
               Conread position:88-308
               
               
               Cow position:chr9:33681672-33681467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):28, 103

               
               
               Conread position:88-311
               
               
               Cow position:chr9:22375188-22374985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):5, 72

               
               
               Conread position:89-197
               
               
               Cow position:chr9:35932802-35932911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:89-206
               
               
               Cow position:chr9:9088615-9088501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:89-227
               
               
               Cow position:chr9:14597226-14597364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):20, 105

               
               
               Conread position:92-201
               
               
               Cow position:chr9:9091096-9091206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:92-206
               
               
               Cow position:chr9:34423631-34423515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:93-286
               
               
               Cow position:chr9:31270500-31270303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):13, 187

               
               
               Conread position:93-299
               
               
               Cow position:chr9:41716449-41716229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:93-311
               
               
               Cow position:chr9:50540694-50540920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):17, 42

               
               
               Conread position:95-300
               
               
               Cow position:chr9:64154666-64154883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:104-244
               
               
               Cow position:chr9:1878918-1878777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):116, 5

               
               
               Conread position:109-239
               
               
               Cow position:chr9:29578272-29578142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:111-201
               
               
               Cow position:chr9:60741195-60741284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:91
               
               
               Alignm identity:78
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:111-221
               
               
               Cow position:chr9:13141527-13141419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:111-300
               
               
               Cow position:chr9:20329793-20329976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):104, 63

               
               
               Conread position:111-304
               
               
               Cow position:chr9:49225393-49225205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:126-318
               
               
               Cow position:chr9:8023100-8022920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:132-307
               
               
               Cow position:chr9:53553434-53553603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):122, 59

               
               
               Conread position:139-308
               
               
               Cow position:chr9:42986325-42986487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):103, 52

               
               
               Conread position:147-304
               
               
               Cow position:chr9:2927738-2927578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 108

               
               
               Conread position:192-319
               
               
               Cow position:chr9:7951740-7951868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:1-171
               
               
               Cow position:chrX:20881989-20881818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):58, 95

               
               
               Conread position:1-177
               
               
               Cow position:chrX:1499615-1499799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:1-184
               
               
               Cow position:chrX:1503286-1503467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):39, 64

               
               
               Conread position:1-184
               
               
               Cow position:chrX:46429872-46429679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1-185
               
               
               Cow position:chrX:45968102-45968289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):90, 65

               
               
               Conread position:1-187
               
               
               Cow position:chrX:11073244-11073049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):23, 189

               
               
               Conread position:1-188
               
               
               Cow position:chrX:36514952-36514749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):18, 196

               
               
               Conread position:1-197
               
               
               Cow position:chrX:9201498-9201702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 65

               
               
               Conread position:1-198
               
               
               Cow position:chrX:9651077-9650870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:1-198
               
               
               Cow position:chrX:42873336-42873539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):18, 113

               
               
               Conread position:1-199
               
               
               Cow position:chrX:41123010-41123215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-201
               
               
               Cow position:chrX:22074742-22074957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):21, 99

               
               
               Conread position:1-201
               
               
               Cow position:chrX:34543730-34543941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:1-202
               
               
               Cow position:chrX:22454148-22453941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):62, 176

               
               
               Conread position:1-204
               
               
               Cow position:chrX:4768691-4768893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):18, 88

               
               
               Conread position:1-205
               
               
               Cow position:chrX:11318017-11317807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:1-205
               
               
               Cow position:chrX:14955816-14955608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:1-206
               
               
               Cow position:chrX:4279167-4278957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):41, 197

               
               
               Conread position:1-207
               
               
               Cow position:chrX:4632901-4632692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):65, 36

               
               
               Conread position:1-207
               
               
               Cow position:chrX:15545842-15546044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):89, 36

               
               
               Conread position:1-207
               
               
               Cow position:chrX:40283076-40283285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):52, 111

               
               
               Conread position:1-208
               
               
               Cow position:chrX:40108568-40108356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):58, 42

               
               
               Conread position:1-209
               
               
               Cow position:chrX:26881620-26881399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-212
               
               
               Cow position:chrX:6463553-6463766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):18, 101

               
               
               Conread position:1-213
               
               
               Cow position:chrX:42855397-42855625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):18, 216

               
               
               Conread position:1-215
               
               
               Cow position:chrX:36975900-36976120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):52, 36

               
               
               Conread position:1-220
               
               
               Cow position:chrX:5679623-5679396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):18, 118

               
               
               Conread position:1-221
               
               
               Cow position:chrX:5872263-5872494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:1-223
               
               
               Cow position:chrX:23785604-23785825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):51, 18

               
               
               Conread position:1-223
               
               
               Cow position:chrX:43730276-43730045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:180
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:1-226
               
               
               Cow position:chrX:31373495-31373718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):78, 25

               
               
               Conread position:1-288
               
               
               Cow position:chrX:6690308-6690031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):45, 185

               
               
               Conread position:1-299
               
               
               Cow position:chrX:34315464-34315770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):21, 206

               
               
               Conread position:1-300
               
               
               Cow position:chrX:31311977-31312280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):42, 199

               
               
               Conread position:1-310
               
               
               Cow position:chrX:18694982-18694661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):14, 48

               
               
               Conread position:1-311
               
               
               Cow position:chrX:11085108-11084804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):89, 33

               
               
               Conread position:1-313
               
               
               Cow position:chrX:23562577-23562902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 319

               
               
               Conread position:2-208
               
               
               Cow position:chrX:31436421-31436638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:3-179
               
               
               Cow position:chrX:11082676-11082487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-189
               
               
               Cow position:chrX:126722-126912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 106

               
               
               Conread position:4-196
               
               
               Cow position:chrX:22387289-22387098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:5-153
               
               
               Cow position:chrX:27685202-27685360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:5-161
               
               
               Cow position:chrX:45403873-45403708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-164
               
               
               Cow position:chrX:6541782-6541613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:5-164
               
               
               Cow position:chrX:11856382-11856550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-175
               
               
               Cow position:chrX:29115665-29115837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):74, 105

               
               
               Conread position:5-178
               
               
               Cow position:chrX:31515123-31515308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):29, 18

               
               
               Conread position:5-182
               
               
               Cow position:chrX:47054573-47054387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):41, 109

               
               
               Conread position:5-184
               
               
               Cow position:chrX:25328652-25328476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 32

               
               
               Conread position:5-185
               
               
               Cow position:chrX:41068675-41068866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:5-186
               
               
               Cow position:chrX:33000857-33001048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):50, 32

               
               
               Conread position:5-187
               
               
               Cow position:chrX:9252208-9252020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:5-187
               
               
               Cow position:chrX:44054761-44054945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):84, 30

               
               
               Conread position:5-189
               
               
               Cow position:chrX:5900423-5900607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):86, 98

               
               
               Conread position:5-189
               
               
               Cow position:chrX:19943283-19943091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):45, 130

               
               
               Conread position:5-189
               
               
               Cow position:chrX:23113230-23113431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:5-189
               
               
               Cow position:chrX:27228082-27228272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:5-189
               
               
               Cow position:chrX:36356067-36356250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):46, 102

               
               
               Conread position:5-189
               
               
               Cow position:chrX:38208589-38208400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):41, 28

               
               
               Conread position:5-189
               
               
               Cow position:chrX:45598647-45598460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):16, 11

               
               
               Conread position:5-189
               
               
               Cow position:chrX:46587774-46587967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-194
               
               
               Cow position:chrX:25036941-25037137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:5-195
               
               
               Cow position:chrX:14973786-14973595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):45, 86

               
               
               Conread position:5-195
               
               
               Cow position:chrX:22915082-22914891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):83, 11

               
               
               Conread position:5-196
               
               
               Cow position:chrX:7721943-7722140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 112

               
               
               Conread position:5-196
               
               
               Cow position:chrX:18204507-18204311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):84, 32

               
               
               Conread position:5-196
               
               
               Cow position:chrX:38728692-38728886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):82, 55

               
               
               Conread position:5-196
               
               
               Cow position:chrX:44339370-44339173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):41, 94

               
               
               Conread position:5-198
               
               
               Cow position:chrX:1616090-1615896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):38, 152

               
               
               Conread position:5-198
               
               
               Cow position:chrX:11614654-11614846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):47, 89

               
               
               Conread position:5-198
               
               
               Cow position:chrX:23091822-23092027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):45, 12

               
               
               Conread position:5-198
               
               
               Cow position:chrX:34792354-34792159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):33, 58

               
               
               Conread position:5-198
               
               
               Cow position:chrX:35985772-35985971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):37, 164

               
               
               Conread position:5-198
               
               
               Cow position:chrX:38964059-38964262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:5-198
               
               
               Cow position:chrX:42492563-42492370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):85, 37

               
               
               Conread position:5-198
               
               
               Cow position:chrX:45113573-45113776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-201
               
               
               Cow position:chrX:1360040-1360244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):58, 32

               
               
               Conread position:5-201
               
               
               Cow position:chrX:4515638-4515848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 145

               
               
               Conread position:5-201
               
               
               Cow position:chrX:10516204-10516410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-201
               
               
               Cow position:chrX:12095819-12095615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:5-201
               
               
               Cow position:chrX:17888465-17888266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):54, 91

               
               
               Conread position:5-201
               
               
               Cow position:chrX:28134300-28134495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):75, 38

               
               
               Conread position:5-201
               
               
               Cow position:chrX:33654883-33654687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):88, 31

               
               
               Conread position:5-201
               
               
               Cow position:chrX:34411796-34412003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:5-201
               
               
               Cow position:chrX:34554680-34554880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):62, 41

               
               
               Conread position:5-201
               
               
               Cow position:chrX:37836543-37836735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):101, 88

               
               
               Conread position:5-201
               
               
               Cow position:chrX:41674064-41674262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 51

               
               
               Conread position:5-201
               
               
               Cow position:chrX:41878978-41878777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):48, 93

               
               
               Conread position:5-204
               
               
               Cow position:chrX:29050201-29050408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:5-204
               
               
               Cow position:chrX:29121000-29121207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 183

               
               
               Conread position:5-204
               
               
               Cow position:chrX:35885773-35885567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):43, 23

               
               
               Conread position:5-206
               
               
               Cow position:chrX:29601876-29601666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-207
               
               
               Cow position:chrX:4109144-4109347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:5-207
               
               
               Cow position:chrX:11633634-11633844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):50, 184

               
               
               Conread position:5-207
               
               
               Cow position:chrX:17231687-17231899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:5-207
               
               
               Cow position:chrX:25035425-25035219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):54, 32

               
               
               Conread position:5-207
               
               
               Cow position:chrX:27174950-27175161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):17, 10

               
               
               Conread position:5-207
               
               
               Cow position:chrX:30133366-30133158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:5-207
               
               
               Cow position:chrX:30962919-30962713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):85, 45

               
               
               Conread position:5-207
               
               
               Cow position:chrX:31250341-31250551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):49, 32

               
               
               Conread position:5-207
               
               
               Cow position:chrX:38549401-38549610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:5-207
               
               
               Cow position:chrX:42247232-42247019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-207
               
               
               Cow position:chrX:44192495-44192281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-208
               
               
               Cow position:chrX:15147233-15147034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):105, 38

               
               
               Conread position:5-208
               
               
               Cow position:chrX:42235574-42235361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):44, 186

               
               
               Conread position:5-209
               
               
               Cow position:chrX:22115362-22115153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):33, 60

               
               
               Conread position:5-209
               
               
               Cow position:chrX:28878215-28878010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):88, 44

               
               
               Conread position:5-214
               
               
               Cow position:chrX:7351255-7351467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):41, 109

               
               
               Conread position:5-214
               
               
               Cow position:chrX:12290676-12290889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):32, 46

               
               
               Conread position:5-216
               
               
               Cow position:chrX:6278546-6278322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:5-218
               
               
               Cow position:chrX:34441497-34441281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 78

               
               
               Conread position:5-219
               
               
               Cow position:chrX:4043906-4043694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):75, 106

               
               
               Conread position:5-222
               
               
               Cow position:chrX:11717834-11717605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:5-222
               
               
               Cow position:chrX:33639927-33640153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:5-223
               
               
               Cow position:chrX:32978123-32977908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):16, 12

               
               
               Conread position:5-226
               
               
               Cow position:chrX:31627027-31626795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):16, 12

               
               
               Conread position:5-227
               
               
               Cow position:chrX:6260194-6259969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):58, 187

               
               
               Conread position:5-227
               
               
               Cow position:chrX:6265645-6265416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):46, 38

               
               
               Conread position:5-234
               
               
               Cow position:chrX:9365721-9365484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):47, 25

               
               
               Conread position:5-235
               
               
               Cow position:chrX:29680306-29680072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:181
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):53, 181

               
               
               Conread position:5-235
               
               
               Cow position:chrX:38227139-38226918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):72, 29

               
               
               Conread position:5-239
               
               
               Cow position:chrX:46072866-46072618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):48, 231

               
               
               Conread position:5-240
               
               
               Cow position:chrX:10412032-10411787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):45, 198

               
               
               Conread position:5-251
               
               
               Cow position:chrX:41027110-41027365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):38, 251

               
               
               Conread position:5-299
               
               
               Cow position:chrX:16348614-16348331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:224
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):41, 105

               
               
               Conread position:5-301
               
               
               Cow position:chrX:40269442-40269734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):46, 192

               
               
               Conread position:5-304
               
               
               Cow position:chrX:17725928-17726243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):33, 62

               
               
               Conread position:5-308
               
               
               Cow position:chrX:616308-616007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):34, 186

               
               
               Conread position:5-310
               
               
               Cow position:chrX:40480914-40480614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):47, 33

               
               
               Conread position:5-311
               
               
               Cow position:chrX:878429-878114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):45, 215

               
               
               Conread position:5-311
               
               
               Cow position:chrX:19097268-19096959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 128

               
               
               Conread position:5-311
               
               
               Cow position:chrX:23514061-23513766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):59, 30

               
               
               Conread position:5-311
               
               
               Cow position:chrX:32820984-32821274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):48, 188

               
               
               Conread position:6-189
               
               
               Cow position:chrX:34565236-34565427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):36, 131

               
               
               Conread position:6-190
               
               
               Cow position:chrX:43779891-43779706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):38, 150

               
               
               Conread position:6-195
               
               
               Cow position:chrX:41238398-41238204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:6-214
               
               
               Cow position:chrX:39220034-39220249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:7-175
               
               
               Cow position:chrX:1514454-1514288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):45, 87

               
               
               Conread position:7-176
               
               
               Cow position:chrX:2523722-2523550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):88, 55

               
               
               Conread position:7-184
               
               
               Cow position:chrX:17662637-17662458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):48, 106

               
               
               Conread position:7-192
               
               
               Cow position:chrX:37119550-37119740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 169

               
               
               Conread position:7-197
               
               
               Cow position:chrX:15007193-15006997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):52, 170

               
               
               Conread position:7-198
               
               
               Cow position:chrX:8797209-8797403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):44, 92

               
               
               Conread position:7-200
               
               
               Cow position:chrX:41871021-41871224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):42, 31

               
               
               Conread position:7-207
               
               
               Cow position:chrX:16575079-16575275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):77, 35

               
               
               Conread position:7-209
               
               
               Cow position:chrX:5017458-5017256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 90

               
               
               Conread position:7-303
               
               
               Cow position:chrX:41271041-41270740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):44, 197

               
               
               Conread position:7-304
               
               
               Cow position:chrX:23561817-23562101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):81, 36

               
               
               Conread position:7-304
               
               
               Cow position:chrX:37232369-37232670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):87, 39

               
               
               Conread position:7-309
               
               
               Cow position:chrX:13382286-13382575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):46, 90

               
               
               Conread position:9-200
               
               
               Cow position:chrX:31442873-31442674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):46, 189

               
               
               Conread position:12-172
               
               
               Cow position:chrX:13359460-13359301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):75, 44

               
               
               Conread position:12-176
               
               
               Cow position:chrX:12082366-12082192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 23

               
               
               Conread position:12-198
               
               
               Cow position:chrX:21665281-21665086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:12-213
               
               
               Cow position:chrX:16409565-16409773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):11, 41

               
               
               Conread position:12-227
               
               
               Cow position:chrX:37910403-37910623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):30, 172

               
               
               Conread position:13-201
               
               
               Cow position:chrX:6599824-6599625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):9, 57

               
               
               Conread position:13-207
               
               
               Cow position:chrX:27446658-27446849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):75, 30

               
               
               Conread position:14-161
               
               
               Cow position:chrX:48652760-48652604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):8, 25

               
               
               Conread position:15-173
               
               
               Cow position:chrX:29585084-29585248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 52

               
               
               Conread position:15-201
               
               
               Cow position:chrX:32420182-32420367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 23

               
               
               Conread position:15-201
               
               
               Cow position:chrX:42927855-42927667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):78, 35

               
               
               Conread position:15-304
               
               
               Cow position:chrX:27771999-27771709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):31, 110

               
               
               Conread position:15-304
               
               
               Cow position:chrX:40532080-40531798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):30, 184

               
               
               Conread position:17-200
               
               
               Cow position:chrX:25441564-25441388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:17-207
               
               
               Cow position:chrX:24287963-24287771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):7, 21

               
               
               Conread position:17-215
               
               
               Cow position:chrX:13868669-13868872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):46, 170

               
               
               Conread position:19-184
               
               
               Cow position:chrX:38725781-38725948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):74, 16

               
               
               Conread position:19-194
               
               
               Cow position:chrX:23188809-23188634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):74, 86

               
               
               Conread position:19-201
               
               
               Cow position:chrX:3579913-3580101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):44, 19

               
               
               Conread position:19-207
               
               
               Cow position:chrX:12309418-12309223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:20-153
               
               
               Cow position:chrX:27680364-27680507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:20-161
               
               
               Cow position:chrX:26625707-26625554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:20-185
               
               
               Cow position:chrX:10305379-10305210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):23, 89

               
               
               Conread position:20-186
               
               
               Cow position:chrX:41941595-41941765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):30, 43

               
               
               Conread position:20-187
               
               
               Cow position:chrX:43116693-43116868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):29, 18

               
               
               Conread position:20-188
               
               
               Cow position:chrX:45884005-45883827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-194
               
               
               Cow position:chrX:29289548-29289728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:20-196
               
               
               Cow position:chrX:15820566-15820744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):23, 39

               
               
               Conread position:20-198
               
               
               Cow position:chrX:27261157-27261346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-201
               
               
               Cow position:chrX:20697638-20697454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:20-201
               
               
               Cow position:chrX:24331748-24331933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:20-201
               
               
               Cow position:chrX:34222683-34222869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):26, 129

               
               
               Conread position:20-201
               
               
               Cow position:chrX:34238684-34238879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:20-201
               
               
               Cow position:chrX:38094552-38094364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):38, 30

               
               
               Conread position:20-201
               
               
               Cow position:chrX:44703103-44702909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:20-201
               
               
               Cow position:chrX:46793777-46793591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):29, 17

               
               
               Conread position:20-204
               
               
               Cow position:chrX:29544906-29544717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:20-206
               
               
               Cow position:chrX:18964856-18964668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:20-206
               
               
               Cow position:chrX:46433461-46433652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):33, 178

               
               
               Conread position:20-207
               
               
               Cow position:chrX:4645943-4645752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 23

               
               
               Conread position:20-207
               
               
               Cow position:chrX:6407513-6407706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):29, 107

               
               
               Conread position:20-207
               
               
               Cow position:chrX:31294594-31294407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):73, 23

               
               
               Conread position:20-207
               
               
               Cow position:chrX:36866140-36866335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 142

               
               
               Conread position:20-207
               
               
               Cow position:chrX:40680580-40680777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:20-208
               
               
               Cow position:chrX:28866036-28865845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):7, 91

               
               
               Conread position:20-208
               
               
               Cow position:chrX:35268834-35269025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):29, 56

               
               
               Conread position:20-209
               
               
               Cow position:chrX:169576-169381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):28, 140

               
               
               Conread position:20-209
               
               
               Cow position:chrX:25815939-25815737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):19, 157

               
               
               Conread position:20-209
               
               
               Cow position:chrX:30840508-30840711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:20-214
               
               
               Cow position:chrX:34502891-34503091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:161
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):35, 194

               
               
               Conread position:20-214
               
               
               Cow position:chrX:46532532-46532327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):26, 170

               
               
               Conread position:20-215
               
               
               Cow position:chrX:17956664-17956857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):32, 104

               
               
               Conread position:20-217
               
               
               Cow position:chrX:44396987-44397182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):71, 91

               
               
               Conread position:20-219
               
               
               Cow position:chrX:37489692-37489891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):68, 23

               
               
               Conread position:20-223
               
               
               Cow position:chrX:27394053-27393847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 37

               
               
               Conread position:20-236
               
               
               Cow position:chrX:29553254-29553475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):43, 6

               
               
               Conread position:20-237
               
               
               Cow position:chrX:43527479-43527703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):43, 23

               
               
               Conread position:20-240
               
               
               Cow position:chrX:23088833-23089044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):65, 30

               
               
               Conread position:20-244
               
               
               Cow position:chrX:3130542-3130771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 166

               
               
               Conread position:20-310
               
               
               Cow position:chrX:37129236-37129532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 221

               
               
               Conread position:20-314
               
               
               Cow position:chrX:23498709-23498427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 23

               
               
               Conread position:21-179
               
               
               Cow position:chrX:917395-917233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:21-201
               
               
               Cow position:chrX:16762739-16762930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):27, 171

               
               
               Conread position:21-204
               
               
               Cow position:chrX:4269091-4268905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 12

               
               
               Conread position:21-204
               
               
               Cow position:chrX:31729412-31729602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):31, 16

               
               
               Conread position:22-174
               
               
               Cow position:chrX:19690189-19690345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):37, 43

               
               
               Conread position:22-201
               
               
               Cow position:chrX:38642220-38642407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):21, 47

               
               
               Conread position:22-208
               
               
               Cow position:chrX:7710567-7710375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):37, 21

               
               
               Conread position:22-217
               
               
               Cow position:chrX:7277884-7278081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):33, 162

               
               
               Conread position:22-223
               
               
               Cow position:chrX:7646224-7646434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 168

               
               
               Conread position:23-207
               
               
               Cow position:chrX:8731059-8731256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:24-196
               
               
               Cow position:chrX:32318276-32318458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:24-198
               
               
               Cow position:chrX:27511402-27511582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:24-207
               
               
               Cow position:chrX:48558720-48558909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:24-309
               
               
               Cow position:chrX:20743575-20743884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:231
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):24, 276

               
               
               Conread position:25-190
               
               
               Cow position:chrX:22822023-22822192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:26-201
               
               
               Cow position:chrX:31489493-31489677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:26-207
               
               
               Cow position:chrX:20339916-20339731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):22, 49

               
               
               Conread position:26-209
               
               
               Cow position:chrX:33204991-33204806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):20, 37

               
               
               Conread position:29-213
               
               
               Cow position:chrX:38967871-38968057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):51, 14

               
               
               Conread position:30-186
               
               
               Cow position:chrX:17966322-17966483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:30-313
               
               
               Cow position:chrX:25411886-25412155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:217
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):29, 142

               
               
               Conread position:31-207
               
               
               Cow position:chrX:42836164-42836343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):26, 11

               
               
               Conread position:32-201
               
               
               Cow position:chrX:32574293-32574474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:32-205
               
               
               Cow position:chrX:42282555-42282737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):5, 60

               
               
               Conread position:34-201
               
               
               Cow position:chrX:27075066-27074891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:34-204
               
               
               Cow position:chrX:42432529-42432349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):30, 99

               
               
               Conread position:36-310
               
               
               Cow position:chrX:18046388-18046671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):16, 70

               
               
               Conread position:37-190
               
               
               Cow position:chrX:20584318-20584474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:38-186
               
               
               Cow position:chrX:37955838-37955989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):46, 24

               
               
               Conread position:38-204
               
               
               Cow position:chrX:16984632-16984800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):55, 26

               
               
               Conread position:38-204
               
               
               Cow position:chrX:26205457-26205289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):55, 19

               
               
               Conread position:38-207
               
               
               Cow position:chrX:40336900-40337073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:38-236
               
               
               Cow position:chrX:33151990-33151794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):50, 12

               
               
               Conread position:39-189
               
               
               Cow position:chrX:38218706-38218861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):40, 23

               
               
               Conread position:39-197
               
               
               Cow position:chrX:3806670-3806834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):20, 148

               
               
               Conread position:39-318
               
               
               Cow position:chrX:4037186-4036911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):17, 116

               
               
               Conread position:40-183
               
               
               Cow position:chrX:20678146-20678003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):70, 53

               
               
               Conread position:40-189
               
               
               Cow position:chrX:5679927-5679786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:40-198
               
               
               Cow position:chrX:42893916-42894079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):49, 146

               
               
               Conread position:40-213
               
               
               Cow position:chrX:29733603-29733422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:41-201
               
               
               Cow position:chrX:35275974-35276142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:43-188
               
               
               Cow position:chrX:11656076-11656225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):6, 20

               
               
               Conread position:43-206
               
               
               Cow position:chrX:35383041-35382877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):22, 7

               
               
               Conread position:44-201
               
               
               Cow position:chrX:39180237-39180077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):44, 107

               
               
               Conread position:45-178
               
               
               Cow position:chrX:16830220-16830354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):8, 47

               
               
               Conread position:45-192
               
               
               Cow position:chrX:46070175-46070020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:45-209
               
               
               Cow position:chrX:11653759-11653937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:45-209
               
               
               Cow position:chrX:34420732-34420898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:46-187
               
               
               Cow position:chrX:29478723-29478866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:46-193
               
               
               Cow position:chrX:30672401-30672241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:46-207
               
               
               Cow position:chrX:13121936-13122106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:46-207
               
               
               Cow position:chrX:14599535-14599695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 64

               
               
               Conread position:46-207
               
               
               Cow position:chrX:38587844-38587680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:46-208
               
               
               Cow position:chrX:42479832-42479996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:47-231
               
               
               Cow position:chrX:29501881-29501699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):30, 15

               
               
               Conread position:50-207
               
               
               Cow position:chrX:35658802-35658959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 14

               
               
               Conread position:50-215
               
               
               Cow position:chrX:19018829-19018660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:51-201
               
               
               Cow position:chrX:27668954-27668801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:51-299
               
               
               Cow position:chrX:9416680-9416434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):35, 28

               
               
               Conread position:53-310
               
               
               Cow position:chrX:27667438-27667674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):60, 26

               
               
               Conread position:54-209
               
               
               Cow position:chrX:16324008-16323855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 39

               
               
               Conread position:55-186
               
               
               Cow position:chrX:35392287-35392156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):38, 56

               
               
               Conread position:57-187
               
               
               Cow position:chrX:11762992-11762859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 127

               
               
               Conread position:57-188
               
               
               Cow position:chrX:42450005-42449870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:57-196
               
               
               Cow position:chrX:17524375-17524232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-204
               
               
               Cow position:chrX:1337270-1337134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:57-206
               
               
               Cow position:chrX:42506218-42506073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):36, 55

               
               
               Conread position:57-207
               
               
               Cow position:chrX:1122534-1122384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):36, 48

               
               
               Conread position:57-209
               
               
               Cow position:chrX:4559748-4559896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:57-247
               
               
               Cow position:chrX:25459725-25459519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:57-308
               
               
               Cow position:chrX:35285182-35285435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):27, 138

               
               
               Conread position:57-311
               
               
               Cow position:chrX:31829452-31829208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):27, 137

               
               
               Conread position:57-319
               
               
               Cow position:chrX:24170720-24170463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 87

               
               
               Conread position:58-206
               
               
               Cow position:chrX:11859527-11859375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 76

               
               
               Conread position:59-188
               
               
               Cow position:chrX:1719126-1719259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:59-227
               
               
               Cow position:chrX:36313995-36313825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):31, 151

               
               
               Conread position:59-309
               
               
               Cow position:chrX:21443714-21443464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):7, 58

               
               
               Conread position:60-188
               
               
               Cow position:chrX:47342128-47342259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:61-198
               
               
               Cow position:chrX:38301822-38301963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:61-223
               
               
               Cow position:chrX:753165-753333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):18, 138

               
               
               Conread position:61-311
               
               
               Cow position:chrX:47349529-47349771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):32, 87

               
               
               Conread position:62-201
               
               
               Cow position:chrX:25788891-25788748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:62-308
               
               
               Cow position:chrX:23266429-23266671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):31, 122

               
               
               Conread position:65-201
               
               
               Cow position:chrX:20345470-20345607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:65-204
               
               
               Cow position:chrX:19761771-19761914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:66-304
               
               
               Cow position:chrX:6223110-6222863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):22, 216

               
               
               Conread position:67-169
               
               
               Cow position:chrX:25210948-25211053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:67-188
               
               
               Cow position:chrX:10075992-10076115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:67-198
               
               
               Cow position:chrX:41810149-41810014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:67-207
               
               
               Cow position:chrX:32877356-32877214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 117

               
               
               Conread position:70-215
               
               
               Cow position:chrX:40355057-40355200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):21, 35

               
               
               Conread position:70-298
               
               
               Cow position:chrX:27296506-27296275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):23, 133

               
               
               Conread position:71-192
               
               
               Cow position:chrX:24054702-24054824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):11, 113

               
               
               Conread position:71-220
               
               
               Cow position:chrX:32235719-32235573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):19, 98

               
               
               Conread position:72-307
               
               
               Cow position:chrX:37062561-37062336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):21, 124

               
               
               Conread position:79-189
               
               
               Cow position:chrX:2551124-2551237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-198
               
               
               Cow position:chrX:48822309-48822189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):8, 103

               
               
               Conread position:79-204
               
               
               Cow position:chrX:37749950-37749824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-204
               
               
               Cow position:chrX:46909848-46909975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-206
               
               
               Cow position:chrX:4091957-4092086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-207
               
               
               Cow position:chrX:2314588-2314456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:79-207
               
               
               Cow position:chrX:17498355-17498485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:79-207
               
               
               Cow position:chrX:34270596-34270724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):31, 9

               
               
               Conread position:79-212
               
               
               Cow position:chrX:40648927-40649063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:79-221
               
               
               Cow position:chrX:4612849-4612709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):8, 92

               
               
               Conread position:79-237
               
               
               Cow position:chrX:11582258-11582413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:80-197
               
               
               Cow position:chrX:29563050-29562933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):13, 33

               
               
               Conread position:81-201
               
               
               Cow position:chrX:35409788-35409908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 65

               
               
               Conread position:82-197
               
               
               Cow position:chrX:20879278-20879163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):28, 76

               
               
               Conread position:82-207
               
               
               Cow position:chrX:35681604-35681729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):28, 99

               
               
               Conread position:82-301
               
               
               Cow position:chrX:23574691-23574913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):5, 45

               
               
               Conread position:86-183
               
               
               Cow position:chrX:17908109-17908011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:83
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-198
               
               
               Cow position:chrX:27415539-27415426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-201
               
               
               Cow position:chrX:27270416-27270533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:86-223
               
               
               Cow position:chrX:23860953-23860816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):24, 95

               
               
               Conread position:86-292
               
               
               Cow position:chrX:9855711-9855907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:86-304
               
               
               Cow position:chrX:11181155-11180926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:87-201
               
               
               Cow position:chrX:46068717-46068603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 94

               
               
               Conread position:88-304
               
               
               Cow position:chrX:41939866-41940077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):23, 93

               
               
               Conread position:89-198
               
               
               Cow position:chrX:42875256-42875366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:89-214
               
               
               Cow position:chrX:41435505-41435379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:92-195
               
               
               Cow position:chrX:44123302-44123406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:86
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:92-239
               
               
               Cow position:chrX:28876557-28876700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):18, 86

               
               
               Conread position:92-317
               
               
               Cow position:chrX:43014626-43014420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):14, 100

               
               
               Conread position:93-196
               
               
               Cow position:chrX:14002936-14002835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:85
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:93-312
               
               
               Cow position:chrX:2742293-2742067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):17, 78

               
               
               Conread position:94-201
               
               
               Cow position:chrX:10237864-10237757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):16, 85

               
               
               Conread position:94-311
               
               
               Cow position:chrX:25282989-25282779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 99

               
               
               Conread position:95-188
               
               
               Cow position:chrX:24547451-24547357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:81
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:95-307
               
               
               Cow position:chrX:7362773-7362564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):144, 14

               
               
               Conread position:96-222
               
               
               Cow position:chrX:7107553-7107679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):14, 85

               
               
               Conread position:97-204
               
               
               Cow position:chrX:40543469-40543363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 65

               
               
               Conread position:98-311
               
               
               Cow position:chrX:36039452-36039650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):12, 84

               
               
               Conread position:100-233
               
               
               Cow position:chrX:39418784-39418652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):13, 81

               
               
               Conread position:109-223
               
               
               Cow position:chrX:16481505-16481391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:109-303
               
               
               Cow position:chrX:4592437-4592259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:109-310
               
               
               Cow position:chrX:23182918-23182733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):69, 81

               
               
               Conread position:109-311
               
               
               Cow position:chrX:23187528-23187313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:110-235
               
               
               Cow position:chrX:25423996-25424119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:126-311
               
               
               Cow position:chrX:42482753-42482554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:132-310
               
               
               Cow position:chrX:27682753-27682931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):113, 8

               
               
               Conread position:137-304
               
               
               Cow position:chrX:27689181-27689339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:186-311
               
               
               Cow position:chrX:15545541-15545416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):56, 10

               
               
               Conread position:190-304
               
               
               Cow position:chrX:35848861-35848975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):67, 46

               
               
               Conread position:192-311
               
               
               Cow position:chrX:38226648-38226530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 0