Non-Coding RNA Search

Cow genome map


           Conread name:
           rcki26_b12.y1
        

               Conread position:
               7-356
               

               Cow position:
               chr1:53495067-53495423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 34
               

               Conread position:
               13-390
               

               Cow position:
               chr1:41004754-41004373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 21
               

               Conread position:
               33-359
               

               Cow position:
               chr1:18196487-18196819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               223
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               158, 216
               

               Conread position:
               33-359
               

               Cow position:
               chr1:52354783-52354452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               229
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               158, 29
               

               Conread position:
               33-397
               

               Cow position:
               chr1:9593524-9593163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               254
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               225, 140
               

               Conread position:
               34-299
               

               Cow position:
               chr1:54295032-54294763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               196
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               111, 218
               

               Conread position:
               34-329
               

               Cow position:
               chr1:40062079-40062376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               208
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               34-339
               

               Cow position:
               chr1:23623785-23624110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               19, 226
               

               Conread position:
               34-350
               

               Cow position:
               chr1:4026820-4027141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               229
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               154, 102
               

               Conread position:
               34-363
               

               Cow position:
               chr1:11854058-11853723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               232
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               153, 215
               

               Conread position:
               34-364
               

               Cow position:
               chr1:53397616-53397948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               230
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               146, 210
               

               Conread position:
               34-364
               

               Cow position:
               chr1:101551089-101551418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 215
               

               Conread position:
               34-368
               

               Cow position:
               chr1:93499255-93499590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 47
               

               Conread position:
               34-371
               

               Cow position:
               chr1:12596272-12595934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               244
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               108, 178
               

               Conread position:
               34-376
               

               Cow position:
               chr1:22728681-22729026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 55
               

               Conread position:
               34-376
               

               Cow position:
               chr1:58419556-58419912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               247
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               116, 226
               

               Conread position:
               34-382
               

               Cow position:
               chr1:41696693-41697039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               224, 120
               

               Conread position:
               34-382
               

               Cow position:
               chr1:84812318-84811961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               254
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               113, 228
               

               Conread position:
               34-383
               

               Cow position:
               chr1:31341422-31341068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 342
               

               Conread position:
               34-386
               

               Cow position:
               chr1:61725481-61725130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 215
               

               Conread position:
               35-307
               

               Cow position:
               chr1:50634778-50634499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               115, 66
               

               Conread position:
               35-307
               

               Cow position:
               chr1:92198410-92198674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               191
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               226, 12
               

               Conread position:
               35-333
               

               Cow position:
               chr1:33716854-33717156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               215
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               110, 30
               

               Conread position:
               35-345
               

               Cow position:
               chr1:22826800-22827110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               227
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               117, 96
               

               Conread position:
               35-347
               

               Cow position:
               chr1:14561318-14561000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               205
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               109, 217
               

               Conread position:
               35-355
               

               Cow position:
               chr1:64678342-64678649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               153, 65
               

               Conread position:
               35-359
               

               Cow position:
               chr1:68717347-68717021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               225
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               152, 99
               

               Conread position:
               35-361
               

               Cow position:
               chr1:51980860-51981183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 214
               

               Conread position:
               35-368
               

               Cow position:
               chr1:91817138-91816805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 104
               

               Conread position:
               35-382
               

               Cow position:
               chr1:68619286-68618952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               248
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               223, 102
               

               Conread position:
               35-383
               

               Cow position:
               chr1:31765761-31765407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 61
               

               Conread position:
               35-387
               

               Cow position:
               chr1:61564431-61564783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 27
               

               Conread position:
               35-397
               

               Cow position:
               chr1:92963023-92963389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               259
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               117, 215
               

               Conread position:
               40-300
               

               Cow position:
               chr1:2318000-2317743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               184
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               178, 73
               

               Conread position:
               40-362
               

               Cow position:
               chr1:3340568-3340896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               235
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               91, 219
               

               Conread position:
               40-362
               

               Cow position:
               chr1:90640670-90640992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               237
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               148, 64
               

               Conread position:
               40-367
               

               Cow position:
               chr1:61350791-61351111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               225
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               150, 94
               

               Conread position:
               40-370
               

               Cow position:
               chr1:11226607-11226277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 139
               

               Conread position:
               40-371
               

               Cow position:
               chr1:35162047-35162379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 37
               

               Conread position:
               40-380
               

               Cow position:
               chr1:62963922-62964254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               241
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               148, 13
               

               Conread position:
               41-315
               

               Cow position:
               chr1:61005923-61005652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               202
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               147, 95
               

               Conread position:
               41-368
               

               Cow position:
               chr1:79590739-79591074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 208
               

               Conread position:
               42-389
               

               Cow position:
               chr1:98551360-98551704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               246
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               146, 86
               

               Conread position:
               43-364
               

               Cow position:
               chr1:1801789-1802101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               228
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               264, 12
               

               Conread position:
               55-313
               

               Cow position:
               chr1:98494083-98494334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               184
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               203, 79
               

               Conread position:
               58-376
               

               Cow position:
               chr1:11772425-11772101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               223
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               130, 192
               

               Conread position:
               61-393
               

               Cow position:
               chr1:98562819-98563152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 148
               

               Conread position:
               73-377
               

               Cow position:
               chr1:7350209-7350517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               214
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               115, 176
               

               Conread position:
               80-368
               

               Cow position:
               chr1:95687423-95687136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               186, 99
               

               Conread position:
               80-376
               

               Cow position:
               chr1:95215498-95215206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               217
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               110, 24
               

               Conread position:
               82-329
               

               Cow position:
               chr1:90836323-90836075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               180
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               108, 59
               

               Conread position:
               87-397
               

               Cow position:
               chr1:65530219-65529906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               222
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               104, 162
               

               Conread position:
               88-364
               

               Cow position:
               chr1:73561963-73561687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 77
               

               Conread position:
               88-386
               

               Cow position:
               chr1:88652317-88652615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               221
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               100, 91
               

               Conread position:
               104-350
               

               Cow position:
               chr1:33811636-33811878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               83, 140
               

               Conread position:
               106-381
               

               Cow position:
               chr1:81613089-81613369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               82, 143
               

               Conread position:
               109-371
               

               Cow position:
               chr1:1991723-1991452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               193
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               41, 145
               

               Conread position:
               118-330
               

               Cow position:
               chr1:27358657-27358875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               32, 133
               

               Conread position:
               123-380
               

               Cow position:
               chr1:40599773-40600018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               181, 60
               

               Conread position:
               125-380
               

               Cow position:
               chr1:42968591-42968339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               63, 27
               

               Conread position:
               127-329
               

               Cow position:
               chr1:55686494-55686293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               150
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               66, 79
               

               Conread position:
               132-313
               

               Cow position:
               chr1:61742238-61742060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               132
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               48, 107
               

               Conread position:
               139-339
               

               Cow position:
               chr1:52488221-52488025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               59, 45
               

               Conread position:
               139-379
               

               Cow position:
               chr1:90864563-90864316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               49, 110
               

               Conread position:
               141-364
               

               Cow position:
               chr1:82338046-82337818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               162
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               34, 66
               

               Conread position:
               141-372
               

               Cow position:
               chr1:95327414-95327180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               46, 108
               

               Conread position:
               141-378
               

               Cow position:
               chr1:21835685-21835921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               11, 106
               

               Conread position:
               141-387
               

               Cow position:
               chr1:45535441-45535691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               186
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               117, 107
               

               Conread position:
               142-361
               

               Cow position:
               chr1:51628762-51628539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               159
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               48, 108
               

               Conread position:
               145-356
               

               Cow position:
               chr1:52994767-52994975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               153
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               43, 34
               

               Conread position:
               147-386
               

               Cow position:
               chr1:29935636-29935400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               45, 32
               

               Conread position:
               151-364
               

               Cow position:
               chr1:75967185-75967394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               37, 90
               

               Conread position:
               154-363
               

               Cow position:
               chr1:93528442-93528660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               32, 102
               

               Conread position:
               155-382
               

               Cow position:
               chr1:3244603-3244828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               158
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               36, 97
               

               Conread position:
               156-315
               

               Cow position:
               chr1:26159678-26159518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               118
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               31, 142
               

               Conread position:
               171-387
               

               Cow position:
               chr1:100393393-100393181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               7, 16
               

               Conread position:
               22-298
               

               Cow position:
               chr10:24096791-24096513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 228
               

               Conread position:
               22-364
               

               Cow position:
               chr10:48378043-48377708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 125
               

               Conread position:
               34-307
               

               Cow position:
               chr10:53973454-53973720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               202
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               237, 92
               

               Conread position:
               34-329
               

               Cow position:
               chr10:42230257-42230554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               220
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               16, 225
               

               Conread position:
               34-355
               

               Cow position:
               chr10:1427642-1427960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               108, 62
               

               Conread position:
               34-364
               

               Cow position:
               chr10:6516585-6516250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 123
               

               Conread position:
               34-367
               

               Cow position:
               chr10:22390198-22390526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               240
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               273, 131
               

               Conread position:
               34-371
               

               Cow position:
               chr10:22528299-22527965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 114
               

               Conread position:
               34-371
               

               Cow position:
               chr10:31401297-31400955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 215
               

               Conread position:
               34-379
               

               Cow position:
               chr10:28395682-28395357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               233
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               154, 56
               

               Conread position:
               34-386
               

               Cow position:
               chr10:1979072-1978713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               246
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               20, 286
               

               Conread position:
               34-386
               

               Cow position:
               chr10:11247580-11247928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               234, 145
               

               Conread position:
               34-386
               

               Cow position:
               chr10:15818191-15817837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 87
               

               Conread position:
               34-386
               

               Cow position:
               chr10:20446706-20447052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 66
               

               Conread position:
               34-386
               

               Cow position:
               chr10:37529679-37529309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 226
               

               Conread position:
               34-386
               

               Cow position:
               chr10:52278322-52278683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 221
               

               Conread position:
               34-395
               

               Cow position:
               chr10:11967246-11966883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               118, 107
               

               Conread position:
               34-397
               

               Cow position:
               chr10:32393623-32393987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               250
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               157, 129
               

               Conread position:
               35-350
               

               Cow position:
               chr10:36001808-36002117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 144
               

               Conread position:
               35-371
               

               Cow position:
               chr10:8922883-8923217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               232
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               223, 53
               

               Conread position:
               35-371
               

               Cow position:
               chr10:20372513-20372186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               234
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               153, 85
               

               Conread position:
               35-376
               

               Cow position:
               chr10:19678473-19678816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               244
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               153, 54
               

               Conread position:
               35-377
               

               Cow position:
               chr10:11009025-11009358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               239
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               108, 153
               

               Conread position:
               35-380
               

               Cow position:
               chr10:34661717-34661365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 149
               

               Conread position:
               35-381
               

               Cow position:
               chr10:35862627-35862273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               241
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               41, 118
               

               Conread position:
               35-397
               

               Cow position:
               chr10:13311337-13311697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               255
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               152, 105
               

               Conread position:
               35-397
               

               Cow position:
               chr10:37818957-37818593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 213
               

               Conread position:
               39-368
               

               Cow position:
               chr10:21657031-21657360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               229
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               229, 105
               

               Conread position:
               40-329
               

               Cow position:
               chr10:22321134-22321418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               210
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               218, 139
               

               Conread position:
               40-349
               

               Cow position:
               chr10:16598297-16598604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 15
               

               Conread position:
               40-387
               

               Cow position:
               chr10:31362599-31362258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 94
               

               Conread position:
               41-364
               

               Cow position:
               chr10:43451308-43450980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               237
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               66, 97
               

               Conread position:
               43-315
               

               Cow position:
               chr10:51305936-51306212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               100, 206
               

               Conread position:
               44-384
               

               Cow position:
               chr10:29816199-29816542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 137
               

               Conread position:
               54-362
               

               Cow position:
               chr10:40421222-40420912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 65
               

               Conread position:
               55-350
               

               Cow position:
               chr10:59675630-59675333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               207
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               203, 142
               

               Conread position:
               55-367
               

               Cow position:
               chr10:33067963-33067631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               235
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               130, 247
               

               Conread position:
               63-337
               

               Cow position:
               chr10:804824-805100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               197
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               85, 99
               

               Conread position:
               80-389
               

               Cow position:
               chr10:55733952-55733645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               222
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               108, 152
               

               Conread position:
               84-364
               

               Cow position:
               chr10:5543597-5543315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               207
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               96, 35
               

               Conread position:
               85-316
               

               Cow position:
               chr10:1749226-1749460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 91
               

               Conread position:
               99-364
               

               Cow position:
               chr10:66127523-66127795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               89, 151
               

               Conread position:
               105-300
               

               Cow position:
               chr10:21413823-21413629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               142
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               82, 54
               

               Conread position:
               113-362
               

               Cow position:
               chr10:54848458-54848707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               182
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               72, 87
               

               Conread position:
               125-386
               

               Cow position:
               chr10:54504296-54504560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               63, 22
               

               Conread position:
               126-321
               

               Cow position:
               chr10:69998252-69998057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               132, 26
               

               Conread position:
               128-371
               

               Cow position:
               chr10:34607253-34607499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               60, 121
               

               Conread position:
               136-313
               

               Cow position:
               chr10:39123998-39123820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               132
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               52, 113
               

               Conread position:
               141-362
               

               Cow position:
               chr10:35857346-35857124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               157
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               47, 57
               

               Conread position:
               141-371
               

               Cow position:
               chr10:15292980-15293207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               47, 68
               

               Conread position:
               141-383
               

               Cow position:
               chr10:60032869-60032618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               11, 40
               

               Conread position:
               142-329
               

               Cow position:
               chr10:26608179-26607991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               48, 107
               

               Conread position:
               142-376
               

               Cow position:
               chr10:11212822-11213057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               160
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               46, 17
               

               Conread position:
               144-382
               

               Cow position:
               chr10:23056367-23056130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               114, 39
               

               Conread position:
               147-363
               

               Cow position:
               chr10:49169342-49169121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               161
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               41, 32
               

               Conread position:
               147-364
               

               Cow position:
               chr10:9798479-9798265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               41, 95
               

               Conread position:
               147-364
               

               Cow position:
               chr10:37287463-37287242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               41, 102
               

               Conread position:
               148-357
               

               Cow position:
               chr10:37235836-37235624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               32, 38
               

               Conread position:
               148-361
               

               Cow position:
               chr10:41941865-41941647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               42, 101
               

               Conread position:
               148-362
               

               Cow position:
               chr10:57457047-57457266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               39, 101
               

               Conread position:
               148-380
               

               Cow position:
               chr10:29069871-29070111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               166
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               44, 103
               

               Conread position:
               148-387
               

               Cow position:
               chr10:34554373-34554137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               38, 101
               

               Conread position:
               148-387
               

               Cow position:
               chr10:52296213-52296452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               173
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               40, 31
               

               Conread position:
               156-387
               

               Cow position:
               chr10:37512525-37512290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               34, 93
               

               Conread position:
               159-329
               

               Cow position:
               chr10:25475305-25475476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               126
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               29, 90
               

               Conread position:
               159-371
               

               Cow position:
               chr10:25045956-25045748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               32, 82
               

               Conread position:
               159-377
               

               Cow position:
               chr10:53935013-53934790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               29, 49
               

               Conread position:
               159-381
               

               Cow position:
               chr10:11080684-11080912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               28, 83
               

               Conread position:
               187-364
               

               Cow position:
               chr10:28176638-28176459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               71, 61
               

               Conread position:
               21-300
               

               Cow position:
               chr11:55117066-55117346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 111
               

               Conread position:
               22-376
               

               Cow position:
               chr11:25336665-25337026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 231
               

               Conread position:
               33-299
               

               Cow position:
               chr11:18117894-18118159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               186
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               148, 158
               

               Conread position:
               33-368
               

               Cow position:
               chr11:951880-952211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               237
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               155, 75
               

               Conread position:
               34-316
               

               Cow position:
               chr11:83357002-83357283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 100
               

               Conread position:
               34-319
               

               Cow position:
               chr11:1849556-1849272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 90
               

               Conread position:
               34-329
               

               Cow position:
               chr11:37118091-37118389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 177
               

               Conread position:
               34-337
               

               Cow position:
               chr11:13061612-13061320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               217
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               154, 97
               

               Conread position:
               34-349
               

               Cow position:
               chr11:3303443-3303755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 215
               

               Conread position:
               34-361
               

               Cow position:
               chr11:41239665-41239335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               225, 146
               

               Conread position:
               34-364
               

               Cow position:
               chr11:62979084-62979427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 215
               

               Conread position:
               34-368
               

               Cow position:
               chr11:62750143-62749812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 145
               

               Conread position:
               34-371
               

               Cow position:
               chr11:10076381-10076713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               243
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               155, 195
               

               Conread position:
               34-371
               

               Cow position:
               chr11:16251649-16251301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 222
               

               Conread position:
               34-382
               

               Cow position:
               chr11:81174497-81174847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 145
               

               Conread position:
               34-386
               

               Cow position:
               chr11:8525495-8525152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               240
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               224, 19
               

               Conread position:
               34-387
               

               Cow position:
               chr11:50153210-50152853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 65
               

               Conread position:
               35-298
               

               Cow position:
               chr11:76767973-76768236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               151, 146
               

               Conread position:
               35-312
               

               Cow position:
               chr11:29013994-29014280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               190
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               102, 167
               

               Conread position:
               35-337
               

               Cow position:
               chr11:4412412-4412105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               219
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               146, 216
               

               Conread position:
               35-361
               

               Cow position:
               chr11:44637153-44636822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               232
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               153, 200
               

               Conread position:
               35-364
               

               Cow position:
               chr11:17321269-17321598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               272, 148
               

               Conread position:
               35-364
               

               Cow position:
               chr11:35363104-35363437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 53
               

               Conread position:
               35-371
               

               Cow position:
               chr11:48271809-48272143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 28
               

               Conread position:
               35-380
               

               Cow position:
               chr11:40467514-40467161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 37
               

               Conread position:
               35-381
               

               Cow position:
               chr11:64029648-64029306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               272, 213
               

               Conread position:
               40-334
               

               Cow position:
               chr11:22103375-22103661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 139
               

               Conread position:
               40-363
               

               Cow position:
               chr11:30879290-30879615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               230
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               112, 213
               

               Conread position:
               40-364
               

               Cow position:
               chr11:7589805-7590132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               147, 87
               

               Conread position:
               40-390
               

               Cow position:
               chr11:42793346-42793008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               247
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               148, 13
               

               Conread position:
               40-394
               

               Cow position:
               chr11:43897748-43898108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 211
               

               Conread position:
               41-386
               

               Cow position:
               chr11:69118914-69119254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 14
               

               Conread position:
               42-387
               

               Cow position:
               chr11:3833733-3833393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 198
               

               Conread position:
               43-363
               

               Cow position:
               chr11:5032161-5031836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 136
               

               Conread position:
               44-382
               

               Cow position:
               chr11:67746894-67747241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               241
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               133, 170
               

               Conread position:
               48-359
               

               Cow position:
               chr11:49170939-49170630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               218, 141
               

               Conread position:
               50-355
               

               Cow position:
               chr11:33350079-33349766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 199
               

               Conread position:
               54-415
               

               Cow position:
               chr11:3780806-3780436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               250
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               47, 205
               

               Conread position:
               55-381
               

               Cow position:
               chr11:65409534-65409200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               228
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               86, 198
               

               Conread position:
               55-404
               

               Cow position:
               chr11:2091975-2092310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 139
               

               Conread position:
               65-386
               

               Cow position:
               chr11:42016996-42016672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               230
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               123, 27
               

               Conread position:
               69-387
               

               Cow position:
               chr11:70609431-70609749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               222
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               27, 66
               

               Conread position:
               70-351
               

               Cow position:
               chr11:64090443-64090158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               118, 74
               

               Conread position:
               73-376
               

               Cow position:
               chr11:35684853-35684544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               223
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               102, 177
               

               Conread position:
               80-349
               

               Cow position:
               chr11:81614976-81614713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               199
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               223, 61
               

               Conread position:
               96-336
               

               Cow position:
               chr11:73924890-73924653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               92, 146
               

               Conread position:
               105-382
               

               Cow position:
               chr11:30120985-30120709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               77, 58
               

               Conread position:
               110-329
               

               Cow position:
               chr11:60302275-60302059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               79, 139
               

               Conread position:
               115-333
               

               Cow position:
               chr11:35238516-35238738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               73, 134
               

               Conread position:
               115-364
               

               Cow position:
               chr11:32595154-32595407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               187
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               73, 134
               

               Conread position:
               130-383
               

               Cow position:
               chr11:1485658-1485399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               58, 119
               

               Conread position:
               130-386
               

               Cow position:
               chr11:87155215-87155481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               188
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               44, 78
               

               Conread position:
               136-351
               

               Cow position:
               chr11:24601674-24601899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               5, 118
               

               Conread position:
               138-337
               

               Cow position:
               chr11:8988519-8988319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               50, 105
               

               Conread position:
               141-381
               

               Cow position:
               chr11:25165159-25165397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               47, 39
               

               Conread position:
               141-387
               

               Cow position:
               chr11:58103061-58102814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               48, 108
               

               Conread position:
               142-371
               

               Cow position:
               chr11:67804465-67804698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               12, 38
               

               Conread position:
               143-381
               

               Cow position:
               chr11:37347191-37347435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               45, 24
               

               Conread position:
               148-342
               

               Cow position:
               chr11:3282779-3282963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               151, 37
               

               Conread position:
               152-368
               

               Cow position:
               chr11:55052597-55052821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               26, 157
               

               Conread position:
               154-371
               

               Cow position:
               chr11:62155357-62155573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               104, 29
               

               Conread position:
               159-378
               

               Cow position:
               chr11:24937394-24937616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               29, 20
               

               Conread position:
               187-371
               

               Cow position:
               chr11:47899037-47899225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               139
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               120, 110
               

               Conread position:
               189-390
               

               Cow position:
               chr11:2925529-2925326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               21, 60
               

               Conread position:
               31-364
               

               Cow position:
               chr12:40910708-40910373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 235
               

               Conread position:
               33-359
               

               Cow position:
               chr12:31328492-31328164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               223
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               158, 130
               

               Conread position:
               33-359
               

               Cow position:
               chr12:42061267-42061596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               224
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               158, 80
               

               Conread position:
               34-312
               

               Cow position:
               chr12:27055193-27055472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               42, 176
               

               Conread position:
               34-313
               

               Cow position:
               chr12:30605556-30605289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               154, 62
               

               Conread position:
               34-329
               

               Cow position:
               chr12:4593682-4593983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               110, 120
               

               Conread position:
               34-363
               

               Cow position:
               chr12:7977640-7977952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               238
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               54, 69
               

               Conread position:
               34-380
               

               Cow position:
               chr12:3950748-3950412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               238
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               154, 98
               

               Conread position:
               34-388
               

               Cow position:
               chr12:3578871-3579228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               248
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               113, 89
               

               Conread position:
               34-390
               

               Cow position:
               chr12:18421339-18420978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               265, 276
               

               Conread position:
               34-393
               

               Cow position:
               chr12:6719911-6720271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               248
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               109, 77
               

               Conread position:
               35-298
               

               Cow position:
               chr12:45555829-45555569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               167, 112
               

               Conread position:
               35-364
               

               Cow position:
               chr12:36501359-36501028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               236
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               260, 121
               

               Conread position:
               35-371
               

               Cow position:
               chr12:11582994-11583320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 117
               

               Conread position:
               35-371
               

               Cow position:
               chr12:30578871-30578529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               227
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               152, 214
               

               Conread position:
               35-382
               

               Cow position:
               chr12:29969167-29969514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               234
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               223, 155
               

               Conread position:
               35-386
               

               Cow position:
               chr12:9142982-9143328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 29
               

               Conread position:
               40-300
               

               Cow position:
               chr12:19420338-19420086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               196
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               148, 44
               

               Conread position:
               40-363
               

               Cow position:
               chr12:6240900-6241228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 211
               

               Conread position:
               40-384
               

               Cow position:
               chr12:39486026-39486366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 57
               

               Conread position:
               40-387
               

               Cow position:
               chr12:47928809-47929153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               244
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               62, 69
               

               Conread position:
               43-371
               

               Cow position:
               chr12:20326371-20326699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               225, 63
               

               Conread position:
               43-381
               

               Cow position:
               chr12:45814668-45814321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 136
               

               Conread position:
               44-371
               

               Cow position:
               chr12:27803447-27803128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               230
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               147, 92
               

               Conread position:
               49-350
               

               Cow position:
               chr12:24046334-24046028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               207, 199
               

               Conread position:
               60-390
               

               Cow position:
               chr12:17000875-17001207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               235
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               128, 83
               

               Conread position:
               80-314
               

               Cow position:
               chr12:31060346-31060112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               106, 13
               

               Conread position:
               80-364
               

               Cow position:
               chr12:41580750-41581036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               200
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               178, 99
               

               Conread position:
               88-421
               

               Cow position:
               chr12:18937030-18937374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               246
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               99, 26
               

               Conread position:
               97-332
               

               Cow position:
               chr12:12976536-12976295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               90, 158
               

               Conread position:
               123-350
               

               Cow position:
               chr12:44905313-44905547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               65, 56
               

               Conread position:
               130-381
               

               Cow position:
               chr12:11056559-11056809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               57, 112
               

               Conread position:
               132-311
               

               Cow position:
               chr12:35771348-35771167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               132-387
               

               Cow position:
               chr12:26782566-26782824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               190
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               56, 117
               

               Conread position:
               136-385
               

               Cow position:
               chr12:30805543-30805793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               178
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               5, 123
               

               Conread position:
               139-333
               

               Cow position:
               chr12:3076931-3076733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               49, 110
               

               Conread position:
               141-377
               

               Cow position:
               chr12:30590471-30590698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               46, 38
               

               Conread position:
               141-387
               

               Cow position:
               chr12:3055828-3056073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               11, 111
               

               Conread position:
               144-350
               

               Cow position:
               chr12:3510262-3510471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               114, 37
               

               Conread position:
               147-337
               

               Cow position:
               chr12:40307396-40307587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               138
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               41, 102
               

               Conread position:
               148-381
               

               Cow position:
               chr12:32169237-32169474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               162
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               32, 15
               

               Conread position:
               151-350
               

               Cow position:
               chr12:25455818-25456023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               39, 99
               

               Conread position:
               160-337
               

               Cow position:
               chr12:23154753-23154573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               28, 19
               

               Conread position:
               163-383
               

               Cow position:
               chr12:18388566-18388351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               24, 86
               

               Conread position:
               187-387
               

               Cow position:
               chr12:17702492-17702286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               71, 61
               

               Conread position:
               208-387
               

               Cow position:
               chr12:24211178-24211353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               130
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               50, 38
               

               Conread position:
               24-396
               

               Cow position:
               chr13:55371794-55372165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               257
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               167, 17
               

               Conread position:
               29-314
               

               Cow position:
               chr13:41360114-41359833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               134, 74
               

               Conread position:
               33-316
               

               Cow position:
               chr13:30794181-30793897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               206
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               160, 99
               

               Conread position:
               34-300
               

               Cow position:
               chr13:24695723-24695461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               190
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               159, 36
               

               Conread position:
               34-300
               

               Cow position:
               chr13:25453530-25453263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               190
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               154, 216
               

               Conread position:
               34-354
               

               Cow position:
               chr13:40943602-40943283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               224, 24
               

               Conread position:
               34-360
               

               Cow position:
               chr13:12977919-12977599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               236
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               154, 100
               

               Conread position:
               34-364
               

               Cow position:
               chr13:49805327-49804999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               225, 9
               

               Conread position:
               34-366
               

               Cow position:
               chr13:51941089-51940764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               240
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               157, 146
               

               Conread position:
               34-368
               

               Cow position:
               chr13:17820902-17821243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               249
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               154, 14
               

               Conread position:
               34-370
               

               Cow position:
               chr13:27027418-27027751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               245
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               224, 15
               

               Conread position:
               34-377
               

               Cow position:
               chr13:53566943-53566611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               246
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               154, 7
               

               Conread position:
               34-386
               

               Cow position:
               chr13:34282040-34281682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               249
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               154, 215
               

               Conread position:
               34-387
               

               Cow position:
               chr13:56686791-56686439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 208
               

               Conread position:
               34-390
               

               Cow position:
               chr13:10928633-10928990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               242
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               156, 100
               

               Conread position:
               35-371
               

               Cow position:
               chr13:21276215-21275879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 215
               

               Conread position:
               35-380
               

               Cow position:
               chr13:60690360-60690715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 131
               

               Conread position:
               35-383
               

               Cow position:
               chr13:6945732-6945376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               156, 215
               

               Conread position:
               35-488
               

               Cow position:
               chr13:3003803-3003338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 99
               

               Conread position:
               40-329
               

               Cow position:
               chr13:13261369-13261072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               40-371
               

               Cow position:
               chr13:61170370-61170699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               242
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               148, 107
               

               Conread position:
               40-382
               

               Cow position:
               chr13:17800428-17800083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               239
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               88, 69
               

               Conread position:
               43-319
               

               Cow position:
               chr13:21988754-21989028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               192
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               145, 91
               

               Conread position:
               51-386
               

               Cow position:
               chr13:13266144-13265813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 128
               

               Conread position:
               55-387
               

               Cow position:
               chr13:12448649-12448989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               242
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               97, 126
               

               Conread position:
               58-383
               

               Cow position:
               chr13:33517572-33517914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               241
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               62, 199
               

               Conread position:
               64-300
               

               Cow position:
               chr13:4208488-4208721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               194, 67
               

               Conread position:
               65-300
               

               Cow position:
               chr13:15920802-15920568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               166
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               126, 66
               

               Conread position:
               80-371
               

               Cow position:
               chr13:27524948-27525243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 99
               

               Conread position:
               80-387
               

               Cow position:
               chr13:37382125-37381807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               81-388
               

               Cow position:
               chr13:15172096-15172408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               223
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               108, 66
               

               Conread position:
               82-312
               

               Cow position:
               chr13:35853040-35853265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               105, 73
               

               Conread position:
               82-335
               

               Cow position:
               chr13:56148852-56148598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               61, 98
               

               Conread position:
               82-335
               

               Cow position:
               chr13:56160115-56160369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               61, 98
               

               Conread position:
               84-333
               

               Cow position:
               chr13:13306412-13306159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               190
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               104, 19
               

               Conread position:
               84-376
               

               Cow position:
               chr13:20813973-20814263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               220
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               104, 50
               

               Conread position:
               84-376
               

               Cow position:
               chr13:20816620-20816330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               220
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               104, 50
               

               Conread position:
               88-352
               

               Cow position:
               chr13:14927543-14927276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               201
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               100, 75
               

               Conread position:
               90-339
               

               Cow position:
               chr13:15740367-15740119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               166, 44
               

               Conread position:
               90-386
               

               Cow position:
               chr13:32283423-32283134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               98, 26
               

               Conread position:
               96-388
               

               Cow position:
               chr13:25817811-25817533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               210
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               95, 146
               

               Conread position:
               128-364
               

               Cow position:
               chr13:18166996-18166762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               60, 121
               

               Conread position:
               141-367
               

               Cow position:
               chr13:21210115-21209886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               161
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               24, 18
               

               Conread position:
               141-371
               

               Cow position:
               chr13:26261541-26261777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               46, 108
               

               Conread position:
               141-371
               

               Cow position:
               chr13:38012616-38012379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               10, 110
               

               Conread position:
               144-390
               

               Cow position:
               chr13:24586298-24586045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               7, 157
               

               Conread position:
               147-371
               

               Cow position:
               chr13:8201238-8201461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               31, 103
               

               Conread position:
               148-387
               

               Cow position:
               chr13:45022962-45023205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               41, 23
               

               Conread position:
               149-400
               

               Cow position:
               chr13:54331264-54331010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               38, 100
               

               Conread position:
               150-376
               

               Cow position:
               chr13:44323147-44322921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               30, 100
               

               Conread position:
               151-382
               

               Cow position:
               chr13:24376733-24376505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               37, 98
               

               Conread position:
               151-383
               

               Cow position:
               chr13:20705960-20706197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               37, 30
               

               Conread position:
               151-393
               

               Cow position:
               chr13:55673962-55674207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               178
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               37, 98
               

               Conread position:
               154-377
               

               Cow position:
               chr13:7076496-7076274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               35, 96
               

               Conread position:
               156-367
               

               Cow position:
               chr13:42200856-42200645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               152
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               35, 23
               

               Conread position:
               160-386
               

               Cow position:
               chr13:24369819-24369588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               168
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               29, 90
               

               Conread position:
               173-371
               

               Cow position:
               chr13:54344997-54344792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               15, 77
               

               Conread position:
               187-329
               

               Cow position:
               chr13:33054189-33054328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               110
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               71, 17
               

               Conread position:
               187-361
               

               Cow position:
               chr13:51014974-51015155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               139
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               79, 61
               

               Conread position:
               13-364
               

               Cow position:
               chr14:46489818-46490174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               253, 42
               

               Conread position:
               21-376
               

               Cow position:
               chr14:41211298-41210929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 13
               

               Conread position:
               33-316
               

               Cow position:
               chr14:13768795-13768510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               195
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               158, 216
               

               Conread position:
               33-337
               

               Cow position:
               chr14:36554739-36555043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               223
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               155, 14
               

               Conread position:
               33-397
               

               Cow position:
               chr14:12739549-12739184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               248
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               158, 108
               

               Conread position:
               33-397
               

               Cow position:
               chr14:28137977-28137611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               251
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               154, 209
               

               Conread position:
               34-329
               

               Cow position:
               chr14:29010660-29010364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               208
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               159, 20
               

               Conread position:
               34-330
               

               Cow position:
               chr14:41749354-41749633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               208
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               34-337
               

               Cow position:
               chr14:20666603-20666909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               223
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               23, 149
               

               Conread position:
               34-353
               

               Cow position:
               chr14:35650784-35651108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               232
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               111, 169
               

               Conread position:
               34-371
               

               Cow position:
               chr14:25779513-25779176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 21
               

               Conread position:
               34-380
               

               Cow position:
               chr14:24417302-24416956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 169
               

               Conread position:
               34-382
               

               Cow position:
               chr14:20640203-20640559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 218
               

               Conread position:
               34-382
               

               Cow position:
               chr14:21285040-21284691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               248
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               234, 53
               

               Conread position:
               34-417
               

               Cow position:
               chr14:2938060-2937682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               253
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               159, 23
               

               Conread position:
               35-298
               

               Cow position:
               chr14:38239988-38239731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               109, 148
               

               Conread position:
               35-307
               

               Cow position:
               chr14:31399999-31399718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               192
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               111, 226
               

               Conread position:
               35-336
               

               Cow position:
               chr14:43250001-43249697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 124
               

               Conread position:
               35-337
               

               Cow position:
               chr14:27791951-27791642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 267
               

               Conread position:
               35-363
               

               Cow position:
               chr14:33538512-33538836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 128
               

               Conread position:
               35-364
               

               Cow position:
               chr14:50363213-50362881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               241
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               193, 146
               

               Conread position:
               35-368
               

               Cow position:
               chr14:46735733-46735386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               242
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               112, 70
               

               Conread position:
               35-371
               

               Cow position:
               chr14:28090558-28090897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 112
               

               Conread position:
               35-377
               

               Cow position:
               chr14:27848617-27848274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 214
               

               Conread position:
               35-380
               

               Cow position:
               chr14:14326688-14327039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 61
               

               Conread position:
               35-387
               

               Cow position:
               chr14:39779163-39778815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 27
               

               Conread position:
               40-371
               

               Cow position:
               chr14:28378773-28378439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               241
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               149, 94
               

               Conread position:
               40-417
               

               Cow position:
               chr14:44382786-44383169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               261
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               55, 156
               

               Conread position:
               42-333
               

               Cow position:
               chr14:47507514-47507219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 208
               

               Conread position:
               43-382
               

               Cow position:
               chr14:26432841-26433172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               229
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               145, 59
               

               Conread position:
               55-300
               

               Cow position:
               chr14:24980289-24980044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               136, 194
               

               Conread position:
               55-381
               

               Cow position:
               chr14:42154565-42154895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               133, 52
               

               Conread position:
               64-332
               

               Cow position:
               chr14:3107247-3107515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               125, 18
               

               Conread position:
               80-299
               

               Cow position:
               chr14:11056586-11056369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               168, 0
               

               Conread position:
               80-335
               

               Cow position:
               chr14:42330724-42330468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               188
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               108, 23
               

               Conread position:
               85-387
               

               Cow position:
               chr14:5836268-5835970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               209
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               61, 10
               

               Conread position:
               87-359
               

               Cow position:
               chr14:47588704-47588427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               187
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               104, 162
               

               Conread position:
               87-368
               

               Cow position:
               chr14:7317201-7316909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               214
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               101, 163
               

               Conread position:
               98-361
               

               Cow position:
               chr14:11507888-11508156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               20, 152
               

               Conread position:
               105-333
               

               Cow position:
               chr14:7291138-7290919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               83, 18
               

               Conread position:
               111-381
               

               Cow position:
               chr14:18345393-18345662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               186
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               141, 18
               

               Conread position:
               127-371
               

               Cow position:
               chr14:43036202-43035963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               163
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               61, 20
               

               Conread position:
               147-350
               

               Cow position:
               chr14:36709427-36709220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               41, 32
               

               Conread position:
               148-382
               

               Cow position:
               chr14:41128194-41127962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               173
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               110, 36
               

               Conread position:
               148-383
               

               Cow position:
               chr14:33714384-33714610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               40, 94
               

               Conread position:
               154-381
               

               Cow position:
               chr14:11819826-11820056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               33, 95
               

               Conread position:
               2-368
               

               Cow position:
               chr15:43626951-43626595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 29
               

               Conread position:
               32-359
               

               Cow position:
               chr15:7578661-7578993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               231
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               161, 147
               

               Conread position:
               33-300
               

               Cow position:
               chr15:4642704-4642972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               158, 216
               

               Conread position:
               34-300
               

               Cow position:
               chr15:23798058-23798323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               191
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               155, 108
               

               Conread position:
               34-329
               

               Cow position:
               chr15:24821914-24822207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               55, 152
               

               Conread position:
               34-329
               

               Cow position:
               chr15:38898885-38898592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               204
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               153, 73
               

               Conread position:
               34-333
               

               Cow position:
               chr15:41087399-41087698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 145
               

               Conread position:
               34-339
               

               Cow position:
               chr15:13669441-13669741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 71
               

               Conread position:
               34-349
               

               Cow position:
               chr15:33976229-33976539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 207
               

               Conread position:
               34-361
               

               Cow position:
               chr15:9062112-9062460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               244
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               101, 233
               

               Conread position:
               34-371
               

               Cow position:
               chr15:794554-794889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               237
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               157, 100
               

               Conread position:
               34-371
               

               Cow position:
               chr15:29792462-29792784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               229
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               154, 95
               

               Conread position:
               34-376
               

               Cow position:
               chr15:30047072-30047421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 215
               

               Conread position:
               34-377
               

               Cow position:
               chr15:5234541-5234882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 145
               

               Conread position:
               34-377
               

               Cow position:
               chr15:40797970-40798312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               242
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               55, 77
               

               Conread position:
               34-383
               

               Cow position:
               chr15:6970441-6970101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               234, 41
               

               Conread position:
               34-383
               

               Cow position:
               chr15:20370008-20370344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               250
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               273, 73
               

               Conread position:
               34-386
               

               Cow position:
               chr15:1329642-1329992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               242
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               157, 108
               

               Conread position:
               35-294
               

               Cow position:
               chr15:37716476-37716718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               223, 69
               

               Conread position:
               35-305
               

               Cow position:
               chr15:12359717-12359442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               196
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               60, 37
               

               Conread position:
               35-307
               

               Cow position:
               chr15:16741573-16741847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               145, 216
               

               Conread position:
               35-362
               

               Cow position:
               chr15:1082924-1083241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               206, 99
               

               Conread position:
               35-362
               

               Cow position:
               chr15:1128445-1128129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               229
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               206, 95
               

               Conread position:
               35-362
               

               Cow position:
               chr15:7430445-7430111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 113
               

               Conread position:
               35-370
               

               Cow position:
               chr15:4138593-4138258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               236
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               153, 65
               

               Conread position:
               35-371
               

               Cow position:
               chr15:20533987-20534318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 120
               

               Conread position:
               35-382
               

               Cow position:
               chr15:15881383-15881043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 19
               

               Conread position:
               35-382
               

               Cow position:
               chr15:18720777-18720424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               240
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               155, 214
               

               Conread position:
               36-337
               

               Cow position:
               chr15:14505889-14505587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 190
               

               Conread position:
               40-381
               

               Cow position:
               chr15:22532692-22532354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               246
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               24, 38
               

               Conread position:
               40-383
               

               Cow position:
               chr15:41583366-41583023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               245
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               42, 58
               

               Conread position:
               44-380
               

               Cow position:
               chr15:23703218-23702891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               238
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               144, 76
               

               Conread position:
               44-380
               

               Cow position:
               chr15:25208313-25208646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 79
               

               Conread position:
               48-382
               

               Cow position:
               chr15:20486757-20487091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               245
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               48, 202
               

               Conread position:
               51-337
               

               Cow position:
               chr15:16543017-16543294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 196
               

               Conread position:
               51-380
               

               Cow position:
               chr15:26896274-26896591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               231
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               137, 90
               

               Conread position:
               54-383
               

               Cow position:
               chr15:22751893-22751562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               242
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               6, 77
               

               Conread position:
               55-336
               

               Cow position:
               chr15:18284685-18284401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               198
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               88, 125
               

               Conread position:
               55-361
               

               Cow position:
               chr15:25584637-25584953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 203
               

               Conread position:
               80-337
               

               Cow position:
               chr15:40999634-40999907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               42, 47
               

               Conread position:
               81-328
               

               Cow position:
               chr15:20267057-20266808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               112, 129
               

               Conread position:
               84-361
               

               Cow position:
               chr15:53102002-53101723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               198
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               182, 101
               

               Conread position:
               87-359
               

               Cow position:
               chr15:19733773-19733499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               106, 77
               

               Conread position:
               92-321
               

               Cow position:
               chr15:10450499-10450724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               96, 78
               

               Conread position:
               125-363
               

               Cow position:
               chr15:17084583-17084349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               63, 34
               

               Conread position:
               129-316
               

               Cow position:
               chr15:15846202-15846014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               64, 123
               

               Conread position:
               141-333
               

               Cow position:
               chr15:33303690-33303496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               47, 76
               

               Conread position:
               148-362
               

               Cow position:
               chr15:17100366-17100576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               159, 37
               

               Conread position:
               148-363
               

               Cow position:
               chr15:14020821-14020606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               40, 69
               

               Conread position:
               148-364
               

               Cow position:
               chr15:38883507-38883284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               7, 102
               

               Conread position:
               149-371
               

               Cow position:
               chr15:35642369-35642144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               39, 93
               

               Conread position:
               151-362
               

               Cow position:
               chr15:39406081-39405872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               37, 28
               

               Conread position:
               160-371
               

               Cow position:
               chr15:31857930-31857714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               28, 89
               

               Conread position:
               163-371
               

               Cow position:
               chr15:39599775-39599567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               25, 86
               

               Conread position:
               173-386
               

               Cow position:
               chr15:50322920-50322705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               155
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               15, 76
               

               Conread position:
               187-313
               

               Cow position:
               chr15:33243468-33243341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               100
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               71, 62
               

               Conread position:
               23-299
               

               Cow position:
               chr16:45173935-45173660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 97
               

               Conread position:
               23-359
               

               Cow position:
               chr16:29051281-29051625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               236
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               112, 17
               

               Conread position:
               33-299
               

               Cow position:
               chr16:30018825-30019087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               186
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               213, 154
               

               Conread position:
               33-301
               

               Cow position:
               chr16:39033195-39032927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               190
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               158, 219
               

               Conread position:
               33-359
               

               Cow position:
               chr16:23532845-23532513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               227
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               158, 148
               

               Conread position:
               33-359
               

               Cow position:
               chr16:48520081-48520413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               236
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               156, 174
               

               Conread position:
               33-383
               

               Cow position:
               chr16:16265473-16265124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               243
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               86, 91
               

               Conread position:
               33-397
               

               Cow position:
               chr16:2724069-2723698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               250
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               154, 221
               

               Conread position:
               33-397
               

               Cow position:
               chr16:28467967-28467601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               250
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               158, 216
               

               Conread position:
               34-284
               

               Cow position:
               chr16:33458386-33458128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               140, 220
               

               Conread position:
               34-337
               

               Cow position:
               chr16:30638964-30639270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               122, 219
               

               Conread position:
               34-361
               

               Cow position:
               chr16:9973868-9973545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               233
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               154, 63
               

               Conread position:
               34-364
               

               Cow position:
               chr16:49125895-49125572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               239
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               154, 144
               

               Conread position:
               34-371
               

               Cow position:
               chr16:17142562-17142902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               243
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               108, 46
               

               Conread position:
               34-371
               

               Cow position:
               chr16:30143589-30143241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 147
               

               Conread position:
               34-376
               

               Cow position:
               chr16:50189963-50189621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               242
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               156, 118
               

               Conread position:
               34-382
               

               Cow position:
               chr16:49169754-49169410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               247
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               160, 103
               

               Conread position:
               34-382
               

               Cow position:
               chr16:51500558-51500905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               252
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               154, 82
               

               Conread position:
               34-386
               

               Cow position:
               chr16:45139293-45139650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 147
               

               Conread position:
               34-390
               

               Cow position:
               chr16:40561851-40562215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 216
               

               Conread position:
               34-390
               

               Cow position:
               chr16:56231448-56231809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               251
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               155, 215
               

               Conread position:
               35-362
               

               Cow position:
               chr16:49230144-49229818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               238
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               140, 99
               

               Conread position:
               35-363
               

               Cow position:
               chr16:22804947-22804643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               153, 78
               

               Conread position:
               35-371
               

               Cow position:
               chr16:3633742-3634074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               236
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               155, 107
               

               Conread position:
               35-371
               

               Cow position:
               chr16:56913086-56912753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               231
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               153, 40
               

               Conread position:
               35-380
               

               Cow position:
               chr16:42218067-42217714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               244
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               108, 217
               

               Conread position:
               35-383
               

               Cow position:
               chr16:13307239-13306891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 100
               

               Conread position:
               39-364
               

               Cow position:
               chr16:13698138-13698469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 210
               

               Conread position:
               40-307
               

               Cow position:
               chr16:30909283-30909032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               145, 18
               

               Conread position:
               40-317
               

               Cow position:
               chr16:5293289-5293569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               208
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               11, 144
               

               Conread position:
               40-329
               

               Cow position:
               chr16:56853585-56853876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               148, 139
               

               Conread position:
               40-381
               

               Cow position:
               chr16:50418059-50417715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               229
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               14, 276
               

               Conread position:
               40-386
               

               Cow position:
               chr16:54578803-54579142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 96
               

               Conread position:
               41-335
               

               Cow position:
               chr16:9948418-9948718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               200
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               101, 213
               

               Conread position:
               41-351
               

               Cow position:
               chr16:51578779-51578474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               229
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               139, 34
               

               Conread position:
               42-300
               

               Cow position:
               chr16:23248799-23248541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               151, 207
               

               Conread position:
               42-330
               

               Cow position:
               chr16:45233972-45234260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               206
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               125, 138
               

               Conread position:
               43-362
               

               Cow position:
               chr16:4103525-4103205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 10
               

               Conread position:
               45-406
               

               Cow position:
               chr16:8651993-8652356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               248
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               146, 204
               

               Conread position:
               51-364
               

               Cow position:
               chr16:51113232-51112920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               224
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               137, 68
               

               Conread position:
               55-364
               

               Cow position:
               chr16:35757863-35758161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               213
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               246, 79
               

               Conread position:
               58-375
               

               Cow position:
               chr16:39514435-39514109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               233
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               93, 168
               

               Conread position:
               70-343
               

               Cow position:
               chr16:11790662-11790951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               69, 191
               

               Conread position:
               73-364
               

               Cow position:
               chr16:9932819-9933115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               220
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               30, 176
               

               Conread position:
               73-373
               

               Cow position:
               chr16:4293379-4293681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               117, 47
               

               Conread position:
               73-383
               

               Cow position:
               chr16:30715156-30715470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               222
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               115, 176
               

               Conread position:
               80-368
               

               Cow position:
               chr16:33645691-33645973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               108, 25
               

               Conread position:
               82-308
               

               Cow position:
               chr16:15762490-15762263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               107, 167
               

               Conread position:
               82-364
               

               Cow position:
               chr16:15808645-15808931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               203
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               25, 75
               

               Conread position:
               87-364
               

               Cow position:
               chr16:11621125-11620852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 155
               

               Conread position:
               95-398
               

               Cow position:
               chr16:42253883-42253576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               105, 10
               

               Conread position:
               96-371
               

               Cow position:
               chr16:42242431-42242152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               206
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               92, 105
               

               Conread position:
               104-364
               

               Cow position:
               chr16:19003822-19003567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               188
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               72, 37
               

               Conread position:
               104-386
               

               Cow position:
               chr16:53627725-53627449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               84, 29
               

               Conread position:
               120-371
               

               Cow position:
               chr16:43506089-43505839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               28, 92
               

               Conread position:
               128-306
               

               Cow position:
               chr16:15320752-15320573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               24, 83
               

               Conread position:
               132-371
               

               Cow position:
               chr16:39417384-39417154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               175, 20
               

               Conread position:
               140-371
               

               Cow position:
               chr16:20025177-20025410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               49, 12
               

               Conread position:
               140-386
               

               Cow position:
               chr16:24672628-24672378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               178
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               45, 39
               

               Conread position:
               141-364
               

               Cow position:
               chr16:52889678-52889454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               164
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               47, 114
               

               Conread position:
               147-371
               

               Cow position:
               chr16:43308823-43308598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               161
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               119, 32
               

               Conread position:
               150-378
               

               Cow position:
               chr16:5256744-5256964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               38, 53
               

               Conread position:
               150-381
               

               Cow position:
               chr16:35623509-35623269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               34, 104
               

               Conread position:
               155-394
               

               Cow position:
               chr16:5363638-5363882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               36, 57
               

               Conread position:
               159-382
               

               Cow position:
               chr16:14568734-14568509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               97, 89
               

               Conread position:
               169-380
               

               Cow position:
               chr16:35168485-35168698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               18, 80
               

               Conread position:
               187-363
               

               Cow position:
               chr16:30705886-30706065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               74, 6
               

               Conread position:
               187-386
               

               Cow position:
               chr16:21904941-21905142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               140
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               69, 61
               

               Conread position:
               22-387
               

               Cow position:
               chr17:32027809-32027434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 228
               

               Conread position:
               32-386
               

               Cow position:
               chr17:28539708-28540049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               243
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               148, 8
               

               Conread position:
               34-312
               

               Cow position:
               chr17:29715520-29715245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 208
               

               Conread position:
               34-319
               

               Cow position:
               chr17:8644703-8644988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 95
               

               Conread position:
               34-337
               

               Cow position:
               chr17:43717642-43717346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 138
               

               Conread position:
               34-351
               

               Cow position:
               chr17:7821368-7821047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               15, 108
               

               Conread position:
               34-351
               

               Cow position:
               chr17:15103213-15102906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               154, 19
               

               Conread position:
               34-361
               

               Cow position:
               chr17:6566145-6566460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               239
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               154, 78
               

               Conread position:
               34-361
               

               Cow position:
               chr17:19998802-19999133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               232
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               86, 41
               

               Conread position:
               34-362
               

               Cow position:
               chr17:34317051-34316713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 223
               

               Conread position:
               34-368
               

               Cow position:
               chr17:1568503-1568171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               226
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               269, 98
               

               Conread position:
               34-381
               

               Cow position:
               chr17:26764683-26765032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               273, 102
               

               Conread position:
               34-390
               

               Cow position:
               chr17:12059426-12059072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               261
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               105, 7
               

               Conread position:
               34-390
               

               Cow position:
               chr17:32365952-32366305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               273, 134
               

               Conread position:
               35-371
               

               Cow position:
               chr17:9853653-9853991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 216
               

               Conread position:
               35-381
               

               Cow position:
               chr17:21336030-21335681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 70
               

               Conread position:
               35-387
               

               Cow position:
               chr17:13144015-13143671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 111
               

               Conread position:
               39-382
               

               Cow position:
               chr17:1061385-1061044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               242
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               149, 7
               

               Conread position:
               40-355
               

               Cow position:
               chr17:18592109-18592427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               224
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               36, 261
               
41-337UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr17:11397343-11397638 (view  custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               211
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               147, 124
               
42-327UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr17:21038955-21039235 (view  custom track)

               
               
               
Alignm length: 289

               
               
               
Alignm identity: 213

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 146, 15
44-376UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr17:24553681-24554016 (view  custom track)

               
               
               
Alignm length: 338

               
               
               
Alignm identity: 238

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 144, 14

               
               
               Conread position:50-361
               
               
               Cow position:chr17:3306551-3306861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 73

               
               
               Conread position:59-361
               
               
               Cow position:chr17:30529845-30529547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 161

               
               
               Conread position:64-361
               
               
               Cow position:chr17:20889071-20889369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:216
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):123, 115

               
               
               Conread position:64-382
               
               
               Cow position:chr17:25900895-25901212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 114

               
               
               Conread position:79-300
               
               
               Cow position:chr17:16448045-16448264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):106, 73

               
               
               Conread position:80-380
               
               
               Cow position:chr17:3471127-3471434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):72, 160

               
               
               Conread position:80-380
               
               
               Cow position:chr17:12216359-12216060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:83-364
               
               
               Cow position:chr17:41892340-41892068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):120, 65

               
               
               Conread position:84-383
               
               
               Cow position:chr17:18109370-18109068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):104, 158

               
               
               Conread position:89-300
               
               
               Cow position:chr17:12054441-12054648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:93-329
               
               
               Cow position:chr17:40312453-40312685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):165, 41

               
               
               Conread position:104-383
               
               
               Cow position:chr17:8079053-8079332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):83, 101

               
               
               Conread position:105-327
               
               
               Cow position:chr17:25796603-25796379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):83, 144

               
               
               Conread position:107-378
               
               
               Cow position:chr17:21115206-21114946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):81, 27

               
               
               Conread position:116-328
               
               
               Cow position:chr17:24876885-24877100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):8, 134

               
               
               Conread position:117-377
               
               
               Cow position:chr17:21004082-21003819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):71, 132

               
               
               Conread position:133-298
               
               
               Cow position:chr17:14848757-14848600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:141-382
               
               
               Cow position:chr17:6423534-6423778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):47, 38

               
               
               Conread position:142-339
               
               
               Cow position:chr17:1359023-1358830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 39

               
               
               Conread position:142-367
               
               
               Cow position:chr17:38200992-38200760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):33, 116

               
               
               Conread position:147-376
               
               
               Cow position:chr17:7132676-7132440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):41, 102

               
               
               Conread position:148-360
               
               
               Cow position:chr17:30999556-30999760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):153, 100

               
               
               Conread position:148-371
               
               
               Cow position:chr17:9778031-9778253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 106

               
               
               Conread position:148-383
               
               
               Cow position:chr17:24587398-24587638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:148-387
               
               
               Cow position:chr17:24787241-24787004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:149-368
               
               
               Cow position:chr17:25128568-25128347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):42, 60

               
               
               Conread position:150-367
               
               
               Cow position:chr17:32279125-32278905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):38, 64

               
               
               Conread position:158-361
               
               
               Cow position:chr17:38646858-38647052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):149, 25

               
               
               Conread position:162-387
               
               
               Cow position:chr17:27429372-27429598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):26, 95

               
               
               Conread position:168-364
               
               
               Cow position:chr17:5514559-5514757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):19, 40

               
               
               Conread position:174-364
               
               
               Cow position:chr17:21697538-21697734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):17, 76

               
               
               Conread position:187-364
               
               
               Cow position:chr17:34208000-34207821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):120, 61

               
               
               Conread position:187-386
               
               
               Cow position:chr17:4436411-4436212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):114, 54

               
               
               Conread position:33-256
               
               
               Cow position:chr18:52455206-52454986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):152, 90

               
               
               Conread position:33-300
               
               
               Cow position:chr18:28968350-28968083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):155, 177

               
               
               Conread position:33-397
               
               
               Cow position:chr18:27429038-27429403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):158, 43

               
               
               Conread position:34-300
               
               
               Cow position:chr18:32218661-32218398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):159, 71

               
               
               Conread position:34-317
               
               
               Cow position:chr18:9029219-9029498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:214
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):156, 68

               
               
               Conread position:34-371
               
               
               Cow position:chr18:13293102-13293442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:234
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):99, 218

               
               
               Conread position:34-371
               
               
               Cow position:chr18:20864579-20864920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 114

               
               
               Conread position:34-371
               
               
               Cow position:chr18:42747180-42747523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):109, 154

               
               
               Conread position:34-381
               
               
               Cow position:chr18:4707693-4707340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):114, 21

               
               
               Conread position:34-386
               
               
               Cow position:chr18:37002228-37002581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):157, 57

               
               
               Conread position:35-348
               
               
               Cow position:chr18:11866950-11867248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):268, 50

               
               
               Conread position:35-351
               
               
               Cow position:chr18:12118251-12117931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 264

               
               
               Conread position:35-357
               
               
               Cow position:chr18:3180014-3180337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):126, 92

               
               
               Conread position:35-360
               
               
               Cow position:chr18:2270909-2270585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 144

               
               
               Conread position:35-361
               
               
               Cow position:chr18:17004848-17005178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:234
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):153, 88

               
               
               Conread position:35-364
               
               
               Cow position:chr18:50082639-50082328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):145, 35

               
               
               Conread position:35-371
               
               
               Cow position:chr18:22121286-22120950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 117

               
               
               Conread position:35-377
               
               
               Cow position:chr18:23766826-23766477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):112, 54

               
               
               Conread position:35-383
               
               
               Cow position:chr18:34527513-34527155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:244
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):106, 79

               
               
               Conread position:35-383
               
               
               Cow position:chr18:43563822-43564172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):156, 123

               
               
               Conread position:35-387
               
               
               Cow position:chr18:37023962-37023606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 144

               
               
               Conread position:35-388
               
               
               Cow position:chr18:11322183-11322541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:243
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):153, 217

               
               
               Conread position:35-395
               
               
               Cow position:chr18:11618076-11618428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:247
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):264, 143

               
               
               Conread position:40-293
               
               
               Cow position:chr18:51713110-51712856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):148, 210

               
               
               Conread position:40-300
               
               
               Cow position:chr18:7930541-7930287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):208, 33

               
               
               Conread position:40-362
               
               
               Cow position:chr18:51691869-51691542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):148, 209

               
               
               Conread position:41-363
               
               
               Cow position:chr18:39709490-39709812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 208

               
               
               Conread position:47-376
               
               
               Cow position:chr18:14586870-14586529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 203

               
               
               Conread position:50-382
               
               
               Cow position:chr18:3027756-3027419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):139, 159

               
               
               Conread position:55-340
               
               
               Cow position:chr18:32244408-32244122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):77, 185

               
               
               Conread position:58-309
               
               
               Cow position:chr18:30186292-30186050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):92, 150

               
               
               Conread position:58-383
               
               
               Cow position:chr18:4182569-4182245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):129, 38

               
               
               Conread position:61-329
               
               
               Cow position:chr18:11671430-11671698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 6

               
               
               Conread position:66-300
               
               
               Cow position:chr18:2849636-2849401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):123, 198

               
               
               Conread position:67-367
               
               
               Cow position:chr18:16227185-16227489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):82, 146

               
               
               Conread position:69-371
               
               
               Cow position:chr18:10954110-10954409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):118, 11

               
               
               Conread position:70-390
               
               
               Cow position:chr18:29058863-29058545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:226
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):187, 64

               
               
               Conread position:73-351
               
               
               Cow position:chr18:48407422-48407702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 14

               
               
               Conread position:73-387
               
               
               Cow position:chr18:10575744-10576050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 110

               
               
               Conread position:113-333
               
               
               Cow position:chr18:52637862-52637632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):32, 142

               
               
               Conread position:114-368
               
               
               Cow position:chr18:9365585-9365844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):74, 135

               
               
               Conread position:120-359
               
               
               Cow position:chr18:6275495-6275738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):67, 129

               
               
               Conread position:128-305
               
               
               Cow position:chr18:44484071-44483895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):60, 67

               
               
               Conread position:129-361
               
               
               Cow position:chr18:4625589-4625817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):137, 8

               
               
               Conread position:137-329
               
               
               Cow position:chr18:46727289-46727485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):38, 115

               
               
               Conread position:144-371
               
               
               Cow position:chr18:13359765-13359995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):46, 64

               
               
               Conread position:148-331
               
               
               Cow position:chr18:47868162-47868347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:148-332
               
               
               Cow position:chr18:3422427-3422608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):40, 91

               
               
               Conread position:149-364
               
               
               Cow position:chr18:20271312-20271096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 100

               
               
               Conread position:151-381
               
               
               Cow position:chr18:42479870-42479648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):104, 28

               
               
               Conread position:155-329
               
               
               Cow position:chr18:56163301-56163472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):33, 94

               
               
               Conread position:159-346
               
               
               Cow position:chr18:18976802-18976993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):29, 90

               
               
               Conread position:159-381
               
               
               Cow position:chr18:56183656-56183879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):29, 22

               
               
               Conread position:162-382
               
               
               Cow position:chr18:11691689-11691469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):96, 20

               
               
               Conread position:187-381
               
               
               Cow position:chr18:48453440-48453629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):71, 61

               
               
               Conread position:204-382
               
               
               Cow position:chr18:1582519-1582336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):54, 45

               
               
               Conread position:22-371
               
               
               Cow position:chr19:28014082-28014431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 91

               
               
               Conread position:32-359
               
               
               Cow position:chr19:30518666-30518998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):159, 54

               
               
               Conread position:34-303
               
               
               Cow position:chr19:14572985-14573256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):148, 21

               
               
               Conread position:34-327
               
               
               Cow position:chr19:11395348-11395052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):160, 215

               
               
               Conread position:34-344
               
               
               Cow position:chr19:34654961-34654653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):50, 55

               
               
               Conread position:34-361
               
               
               Cow position:chr19:39661928-39661599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 73

               
               
               Conread position:34-362
               
               
               Cow position:chr19:33306714-33307045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 103

               
               
               Conread position:34-364
               
               
               Cow position:chr19:6688391-6688052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 212

               
               
               Conread position:34-371
               
               
               Cow position:chr19:18786710-18786371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 65

               
               
               Conread position:34-371
               
               
               Cow position:chr19:32450678-32451034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):89, 229

               
               
               Conread position:34-382
               
               
               Cow position:chr19:1901389-1901034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 217

               
               
               Conread position:34-386
               
               
               Cow position:chr19:15068379-15068037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 181

               
               
               Conread position:34-387
               
               
               Cow position:chr19:24061912-24062253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 13

               
               
               Conread position:35-312
               
               
               Cow position:chr19:20699701-20699983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):115, 99

               
               
               Conread position:35-316
               
               
               Cow position:chr19:10754927-10755209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):20, 108

               
               
               Conread position:35-338
               
               
               Cow position:chr19:52457136-52456840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):150, 84

               
               
               Conread position:35-368
               
               
               Cow position:chr19:17795509-17795846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:237
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):106, 49

               
               
               Conread position:35-371
               
               
               Cow position:chr19:8496685-8496344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):151, 107

               
               
               Conread position:35-371
               
               
               Cow position:chr19:39751092-39751431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:246
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):56, 123

               
               
               Conread position:35-383
               
               
               Cow position:chr19:35380930-35380584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):295, 79

               
               
               Conread position:35-386
               
               
               Cow position:chr19:43431703-43431360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):153, 99

               
               
               Conread position:39-321
               
               
               Cow position:chr19:37633733-37633452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 210

               
               
               Conread position:40-370
               
               
               Cow position:chr19:47118859-47118543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):148, 49

               
               
               Conread position:40-380
               
               
               Cow position:chr19:23785810-23786155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 18

               
               
               Conread position:40-382
               
               
               Cow position:chr19:5185633-5185280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:242
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:42-388
               
               
               Cow position:chr19:24669746-24669405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 226

               
               
               Conread position:43-325
               
               
               Cow position:chr19:53463545-53463263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):77, 84

               
               
               Conread position:43-371
               
               
               Cow position:chr19:48409140-48409463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:237
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):109, 32

               
               
               Conread position:49-382
               
               
               Cow position:chr19:25696576-25696246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 138

               
               
               Conread position:62-387
               
               
               Cow position:chr19:14592697-14593023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:237
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):196, 5

               
               
               Conread position:63-337
               
               
               Cow position:chr19:23404007-23403724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):96, 194

               
               
               Conread position:63-363
               
               
               Cow position:chr19:44757973-44757675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):86, 189

               
               
               Conread position:83-371
               
               
               Cow position:chr19:38596279-38596572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):105, 22

               
               
               Conread position:83-386
               
               
               Cow position:chr19:46454512-46454814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):72, 37

               
               
               Conread position:92-304
               
               
               Cow position:chr19:37502984-37502782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):166, 87

               
               
               Conread position:105-381
               
               
               Cow position:chr19:11066123-11065843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):85, 144

               
               
               Conread position:115-364
               
               
               Cow position:chr19:40051690-40051446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):73, 83

               
               
               Conread position:116-382
               
               
               Cow position:chr19:24144717-24144985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):70, 10

               
               
               Conread position:117-316
               
               
               Cow position:chr19:24936119-24935920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):33, 112

               
               
               Conread position:141-361
               
               
               Cow position:chr19:19561227-19561454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):46, 108

               
               
               Conread position:142-355
               
               
               Cow position:chr19:3496452-3496240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):61, 107

               
               
               Conread position:142-397
               
               
               Cow position:chr19:36059654-36059911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):46, 110

               
               
               Conread position:145-364
               
               
               Cow position:chr19:15887597-15887379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):43, 49

               
               
               Conread position:148-382
               
               
               Cow position:chr19:13316673-13316453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):159, 31

               
               
               Conread position:151-350
               
               
               Cow position:chr19:38638070-38637874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):37, 92

               
               
               Conread position:151-383
               
               
               Cow position:chr19:3812284-3812052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):37, 99

               
               
               Conread position:151-384
               
               
               Cow position:chr19:10545977-10545739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):40, 58

               
               
               Conread position:162-390
               
               
               Cow position:chr19:21378724-21378498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):14, 81

               
               
               Conread position:163-385
               
               
               Cow position:chr19:55589975-55590196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):14, 87

               
               
               Conread position:167-383
               
               
               Cow position:chr19:19919714-19919497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):21, 42

               
               
               Conread position:208-371
               
               
               Cow position:chr19:24137047-24137213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):50, 40

               
               
               Conread position:3-294
               
               
               Cow position:chr2:13033939-13033635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):25, 258

               
               
               Conread position:14-387
               
               
               Cow position:chr2:56102864-56102484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 155

               
               
               Conread position:29-382
               
               
               Cow position:chr2:65270072-65269718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 5

               
               
               Conread position:31-162
               
               
               Cow position:chr2:6911613-6911743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:31-400
               
               
               Cow position:chr2:33447477-33447115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):235, 9

               
               
               Conread position:32-364
               
               
               Cow position:chr2:54789899-54790240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):104, 8

               
               
               Conread position:33-329
               
               
               Cow position:chr2:52485362-52485056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):117, 8

               
               
               Conread position:33-339
               
               
               Cow position:chr2:17444404-17444722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):106, 231

               
               
               Conread position:33-397
               
               
               Cow position:chr2:982402-982768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):148, 174

               
               
               Conread position:34-295
               
               
               Cow position:chr2:50352481-50352752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):103, 7

               
               
               Conread position:34-300
               
               
               Cow position:chr2:304723-304465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):157, 89

               
               
               Conread position:34-300
               
               
               Cow position:chr2:18062008-18061737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):120, 219

               
               
               Conread position:34-307
               
               
               Cow position:chr2:59593126-59592845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):107, 221

               
               
               Conread position:34-321
               
               
               Cow position:chr2:30910037-30910337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):70, 227

               
               
               Conread position:34-356
               
               
               Cow position:chr2:21356219-21355901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 77

               
               
               Conread position:34-361
               
               
               Cow position:chr2:35882702-35882379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 101

               
               
               Conread position:34-364
               
               
               Cow position:chr2:7524510-7524177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 131

               
               
               Conread position:34-368
               
               
               Cow position:chr2:69581882-69581544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 131

               
               
               Conread position:34-371
               
               
               Cow position:chr2:1303576-1303913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:251
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):118, 76

               
               
               Conread position:34-371
               
               
               Cow position:chr2:26439100-26438761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 172

               
               
               Conread position:34-371
               
               
               Cow position:chr2:38628542-38628871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):151, 112

               
               
               Conread position:34-371
               
               
               Cow position:chr2:61485262-61485589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):139, 152

               
               
               Conread position:34-377
               
               
               Cow position:chr2:24435396-24435054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):159, 91

               
               
               Conread position:34-386
               
               
               Cow position:chr2:47784000-47784344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 146

               
               
               Conread position:34-387
               
               
               Cow position:chr2:34571842-34571482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:246
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):159, 145

               
               
               Conread position:34-387
               
               
               Cow position:chr2:45913009-45912653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:260
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):154, 57

               
               
               Conread position:34-394
               
               
               Cow position:chr2:46357474-46357819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):154, 100

               
               
               Conread position:35-363
               
               
               Cow position:chr2:23493162-23493494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 76

               
               
               Conread position:35-364
               
               
               Cow position:chr2:14853951-14854272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 27

               
               
               Conread position:35-364
               
               
               Cow position:chr2:17940658-17940329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 20

               
               
               Conread position:35-371
               
               
               Cow position:chr2:778066-777723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):49, 152

               
               
               Conread position:35-371
               
               
               Cow position:chr2:47361893-47361555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):234, 148

               
               
               Conread position:35-382
               
               
               Cow position:chr2:42800679-42801018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 18

               
               
               Conread position:35-386
               
               
               Cow position:chr2:77467827-77467469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:252
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):138, 106

               
               
               Conread position:35-387
               
               
               Cow position:chr2:28819991-28820343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:249
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):162, 124

               
               
               Conread position:35-387
               
               
               Cow position:chr2:33262989-33262633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 172

               
               
               Conread position:35-395
               
               
               Cow position:chr2:48069773-48069410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 102

               
               
               Conread position:40-340
               
               
               Cow position:chr2:14825916-14826220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 210

               
               
               Conread position:40-368
               
               
               Cow position:chr2:81791945-81791610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):102, 73

               
               
               Conread position:40-377
               
               
               Cow position:chr2:2673157-2673496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 144

               
               
               Conread position:40-382
               
               
               Cow position:chr2:988323-988668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 208

               
               
               Conread position:40-386
               
               
               Cow position:chr2:39815648-39815305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 88

               
               
               Conread position:40-387
               
               
               Cow position:chr2:51824572-51824904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):148, 92

               
               
               Conread position:41-368
               
               
               Cow position:chr2:27600912-27600581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 208

               
               
               Conread position:41-382
               
               
               Cow position:chr2:32417237-32416885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):100, 183

               
               
               Conread position:42-329
               
               
               Cow position:chr2:75561471-75561758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 139

               
               
               Conread position:44-330
               
               
               Cow position:chr2:15815226-15815513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 205

               
               
               Conread position:45-315
               
               
               Cow position:chr2:86308249-86307983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):143, 39

               
               
               Conread position:47-305
               
               
               Cow position:chr2:35135616-35135868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):141, 63

               
               
               Conread position:54-371
               
               
               Cow position:chr2:46909776-46909474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):204, 80

               
               
               Conread position:55-335
               
               
               Cow position:chr2:8732160-8731888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):245, 86

               
               
               Conread position:62-328
               
               
               Cow position:chr2:39567021-39566757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):204, 69

               
               
               Conread position:63-368
               
               
               Cow position:chr2:45499542-45499241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 175

               
               
               Conread position:68-355
               
               
               Cow position:chr2:76969516-76969229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):115, 31

               
               
               Conread position:80-387
               
               
               Cow position:chr2:38965293-38965599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 67

               
               
               Conread position:80-397
               
               
               Cow position:chr2:7534107-7533781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):67, 177

               
               
               Conread position:82-382
               
               
               Cow position:chr2:63865657-63865352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):109, 60

               
               
               Conread position:84-362
               
               
               Cow position:chr2:81388367-81388645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 15

               
               
               Conread position:84-380
               
               
               Cow position:chr2:80242513-80242217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):212, 100

               
               
               Conread position:87-382
               
               
               Cow position:chr2:46201951-46202242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):100, 48

               
               
               Conread position:94-350
               
               
               Cow position:chr2:33497518-33497254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):94, 155

               
               
               Conread position:105-383
               
               
               Cow position:chr2:74260156-74260434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):83, 74

               
               
               Conread position:107-333
               
               
               Cow position:chr2:17800220-17800441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):159, 78

               
               
               Conread position:115-376
               
               
               Cow position:chr2:46231059-46230791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):41, 19

               
               
               Conread position:129-362
               
               
               Cow position:chr2:42607792-42608021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):59, 83

               
               
               Conread position:132-307
               
               
               Cow position:chr2:57939406-57939583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):57, 117

               
               
               Conread position:132-387
               
               
               Cow position:chr2:13582308-13582563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):126, 75

               
               
               Conread position:136-382
               
               
               Cow position:chr2:45619667-45619424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):52, 113

               
               
               Conread position:136-397
               
               
               Cow position:chr2:46244298-46244031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 113

               
               
               Conread position:141-364
               
               
               Cow position:chr2:30816690-30816920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):117, 67

               
               
               Conread position:141-366
               
               
               Cow position:chr2:47138570-47138800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 71

               
               
               Conread position:141-386
               
               
               Cow position:chr2:42927718-42927467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):47, 108

               
               
               Conread position:144-397
               
               
               Cow position:chr2:66615184-66614922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):11, 106

               
               
               Conread position:145-364
               
               
               Cow position:chr2:50580106-50580331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):43, 34

               
               
               Conread position:147-362
               
               
               Cow position:chr2:25283549-25283770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:147-362
               
               
               Cow position:chr2:25285293-25285514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:147-369
               
               
               Cow position:chr2:4223526-4223300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):151, 103

               
               
               Conread position:150-370
               
               
               Cow position:chr2:47072933-47073158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 71

               
               
               Conread position:152-377
               
               
               Cow position:chr2:19287333-19287114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 90

               
               
               Conread position:156-364
               
               
               Cow position:chr2:15812407-15812610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):110, 29

               
               
               Conread position:159-386
               
               
               Cow position:chr2:48361320-48361552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):99, 23

               
               
               Conread position:159-393
               
               
               Cow position:chr2:24393938-24393704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 90

               
               
               Conread position:162-382
               
               
               Cow position:chr2:25964731-25964513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):26, 80

               
               
               Conread position:162-390
               
               
               Cow position:chr2:17967280-17967048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 88

               
               
               Conread position:163-383
               
               
               Cow position:chr2:39489536-39489755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):8, 89

               
               
               Conread position:174-368
               
               
               Cow position:chr2:1134628-1134428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):14, 75

               
               
               Conread position:187-397
               
               
               Cow position:chr2:38362592-38362380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):82, 61

               
               
               Conread position:2-386
               
               
               Cow position:chr20:15068789-15069161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):188, 27

               
               
               Conread position:22-361
               
               
               Cow position:chr20:11614388-11614046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 228

               
               
               Conread position:33-323
               
               
               Cow position:chr20:4950753-4950461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):158, 165

               
               
               Conread position:33-359
               
               
               Cow position:chr20:27877390-27877723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:34-294
               
               
               Cow position:chr20:11176579-11176318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):153, 215

               
               
               Conread position:34-295
               
               
               Cow position:chr20:19352093-19351838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):224, 110

               
               
               Conread position:34-316
               
               
               Cow position:chr20:20778872-20778601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):160, 80

               
               
               Conread position:34-317
               
               
               Cow position:chr20:9014680-9014393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 215

               
               
               Conread position:34-321
               
               
               Cow position:chr20:12839726-12840009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 120

               
               
               Conread position:34-364
               
               
               Cow position:chr20:12442022-12441686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 50

               
               
               Conread position:34-364
               
               
               Cow position:chr20:17734101-17733775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):222, 89

               
               
               Conread position:34-368
               
               
               Cow position:chr20:19313397-19313060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 120

               
               
               Conread position:34-368
               
               
               Cow position:chr20:23792272-23792612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):168, 145

               
               
               Conread position:34-386
               
               
               Cow position:chr20:6258394-6258040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 22

               
               
               Conread position:34-387
               
               
               Cow position:chr20:8577916-8578270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):157, 19

               
               
               Conread position:35-307
               
               
               Cow position:chr20:13821913-13821643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):234, 150

               
               
               Conread position:35-307
               
               
               Cow position:chr20:14719071-14718803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 146

               
               
               Conread position:35-321
               
               
               Cow position:chr20:34836195-34835916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):233, 95

               
               
               Conread position:35-329
               
               
               Cow position:chr20:5702417-5702709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 107

               
               
               Conread position:35-363
               
               
               Cow position:chr20:17903828-17904158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):143, 99

               
               
               Conread position:35-376
               
               
               Cow position:chr20:31927789-31927446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:241
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):154, 214

               
               
               Conread position:35-382
               
               
               Cow position:chr20:6096815-6096476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:247
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):153, 20

               
               
               Conread position:40-333
               
               
               Cow position:chr20:4893239-4892939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):98, 218

               
               
               Conread position:40-381
               
               
               Cow position:chr20:18321120-18320775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):134, 89

               
               
               Conread position:45-387
               
               
               Cow position:chr20:24069494-24069827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):261, 119

               
               
               Conread position:46-393
               
               
               Cow position:chr20:3034775-3035129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 90

               
               
               Conread position:49-345
               
               
               Cow position:chr20:4781235-4781538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 119

               
               
               Conread position:63-386
               
               
               Cow position:chr20:5998977-5998650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 189

               
               
               Conread position:80-382
               
               
               Cow position:chr20:6240815-6240502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 222

               
               
               Conread position:91-364
               
               
               Cow position:chr20:21714477-21714755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):89, 50

               
               
               Conread position:94-386
               
               
               Cow position:chr20:10178382-10178077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):80, 41

               
               
               Conread position:115-387
               
               
               Cow position:chr20:3607202-3606939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):73, 55

               
               
               Conread position:126-300
               
               
               Cow position:chr20:39050419-39050244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):60, 123

               
               
               Conread position:127-387
               
               
               Cow position:chr20:10200102-10200365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):53, 128

               
               
               Conread position:128-387
               
               
               Cow position:chr20:10208567-10208829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):140, 7

               
               
               Conread position:132-333
               
               
               Cow position:chr20:1640681-1640477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):58, 117

               
               
               Conread position:133-368
               
               
               Cow position:chr20:3331527-3331284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 116

               
               
               Conread position:134-382
               
               
               Cow position:chr20:11341037-11340782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):54, 115

               
               
               Conread position:141-371
               
               
               Cow position:chr20:8910699-8910924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):44, 101

               
               
               Conread position:147-371
               
               
               Cow position:chr20:11741522-11741294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):41, 34

               
               
               Conread position:148-377
               
               
               Cow position:chr20:14735459-14735689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):40, 31

               
               
               Conread position:151-387
               
               
               Cow position:chr20:22704073-22704316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):37, 98

               
               
               Conread position:152-331
               
               
               Cow position:chr20:5116519-5116339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):11, 27

               
               
               Conread position:168-382
               
               
               Cow position:chr20:8556472-8556252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 81

               
               
               Conread position:175-363
               
               
               Cow position:chr20:13994618-13994811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):13, 74

               
               
               Conread position:210-368
               
               
               Cow position:chr20:5636325-5636487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:32-390
               
               
               Cow position:chr21:393709-394065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:245
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):158, 8

               
               
               Conread position:33-359
               
               
               Cow position:chr21:43402302-43401974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):154, 81

               
               
               Conread position:33-380
               
               
               Cow position:chr21:4569810-4569454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):131, 218

               
               
               Conread position:33-380
               
               
               Cow position:chr21:32297814-32297473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 146

               
               
               Conread position:33-397
               
               
               Cow position:chr21:5021156-5021526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):158, 216

               
               
               Conread position:33-397
               
               
               Cow position:chr21:17144836-17145202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):158, 216

               
               
               Conread position:34-337
               
               
               Cow position:chr21:28993937-28993630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):157, 215

               
               
               Conread position:34-340
               
               
               Cow position:chr21:38691882-38692179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):127, 33

               
               
               Conread position:34-363
               
               
               Cow position:chr21:20045078-20044749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):261, 95

               
               
               Conread position:34-364
               
               
               Cow position:chr21:21480490-21480163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 149

               
               
               Conread position:34-371
               
               
               Cow position:chr21:23984594-23984254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 7

               
               
               Conread position:34-382
               
               
               Cow position:chr21:33983121-33982768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 216

               
               
               Conread position:34-387
               
               
               Cow position:chr21:37479648-37479997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:246
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):154, 100

               
               
               Conread position:34-397
               
               
               Cow position:chr21:2495482-2495120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):157, 95

               
               
               Conread position:35-319
               
               
               Cow position:chr21:28029087-28029372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 214

               
               
               Conread position:35-327
               
               
               Cow position:chr21:17410965-17410677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):223, 88

               
               
               Conread position:35-328
               
               
               Cow position:chr21:7717097-7716804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 23

               
               
               Conread position:35-348
               
               
               Cow position:chr21:6765012-6764692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 160

               
               
               Conread position:35-371
               
               
               Cow position:chr21:18494668-18494996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):223, 77

               
               
               Conread position:35-382
               
               
               Cow position:chr21:38900471-38900814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:248
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):153, 43

               
               
               Conread position:35-382
               
               
               Cow position:chr21:41974689-41974337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 214

               
               
               Conread position:35-384
               
               
               Cow position:chr21:44671443-44671791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 214

               
               
               Conread position:35-386
               
               
               Cow position:chr21:4998795-4998445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 150

               
               
               Conread position:35-386
               
               
               Cow position:chr21:20262644-20262291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 207

               
               
               Conread position:35-386
               
               
               Cow position:chr21:34391276-34390933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 70

               
               
               Conread position:35-386
               
               
               Cow position:chr21:47760467-47760811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 150

               
               
               Conread position:35-390
               
               
               Cow position:chr21:30990578-30990232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 144

               
               
               Conread position:35-394
               
               
               Cow position:chr21:42905679-42905326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:244
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):153, 20

               
               
               Conread position:40-307
               
               
               Cow position:chr21:8289944-8289677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):151, 59

               
               
               Conread position:40-350
               
               
               Cow position:chr21:24887692-24888015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):81, 65

               
               
               Conread position:40-380
               
               
               Cow position:chr21:42384203-42384546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 94

               
               
               Conread position:40-383
               
               
               Cow position:chr21:9415938-9416287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 56

               
               
               Conread position:42-388
               
               
               Cow position:chr21:46263874-46264215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 85

               
               
               Conread position:44-371
               
               
               Cow position:chr21:39401299-39401621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 137

               
               
               Conread position:45-360
               
               
               Cow position:chr21:11707050-11706729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 86

               
               
               Conread position:45-387
               
               
               Cow position:chr21:23586563-23586923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):98, 51

               
               
               Conread position:50-330
               
               
               Cow position:chr21:20109127-20108842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):64, 36

               
               
               Conread position:50-347
               
               
               Cow position:chr21:13718155-13717854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):64, 164

               
               
               Conread position:50-347
               
               
               Cow position:chr21:17709533-17709831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):138, 97

               
               
               Conread position:58-295
               
               
               Cow position:chr21:30231987-30231751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):118, 76

               
               
               Conread position:58-371
               
               
               Cow position:chr21:36297192-36297517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:232
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):130, 121

               
               
               Conread position:62-303
               
               
               Cow position:chr21:21600943-21600701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):131, 207

               
               
               Conread position:80-307
               
               
               Cow position:chr21:14464300-14464538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):44, 180

               
               
               Conread position:81-382
               
               
               Cow position:chr21:33350481-33350778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 53

               
               
               Conread position:82-349
               
               
               Cow position:chr21:18935503-18935764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):166, 34

               
               
               Conread position:84-300
               
               
               Cow position:chr21:17643224-17643015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):150, 63

               
               
               Conread position:86-337
               
               
               Cow position:chr21:39403797-39403545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):215, 162

               
               
               Conread position:94-383
               
               
               Cow position:chr21:23322332-23322039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):164, 90

               
               
               Conread position:96-397
               
               
               Cow position:chr21:4267599-4267296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):95, 153

               
               
               Conread position:105-362
               
               
               Cow position:chr21:5636961-5636700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):83, 151

               
               
               Conread position:105-383
               
               
               Cow position:chr21:13410063-13409786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):83, 144

               
               
               Conread position:110-300
               
               
               Cow position:chr21:28919858-28919670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):70, 31

               
               
               Conread position:119-295
               
               
               Cow position:chr21:11877158-11877330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):139, 66

               
               
               Conread position:140-371
               
               
               Cow position:chr21:19258621-19258851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):48, 109

               
               
               Conread position:141-329
               
               
               Cow position:chr21:6051302-6051488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 108

               
               
               Conread position:141-394
               
               
               Cow position:chr21:29484780-29485027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 38

               
               
               Conread position:142-349
               
               
               Cow position:chr21:41579548-41579761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):116, 38

               
               
               Conread position:148-362
               
               
               Cow position:chr21:18828506-18828289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 31

               
               
               Conread position:148-383
               
               
               Cow position:chr21:29002359-29002116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):42, 150

               
               
               Conread position:159-364
               
               
               Cow position:chr21:40589669-40589465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):30, 90

               
               
               Conread position:17-397
               
               
               Cow position:chr22:13861193-13861569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:261
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):99, 118

               
               
               Conread position:26-368
               
               
               Cow position:chr22:4990553-4990211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):164, 18

               
               
               Conread position:32-360
               
               
               Cow position:chr22:19340822-19341156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:236
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):119, 7

               
               
               Conread position:32-371
               
               
               Cow position:chr22:20626463-20626799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 8

               
               
               Conread position:33-300
               
               
               Cow position:chr22:44936794-44937066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):114, 180

               
               
               Conread position:33-316
               
               
               Cow position:chr22:5364117-5363832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):156, 216

               
               
               Conread position:33-387
               
               
               Cow position:chr22:38439531-38439183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):155, 57

               
               
               Conread position:34-300
               
               
               Cow position:chr22:11211972-11211710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):18, 132

               
               
               Conread position:34-312
               
               
               Cow position:chr22:10630997-10631274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):224, 150

               
               
               Conread position:34-329
               
               
               Cow position:chr22:33986141-33985848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 7

               
               
               Conread position:34-331
               
               
               Cow position:chr22:10122011-10122307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 104

               
               
               Conread position:34-360
               
               
               Cow position:chr22:8732939-8732614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 145

               
               
               Conread position:34-363
               
               
               Cow position:chr22:40121240-40120927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:240
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):146, 100

               
               
               Conread position:34-364
               
               
               Cow position:chr22:19738948-19738619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):224, 110

               
               
               Conread position:34-371
               
               
               Cow position:chr22:10302633-10302976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 110

               
               
               Conread position:34-371
               
               
               Cow position:chr22:25943103-25943435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 220

               
               
               Conread position:34-376
               
               
               Cow position:chr22:4119946-4119599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 208

               
               
               Conread position:34-376
               
               
               Cow position:chr22:6123263-6122937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):270, 95

               
               
               Conread position:34-377
               
               
               Cow position:chr22:1342364-1342701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):273, 100

               
               
               Conread position:34-387
               
               
               Cow position:chr22:10161588-10161939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 97

               
               
               Conread position:34-387
               
               
               Cow position:chr22:31646116-31646467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 219

               
               
               Conread position:34-408
               
               
               Cow position:chr22:11613050-11613421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 146

               
               
               Conread position:35-329
               
               
               Cow position:chr22:15951253-15950958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):94, 20

               
               
               Conread position:35-329
               
               
               Cow position:chr22:34931130-34930830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):101, 211

               
               
               Conread position:35-360
               
               
               Cow position:chr22:10920238-10919904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 93

               
               
               Conread position:35-364
               
               
               Cow position:chr22:29955374-29955046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):155, 96

               
               
               Conread position:35-367
               
               
               Cow position:chr22:38313859-38313512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):82, 225

               
               
               Conread position:35-371
               
               
               Cow position:chr22:13769109-13769430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 35

               
               
               Conread position:35-371
               
               
               Cow position:chr22:14844191-14844528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:245
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):116, 45

               
               
               Conread position:35-380
               
               
               Cow position:chr22:21502360-21502711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 49

               
               
               Conread position:35-383
               
               
               Cow position:chr22:4645401-4645745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 75

               
               
               Conread position:35-386
               
               
               Cow position:chr22:26316102-26316445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:249
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):260, 130

               
               
               Conread position:35-387
               
               
               Cow position:chr22:4337732-4338087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 100

               
               
               Conread position:35-397
               
               
               Cow position:chr22:30689254-30689618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 214

               
               
               Conread position:35-409
               
               
               Cow position:chr22:1064758-1065120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 170

               
               
               Conread position:40-295
               
               
               Cow position:chr22:32892328-32892579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):228, 133

               
               
               Conread position:40-319
               
               
               Cow position:chr22:29290508-29290229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):148, 139

               
               
               Conread position:41-340
               
               
               Cow position:chr22:14366324-14366027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 29

               
               
               Conread position:42-300
               
               
               Cow position:chr22:13206214-13205956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):99, 119

               
               
               Conread position:42-330
               
               
               Cow position:chr22:5930478-5930190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 277

               
               
               Conread position:42-390
               
               
               Cow position:chr22:9127023-9127388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):12, 150

               
               
               Conread position:44-321
               
               
               Cow position:chr22:12527795-12527525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):139, 110

               
               
               Conread position:46-387
               
               
               Cow position:chr22:41983070-41982743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):142, 88

               
               
               Conread position:47-330
               
               
               Cow position:chr22:24611441-24611165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 195

               
               
               Conread position:54-312
               
               
               Cow position:chr22:28120433-28120692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 195

               
               
               Conread position:55-300
               
               
               Cow position:chr22:23865105-23865350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):133, 124

               
               
               Conread position:55-382
               
               
               Cow position:chr22:3960653-3960312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 197

               
               
               Conread position:60-371
               
               
               Cow position:chr22:22160369-22160684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 118

               
               
               Conread position:80-364
               
               
               Cow position:chr22:40071637-40071928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):108, 226

               
               
               Conread position:80-371
               
               
               Cow position:chr22:23856716-23857008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 169

               
               
               Conread position:82-371
               
               
               Cow position:chr22:43397689-43397973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 103

               
               
               Conread position:83-388
               
               
               Cow position:chr22:26134561-26134251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):105, 51

               
               
               Conread position:84-364
               
               
               Cow position:chr22:22861239-22860956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):104, 95

               
               
               Conread position:105-368
               
               
               Cow position:chr22:2502531-2502784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):85, 74

               
               
               Conread position:107-368
               
               
               Cow position:chr22:23138506-23138252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):159, 24

               
               
               Conread position:116-380
               
               
               Cow position:chr22:3993314-3993581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):72, 126

               
               
               Conread position:141-367
               
               
               Cow position:chr22:19848666-19848439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):125, 67

               
               
               Conread position:160-382
               
               
               Cow position:chr22:47582654-47582872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):28, 74

               
               
               Conread position:164-387
               
               
               Cow position:chr22:25222149-25221922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 15

               
               
               Conread position:166-389
               
               
               Cow position:chr22:7882303-7882530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):10, 84

               
               
               Conread position:173-368
               
               
               Cow position:chr22:23403880-23403691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):15, 69

               
               
               Conread position:187-364
               
               
               Cow position:chr22:1590796-1590976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):120, 46

               
               
               Conread position:192-383
               
               
               Cow position:chr22:10403715-10403527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:33-300
               
               
               Cow position:chr23:15702879-15702614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):158, 175

               
               
               Conread position:34-295
               
               
               Cow position:chr23:5151608-5151877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):139, 58

               
               
               Conread position:34-300
               
               
               Cow position:chr23:21789144-21788877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):156, 215

               
               
               Conread position:34-337
               
               
               Cow position:chr23:8698073-8698371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):155, 114

               
               
               Conread position:34-337
               
               
               Cow position:chr23:9268216-9268522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):41, 146

               
               
               Conread position:34-364
               
               
               Cow position:chr23:1430173-1429842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 214

               
               
               Conread position:34-386
               
               
               Cow position:chr23:25408464-25408812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):30, 142

               
               
               Conread position:34-387
               
               
               Cow position:chr23:14191178-14191534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 121

               
               
               Conread position:34-393
               
               
               Cow position:chr23:41285566-41285906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):151, 29

               
               
               Conread position:35-364
               
               
               Cow position:chr23:13598982-13599303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):153, 64

               
               
               Conread position:35-368
               
               
               Cow position:chr23:24866934-24867268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):152, 90

               
               
               Conread position:35-379
               
               
               Cow position:chr23:1924205-1923863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 144

               
               
               Conread position:35-386
               
               
               Cow position:chr23:10014174-10014521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):24, 101

               
               
               Conread position:47-350
               
               
               Cow position:chr23:7402346-7402646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):141, 195

               
               
               Conread position:67-364
               
               
               Cow position:chr23:37065501-37065801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 28

               
               
               Conread position:79-388
               
               
               Cow position:chr23:39752786-39753099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 170

               
               
               Conread position:92-387
               
               
               Cow position:chr23:4980853-4980564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):14, 46

               
               
               Conread position:94-381
               
               
               Cow position:chr23:587083-587377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:105-371
               
               
               Cow position:chr23:3247289-3247550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):86, 27

               
               
               Conread position:116-329
               
               
               Cow position:chr23:1690497-1690711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):71, 133

               
               
               Conread position:142-361
               
               
               Cow position:chr23:4338871-4338656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 11

               
               
               Conread position:142-381
               
               
               Cow position:chr23:39775466-39775700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):165, 106

               
               
               Conread position:147-394
               
               
               Cow position:chr23:29034053-29034307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 102

               
               
               Conread position:148-364
               
               
               Cow position:chr23:26795163-26794954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):38, 101

               
               
               Conread position:148-386
               
               
               Cow position:chr23:15287393-15287157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:150-364
               
               
               Cow position:chr23:1803537-1803749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):108, 33

               
               
               Conread position:154-354
               
               
               Cow position:chr23:5395678-5395480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):34, 95

               
               
               Conread position:154-357
               
               
               Cow position:chr23:26632547-26632754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):34, 25

               
               
               Conread position:154-382
               
               
               Cow position:chr23:2282427-2282198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):34, 51

               
               
               Conread position:154-382
               
               
               Cow position:chr23:19979201-19978974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):20, 96

               
               
               Conread position:156-364
               
               
               Cow position:chr23:11045233-11045444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):34, 78

               
               
               Conread position:156-368
               
               
               Cow position:chr23:1878122-1877911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):29, 93

               
               
               Conread position:157-362
               
               
               Cow position:chr23:2055452-2055662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):31, 92

               
               
               Conread position:170-364
               
               
               Cow position:chr23:27544595-27544787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):18, 72

               
               
               Conread position:22-300
               
               
               Cow position:chr24:17993085-17992808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):169, 184

               
               
               Conread position:34-329
               
               
               Cow position:chr24:18025364-18025076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):154, 113

               
               
               Conread position:34-363
               
               
               Cow position:chr24:11006815-11007151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):122, 216

               
               
               Conread position:34-371
               
               
               Cow position:chr24:19658148-19658495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 218

               
               
               Conread position:34-381
               
               
               Cow position:chr24:7001467-7001117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:245
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):144, 19

               
               
               Conread position:34-383
               
               
               Cow position:chr24:27720148-27719804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:247
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):152, 95

               
               
               Conread position:34-387
               
               
               Cow position:chr24:28496987-28496628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 145

               
               
               Conread position:34-387
               
               
               Cow position:chr24:31811788-31812143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 113

               
               
               Conread position:35-311
               
               
               Cow position:chr24:19466331-19466055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 164

               
               
               Conread position:35-330
               
               
               Cow position:chr24:24002580-24002873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 150

               
               
               Conread position:35-364
               
               
               Cow position:chr24:6071200-6071530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 99

               
               
               Conread position:35-364
               
               
               Cow position:chr24:21264904-21264576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):260, 128

               
               
               Conread position:35-364
               
               
               Cow position:chr24:27906030-27906370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 221

               
               
               Conread position:35-368
               
               
               Cow position:chr24:32205194-32204858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 219

               
               
               Conread position:35-368
               
               
               Cow position:chr24:36486462-36486123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):55, 51

               
               
               Conread position:35-382
               
               
               Cow position:chr24:7917767-7917413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 152

               
               
               Conread position:40-371
               
               
               Cow position:chr24:3493503-3493825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 15

               
               
               Conread position:41-387
               
               
               Cow position:chr24:28062554-28062906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:254
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):112, 82

               
               
               Conread position:44-356
               
               
               Cow position:chr24:39219235-39218916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 135

               
               
               Conread position:45-364
               
               
               Cow position:chr24:43635042-43635367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 139

               
               
               Conread position:58-394
               
               
               Cow position:chr24:39483101-39483440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):130, 101

               
               
               Conread position:61-375
               
               
               Cow position:chr24:37650307-37650614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):126, 73

               
               
               Conread position:63-386
               
               
               Cow position:chr24:43363990-43364315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:234
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):71, 30

               
               
               Conread position:66-313
               
               
               Cow position:chr24:15288490-15288737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):122, 183

               
               
               Conread position:80-371
               
               
               Cow position:chr24:29679664-29679370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:80-386
               
               
               Cow position:chr24:29027699-29027999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):227, 54

               
               
               Conread position:82-329
               
               
               Cow position:chr24:34532772-34533021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:89-386
               
               
               Cow position:chr24:5754497-5754790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):99, 139

               
               
               Conread position:97-350
               
               
               Cow position:chr24:27735907-27735662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):80, 71

               
               
               Conread position:105-350
               
               
               Cow position:chr24:18734688-18734433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):82, 109

               
               
               Conread position:128-316
               
               
               Cow position:chr24:19804381-19804571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):9, 122

               
               
               Conread position:141-363
               
               
               Cow position:chr24:35795033-35794807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):5, 109

               
               
               Conread position:143-393
               
               
               Cow position:chr24:36404437-36404182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):115, 108

               
               
               Conread position:147-350
               
               
               Cow position:chr24:2730856-2730655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):41, 102

               
               
               Conread position:148-364
               
               
               Cow position:chr24:30229181-30229403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):26, 103

               
               
               Conread position:156-397
               
               
               Cow position:chr24:27967803-27968044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):34, 93

               
               
               Conread position:33-359
               
               
               Cow position:chr25:36392341-36392010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):158, 53

               
               
               Conread position:33-413
               
               
               Cow position:chr25:13960689-13961068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):158, 117

               
               
               Conread position:34-316
               
               
               Cow position:chr25:21193320-21193038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 150

               
               
               Conread position:34-355
               
               
               Cow position:chr25:1735687-1735368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):154, 113

               
               
               Conread position:34-355
               
               
               Cow position:chr25:21209323-21209007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 101

               
               
               Conread position:34-371
               
               
               Cow position:chr25:2110708-2111029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 21

               
               
               Conread position:34-380
               
               
               Cow position:chr25:20069350-20069693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):155, 36

               
               
               Conread position:34-381
               
               
               Cow position:chr25:27531642-27531303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:238
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):118, 35

               
               
               Conread position:34-381
               
               
               Cow position:chr25:38972457-38972807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):152, 39

               
               
               Conread position:34-382
               
               
               Cow position:chr25:5792177-5791829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):154, 9

               
               
               Conread position:35-329
               
               
               Cow position:chr25:20403095-20402797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 144

               
               
               Conread position:35-348
               
               
               Cow position:chr25:16866862-16867167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):223, 64

               
               
               Conread position:35-364
               
               
               Cow position:chr25:17658239-17658562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 144

               
               
               Conread position:35-371
               
               
               Cow position:chr25:10643682-10643347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 22

               
               
               Conread position:35-386
               
               
               Cow position:chr25:787897-788240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):153, 39

               
               
               Conread position:35-417
               
               
               Cow position:chr25:5514633-5515014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 96

               
               
               Conread position:40-329
               
               
               Cow position:chr25:4548093-4547801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):69, 101

               
               
               Conread position:40-355
               
               
               Cow position:chr25:35608097-35607777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):103, 56

               
               
               Conread position:40-377
               
               
               Cow position:chr25:3992419-3992750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):148, 204

               
               
               Conread position:40-390
               
               
               Cow position:chr25:4680869-4681213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):218, 68

               
               
               Conread position:42-379
               
               
               Cow position:chr25:16922163-16921827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 124

               
               
               Conread position:43-386
               
               
               Cow position:chr25:35347535-35347884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:243
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):97, 53

               
               
               Conread position:44-316
               
               
               Cow position:chr25:27621716-27621991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):108, 11

               
               
               Conread position:45-337
               
               
               Cow position:chr25:26238503-26238796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 206

               
               
               Conread position:46-308
               
               
               Cow position:chr25:9842642-9842897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):128, 11

               
               
               Conread position:49-364
               
               
               Cow position:chr25:40321655-40321343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):46, 70

               
               
               Conread position:50-292
               
               
               Cow position:chr25:11051022-11051256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):208, 129

               
               
               Conread position:84-383
               
               
               Cow position:chr25:9961493-9961196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):104, 21

               
               
               Conread position:87-371
               
               
               Cow position:chr25:6424905-6424626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):171, 35

               
               
               Conread position:105-359
               
               
               Cow position:chr25:23407150-23406888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):31, 52

               
               
               Conread position:105-386
               
               
               Cow position:chr25:12817067-12817351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):83, 76

               
               
               Conread position:115-371
               
               
               Cow position:chr25:6474396-6474135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):40, 66

               
               
               Conread position:124-364
               
               
               Cow position:chr25:21895174-21894932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):35, 44

               
               
               Conread position:128-313
               
               
               Cow position:chr25:10330677-10330500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):130, 67

               
               
               Conread position:141-383
               
               
               Cow position:chr25:14196585-14196832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):34, 109

               
               
               Conread position:148-387
               
               
               Cow position:chr25:24452431-24452199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):40, 31

               
               
               Conread position:150-370
               
               
               Cow position:chr25:12778795-12778574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):23, 102

               
               
               Conread position:150-382
               
               
               Cow position:chr25:19679081-19679314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:154-381
               
               
               Cow position:chr25:7581684-7581454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):34, 25

               
               
               Conread position:170-393
               
               
               Cow position:chr25:15377092-15377305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):18, 70

               
               
               Conread position:189-386
               
               
               Cow position:chr25:7329323-7329525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):69, 60

               
               
               Conread position:24-317
               
               
               Cow position:chr26:22180139-22180428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 14

               
               
               Conread position:32-383
               
               
               Cow position:chr26:34108411-34108752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:253
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):71, 9

               
               
               Conread position:33-368
               
               
               Cow position:chr26:7525832-7525499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:245
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):100, 44

               
               
               Conread position:34-294
               
               
               Cow position:chr26:8307871-8307612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):72, 153

               
               
               Conread position:34-300
               
               
               Cow position:chr26:32380947-32381210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):154, 58

               
               
               Conread position:34-329
               
               
               Cow position:chr26:8897248-8896951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):164, 215

               
               
               Conread position:34-367
               
               
               Cow position:chr26:26888491-26888157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 100

               
               
               Conread position:34-397
               
               
               Cow position:chr26:19347541-19347179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):102, 150

               
               
               Conread position:35-318
               
               
               Cow position:chr26:15857322-15857608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):153, 99

               
               
               Conread position:35-329
               
               
               Cow position:chr26:26671099-26670812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 163

               
               
               Conread position:35-361
               
               
               Cow position:chr26:31701463-31701792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 38

               
               
               Conread position:40-317
               
               
               Cow position:chr26:9100103-9099838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):148, 110

               
               
               Conread position:46-359
               
               
               Cow position:chr26:32018874-32019193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):145, 203

               
               
               Conread position:47-496
               
               
               Cow position:chr26:8503915-8504372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:301
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):29, 113

               
               
               Conread position:48-331
               
               
               Cow position:chr26:20292026-20291746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):140, 170

               
               
               Conread position:50-331
               
               
               Cow position:chr26:11263302-11263578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):138, 38

               
               
               Conread position:58-359
               
               
               Cow position:chr26:5473681-5473375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):133, 101

               
               
               Conread position:59-369
               
               
               Cow position:chr26:31889758-31890072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 80

               
               
               Conread position:63-331
               
               
               Cow position:chr26:33202387-33202119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):193, 185

               
               
               Conread position:80-364
               
               
               Cow position:chr26:3182250-3181972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):108, 43

               
               
               Conread position:80-368
               
               
               Cow position:chr26:13021462-13021168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 170

               
               
               Conread position:84-329
               
               
               Cow position:chr26:6322292-6322538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):104, 50

               
               
               Conread position:90-368
               
               
               Cow position:chr26:27491804-27491524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):168, 65

               
               
               Conread position:98-307
               
               
               Cow position:chr26:29933048-29932850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:140-387
               
               
               Cow position:chr26:32898123-32897874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):48, 109

               
               
               Conread position:144-384
               
               
               Cow position:chr26:8810884-8811124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):44, 93

               
               
               Conread position:154-387
               
               
               Cow position:chr26:28760324-28760096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):36, 44

               
               
               Conread position:181-383
               
               
               Cow position:chr26:10764008-10764207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 65

               
               
               Conread position:184-387
               
               
               Cow position:chr26:33857404-33857199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):74, 61

               
               
               Conread position:187-364
               
               
               Cow position:chr26:25526042-25526220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):70, 61

               
               
               Conread position:33-300
               
               
               Cow position:chr27:15644125-15644392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):158, 216

               
               
               Conread position:33-327
               
               
               Cow position:chr27:18922782-18922491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 146

               
               
               Conread position:34-274
               
               
               Cow position:chr27:427450-427216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):139, 87

               
               
               Conread position:34-333
               
               
               Cow position:chr27:21408220-21408526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 36

               
               
               Conread position:34-337
               
               
               Cow position:chr27:22179456-22179765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):97, 59

               
               
               Conread position:34-368
               
               
               Cow position:chr27:4829484-4829805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):153, 42

               
               
               Conread position:34-371
               
               
               Cow position:chr27:23632927-23632588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):153, 53

               
               
               Conread position:34-383
               
               
               Cow position:chr27:23472579-23472237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:248
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):142, 53

               
               
               Conread position:34-387
               
               
               Cow position:chr27:26433483-26433833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):90, 101

               
               
               Conread position:35-337
               
               
               Cow position:chr27:13317635-13317930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):153, 108

               
               
               Conread position:35-387
               
               
               Cow position:chr27:1058353-1058703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):102, 67

               
               
               Conread position:35-387
               
               
               Cow position:chr27:31230765-31231112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 101

               
               
               Conread position:40-376
               
               
               Cow position:chr27:435567-435223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):124, 63

               
               
               Conread position:40-386
               
               
               Cow position:chr27:30868415-30868762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:240
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):218, 139

               
               
               Conread position:40-387
               
               
               Cow position:chr27:28276593-28276260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):148, 15

               
               
               Conread position:40-397
               
               
               Cow position:chr27:15454538-15454180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 210

               
               
               Conread position:41-348
               
               
               Cow position:chr27:27141916-27141616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):266, 138

               
               
               Conread position:42-299
               
               
               Cow position:chr27:16823133-16822883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):145, 63

               
               
               Conread position:43-300
               
               
               Cow position:chr27:264568-264317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):214, 91

               
               
               Conread position:44-381
               
               
               Cow position:chr27:16787153-16786811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 210

               
               
               Conread position:63-381
               
               
               Cow position:chr27:28207100-28206784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):125, 186

               
               
               Conread position:79-364
               
               
               Cow position:chr27:30362529-30362246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 130

               
               
               Conread position:80-371
               
               
               Cow position:chr27:23882080-23882384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):56, 138

               
               
               Conread position:80-386
               
               
               Cow position:chr27:28189932-28190236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 169

               
               
               Conread position:81-300
               
               
               Cow position:chr27:16099733-16099957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):57, 172

               
               
               Conread position:94-352
               
               
               Cow position:chr27:20067716-20067964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):95, 52

               
               
               Conread position:99-383
               
               
               Cow position:chr27:6550717-6550438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):89, 150

               
               
               Conread position:108-371
               
               
               Cow position:chr27:26508904-26509167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):158, 75

               
               
               Conread position:120-371
               
               
               Cow position:chr27:28518530-28518288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):187, 129

               
               
               Conread position:123-382
               
               
               Cow position:chr27:22220796-22220538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):65, 129

               
               
               Conread position:123-390
               
               
               Cow position:chr27:30890528-30890264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):21, 30

               
               
               Conread position:128-387
               
               
               Cow position:chr27:6500302-6500039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):60, 121

               
               
               Conread position:140-386
               
               
               Cow position:chr27:24321413-24321164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:144-337
               
               
               Cow position:chr27:28038116-28038312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):44, 105

               
               
               Conread position:149-348
               
               
               Cow position:chr27:21452854-21453059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):39, 32

               
               
               Conread position:150-387
               
               
               Cow position:chr27:27640777-27641024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):35, 29

               
               
               Conread position:152-387
               
               
               Cow position:chr27:18593481-18593247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):114, 32

               
               
               Conread position:160-382
               
               
               Cow position:chr27:26885046-26885270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 21

               
               
               Conread position:162-390
               
               
               Cow position:chr27:19685511-19685738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):26, 80

               
               
               Conread position:206-386
               
               
               Cow position:chr27:19896915-19896733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):52, 42

               
               
               Conread position:208-382
               
               
               Cow position:chr27:15643332-15643152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):50, 40

               
               
               Conread position:6-337
               
               
               Cow position:chr28:15590602-15590918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 55

               
               
               Conread position:22-359
               
               
               Cow position:chr28:30098750-30099093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):169, 227

               
               
               Conread position:24-359
               
               
               Cow position:chr28:9267723-9268058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:235
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):167, 20

               
               
               Conread position:33-300
               
               
               Cow position:chr28:1811111-1810849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):158, 50

               
               
               Conread position:33-300
               
               
               Cow position:chr28:5361385-5361118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):158, 216

               
               
               Conread position:33-300
               
               
               Cow position:chr28:22254307-22254049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):158, 69

               
               
               Conread position:33-397
               
               
               Cow position:chr28:9285733-9285381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:261
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):155, 47

               
               
               Conread position:34-313
               
               
               Cow position:chr28:11733494-11733213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):153, 215

               
               
               Conread position:34-329
               
               
               Cow position:chr28:8372102-8372397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 107

               
               
               Conread position:34-329
               
               
               Cow position:chr28:14657328-14657625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:220
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):108, 46

               
               
               Conread position:34-340
               
               
               Cow position:chr28:7268302-7268002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):154, 91

               
               
               Conread position:34-350
               
               
               Cow position:chr28:12430237-12430555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):12, 128

               
               
               Conread position:34-359
               
               
               Cow position:chr28:786543-786874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):157, 303

               
               
               Conread position:34-361
               
               
               Cow position:chr28:18590892-18591226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):44, 140

               
               
               Conread position:35-310
               
               
               Cow position:chr28:21104212-21103941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):153, 99

               
               
               Conread position:35-371
               
               
               Cow position:chr28:17316496-17316836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 84

               
               
               Conread position:35-386
               
               
               Cow position:chr28:21868083-21868440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 145

               
               
               Conread position:35-388
               
               
               Cow position:chr28:11426904-11426556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:251
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):232, 78

               
               
               Conread position:40-335
               
               
               Cow position:chr28:5805156-5805448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:223
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):99, 203

               
               
               Conread position:40-371
               
               
               Cow position:chr28:5129075-5128763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):218, 78

               
               
               Conread position:40-380
               
               
               Cow position:chr28:3024271-3023939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 8

               
               
               Conread position:42-383
               
               
               Cow position:chr28:11752506-11752161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 207

               
               
               Conread position:46-368
               
               
               Cow position:chr28:13267424-13267753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 77

               
               
               Conread position:51-383
               
               
               Cow position:chr28:8787198-8787520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:240
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):253, 134

               
               
               Conread position:58-337
               
               
               Cow position:chr28:16441045-16441316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):133, 76

               
               
               Conread position:59-363
               
               
               Cow position:chr28:17030053-17029759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):75, 62

               
               
               Conread position:65-335
               
               
               Cow position:chr28:1884888-1885163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):125, 256

               
               
               Conread position:67-387
               
               
               Cow position:chr28:12758843-12758517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 118

               
               
               Conread position:80-368
               
               
               Cow position:chr28:14933639-14933932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 99

               
               
               Conread position:81-387
               
               
               Cow position:chr28:4880586-4880283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 161

               
               
               Conread position:81-387
               
               
               Cow position:chr28:7751622-7751318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):109, 24

               
               
               Conread position:82-307
               
               
               Cow position:chr28:25334698-25334926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):21, 168

               
               
               Conread position:148-362
               
               
               Cow position:chr28:33051765-33051988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):40, 167

               
               
               Conread position:151-363
               
               
               Cow position:chr28:5236852-5236643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):107, 34

               
               
               Conread position:154-364
               
               
               Cow position:chr28:22321173-22321388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):34, 25

               
               
               Conread position:155-382
               
               
               Cow position:chr28:4914350-4914114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 94

               
               
               Conread position:166-383
               
               
               Cow position:chr28:23775808-23776026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 83

               
               
               Conread position:167-387
               
               
               Cow position:chr28:16204570-16204346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):22, 83

               
               
               Conread position:169-361
               
               
               Cow position:chr28:3077759-3077948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):135, 79

               
               
               Conread position:187-380
               
               
               Cow position:chr28:7980634-7980444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):71, 61

               
               
               Conread position:187-383
               
               
               Cow position:chr28:2738027-2737826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):70, 61

               
               
               Conread position:193-387
               
               
               Cow position:chr28:25282995-25283183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):73, 31

               
               
               Conread position:3-328
               
               
               Cow position:chr29:14888715-14889040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 18

               
               
               Conread position:33-300
               
               
               Cow position:chr29:20255019-20255286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):158, 146

               
               
               Conread position:34-300
               
               
               Cow position:chr29:3584501-3584234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):153, 249

               
               
               Conread position:34-300
               
               
               Cow position:chr29:38910380-38910113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):155, 215

               
               
               Conread position:34-301
               
               
               Cow position:chr29:29632313-29632046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):157, 147

               
               
               Conread position:34-329
               
               
               Cow position:chr29:19756072-19756363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 215

               
               
               Conread position:34-364
               
               
               Cow position:chr29:24952311-24952643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 21

               
               
               Conread position:34-378
               
               
               Cow position:chr29:28868256-28868605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 7

               
               
               Conread position:34-381
               
               
               Cow position:chr29:36530488-36530837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:237
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):154, 65

               
               
               Conread position:34-386
               
               
               Cow position:chr29:8125969-8125612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 152

               
               
               Conread position:35-377
               
               
               Cow position:chr29:36216744-36217084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:249
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):153, 103

               
               
               Conread position:35-381
               
               
               Cow position:chr29:87388-87045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 82

               
               
               Conread position:35-384
               
               
               Cow position:chr29:6925643-6925986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 139

               
               
               Conread position:35-386
               
               
               Cow position:chr29:19761900-19762247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 99

               
               
               Conread position:40-329
               
               
               Cow position:chr29:4875274-4874977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:214
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):45, 216

               
               
               Conread position:42-317
               
               
               Cow position:chr29:26290949-26290675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):144, 91

               
               
               Conread position:42-381
               
               
               Cow position:chr29:7041201-7040872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 61

               
               
               Conread position:48-386
               
               
               Cow position:chr29:23874095-23874436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:241
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):128, 75

               
               
               Conread position:50-349
               
               
               Cow position:chr29:41850177-41849877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):95, 9

               
               
               Conread position:52-329
               
               
               Cow position:chr29:20429327-20429052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):138, 82

               
               
               Conread position:60-330
               
               
               Cow position:chr29:40903069-40902803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):247, 188

               
               
               Conread position:62-387
               
               
               Cow position:chr29:1325093-1325420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):259, 117

               
               
               Conread position:80-292
               
               
               Cow position:chr29:1582955-1582744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):186, 36

               
               
               Conread position:81-306
               
               
               Cow position:chr29:12901433-12901218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):177, 62

               
               
               Conread position:81-383
               
               
               Cow position:chr29:40892043-40891722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):68, 180

               
               
               Conread position:83-377
               
               
               Cow position:chr29:7408217-7407921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):13, 168

               
               
               Conread position:107-300
               
               
               Cow position:chr29:22720828-22721017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):81, 26

               
               
               Conread position:120-367
               
               
               Cow position:chr29:22162547-22162295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):37, 129

               
               
               Conread position:121-364
               
               
               Cow position:chr29:11562325-11562568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:132-361
               
               
               Cow position:chr29:34360072-34359854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):56, 73

               
               
               Conread position:133-383
               
               
               Cow position:chr29:3395833-3396078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):55, 109

               
               
               Conread position:135-368
               
               
               Cow position:chr29:4065814-4066045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):28, 6

               
               
               Conread position:149-363
               
               
               Cow position:chr29:16756794-16757012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):40, 30

               
               
               Conread position:155-371
               
               
               Cow position:chr29:356071-356281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):31, 94

               
               
               Conread position:164-368
               
               
               Cow position:chr29:20903534-20903328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):24, 78

               
               
               Conread position:173-382
               
               
               Cow position:chr29:4520098-4520309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):17, 76

               
               
               Conread position:187-364
               
               
               Cow position:chr29:2532839-2533014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):70, 61

               
               
               Conread position:22-309
               
               
               Cow position:chr3:44535171-44534894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):19, 108

               
               
               Conread position:31-371
               
               
               Cow position:chr3:49119432-49119086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 13

               
               
               Conread position:31-413
               
               
               Cow position:chr3:73211583-73211967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:257
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):160, 336

               
               
               Conread position:33-300
               
               
               Cow position:chr3:48605296-48605564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):32, 264

               
               
               Conread position:33-300
               
               
               Cow position:chr3:49416082-49415815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):154, 216

               
               
               Conread position:33-359
               
               
               Cow position:chr3:21100572-21100901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):158, 107

               
               
               Conread position:33-359
               
               
               Cow position:chr3:45026177-45025846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):158, 111

               
               
               Conread position:33-387
               
               
               Cow position:chr3:9843179-9843541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:253
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):111, 152

               
               
               Conread position:34-298
               
               
               Cow position:chr3:15655542-15655285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):156, 113

               
               
               Conread position:34-298
               
               
               Cow position:chr3:40101069-40100808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):159, 74

               
               
               Conread position:34-300
               
               
               Cow position:chr3:68302930-68303197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 215

               
               
               Conread position:34-316
               
               
               Cow position:chr3:34526042-34525758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):159, 144

               
               
               Conread position:34-329
               
               
               Cow position:chr3:77496419-77496715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 91

               
               
               Conread position:34-333
               
               
               Cow position:chr3:7338175-7337870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):141, 83

               
               
               Conread position:34-368
               
               
               Cow position:chr3:74088559-74088233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 125

               
               
               Conread position:34-380
               
               
               Cow position:chr3:20663936-20663584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 215

               
               
               Conread position:34-381
               
               
               Cow position:chr3:15387807-15388163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:248
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):116, 182

               
               
               Conread position:34-382
               
               
               Cow position:chr3:5851325-5850980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):273, 263

               
               
               Conread position:34-383
               
               
               Cow position:chr3:58540937-58540575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):63, 159

               
               
               Conread position:34-387
               
               
               Cow position:chr3:36570438-36570091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):30, 57

               
               
               Conread position:34-387
               
               
               Cow position:chr3:70566136-70565784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 213

               
               
               Conread position:34-415
               
               
               Cow position:chr3:17937249-17936856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:269
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):122, 227

               
               
               Conread position:35-317
               
               
               Cow position:chr3:4457471-4457187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 56

               
               
               Conread position:35-350
               
               
               Cow position:chr3:6265109-6265431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 215

               
               
               Conread position:35-351
               
               
               Cow position:chr3:62827010-62826699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):153, 84

               
               
               Conread position:35-364
               
               
               Cow position:chr3:72675691-72676025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 60

               
               
               Conread position:35-371
               
               
               Cow position:chr3:13899850-13899506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 214

               
               
               Conread position:35-371
               
               
               Cow position:chr3:73708663-73708987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:244
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):272, 20

               
               
               Conread position:35-371
               
               
               Cow position:chr3:79592285-79591942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 99

               
               
               Conread position:35-387
               
               
               Cow position:chr3:48269466-48269819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 214

               
               
               Conread position:35-387
               
               
               Cow position:chr3:80082214-80081867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:241
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):295, 206

               
               
               Conread position:38-388
               
               
               Cow position:chr3:31500961-31501307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 82

               
               
               Conread position:40-364
               
               
               Cow position:chr3:8716855-8717185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 139

               
               
               Conread position:40-386
               
               
               Cow position:chr3:25690401-25690746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:247
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):148, 83

               
               
               Conread position:42-299
               
               
               Cow position:chr3:60892240-60892496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):14, 129

               
               
               Conread position:42-359
               
               
               Cow position:chr3:59865258-59865580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):226, 206

               
               
               Conread position:44-364
               
               
               Cow position:chr3:31298545-31298220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):144, 96

               
               
               Conread position:46-329
               
               
               Cow position:chr3:58158838-58158569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):141, 75

               
               
               Conread position:47-368
               
               
               Cow position:chr3:46350262-46350607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):71, 214

               
               
               Conread position:48-333
               
               
               Cow position:chr3:53593083-53592796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 84

               
               
               Conread position:50-367
               
               
               Cow position:chr3:74233828-74234126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):208, 91

               
               
               Conread position:52-386
               
               
               Cow position:chr3:61191297-61190970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):137, 181

               
               
               Conread position:55-364
               
               
               Cow position:chr3:18066757-18067068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 203

               
               
               Conread position:55-364
               
               
               Cow position:chr3:49461314-49460997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 124

               
               
               Conread position:80-375
               
               
               Cow position:chr3:57763855-57764171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):56, 185

               
               
               Conread position:84-367
               
               
               Cow position:chr3:70895699-70895982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):104, 19

               
               
               Conread position:88-349
               
               
               Cow position:chr3:61467273-61467525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):168, 50

               
               
               Conread position:92-361
               
               
               Cow position:chr3:61857156-61857433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):96, 157

               
               
               Conread position:98-368
               
               
               Cow position:chr3:78076858-78077126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):90, 36

               
               
               Conread position:105-368
               
               
               Cow position:chr3:83920874-83921134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):84, 29

               
               
               Conread position:114-363
               
               
               Cow position:chr3:78200949-78201201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):74, 135

               
               
               Conread position:114-365
               
               
               Cow position:chr3:57754798-57754544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):77, 51

               
               
               Conread position:114-371
               
               
               Cow position:chr3:67704218-67704482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):36, 142

               
               
               Conread position:120-382
               
               
               Cow position:chr3:53790856-53790586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):60, 76

               
               
               Conread position:126-381
               
               
               Cow position:chr3:27274233-27274479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):14, 68

               
               
               Conread position:126-390
               
               
               Cow position:chr3:12286930-12287188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):65, 10

               
               
               Conread position:127-364
               
               
               Cow position:chr3:83934209-83934443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 72

               
               
               Conread position:128-377
               
               
               Cow position:chr3:2518841-2518587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 121

               
               
               Conread position:132-363
               
               
               Cow position:chr3:30463466-30463238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):56, 117

               
               
               Conread position:136-383
               
               
               Cow position:chr3:74533051-74533300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):5, 114

               
               
               Conread position:138-329
               
               
               Cow position:chr3:79148570-79148375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):50, 111

               
               
               Conread position:141-357
               
               
               Cow position:chr3:51609525-51609747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):51, 108

               
               
               Conread position:141-367
               
               
               Cow position:chr3:45534590-45534361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):47, 40

               
               
               Conread position:141-380
               
               
               Cow position:chr3:14602004-14601763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):47, 38

               
               
               Conread position:141-380
               
               
               Cow position:chr3:66885329-66885091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):47, 106

               
               
               Conread position:141-380
               
               
               Cow position:chr3:73759808-73759566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 11

               
               
               Conread position:142-363
               
               
               Cow position:chr3:29812954-29813176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):45, 37

               
               
               Conread position:148-329
               
               
               Cow position:chr3:39970156-39969974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 101

               
               
               Conread position:148-367
               
               
               Cow position:chr3:23944813-23945033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:148-371
               
               
               Cow position:chr3:78946123-78945895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:148-381
               
               
               Cow position:chr3:67744912-67744679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:151-368
               
               
               Cow position:chr3:17456550-17456331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 98

               
               
               Conread position:151-386
               
               
               Cow position:chr3:81277985-81277744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):23, 99

               
               
               Conread position:154-336
               
               
               Cow position:chr3:18607090-18607275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):26, 99

               
               
               Conread position:154-371
               
               
               Cow position:chr3:63861179-63860952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):34, 95

               
               
               Conread position:159-383
               
               
               Cow position:chr3:54945852-54946079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):99, 89

               
               
               Conread position:163-371
               
               
               Cow position:chr3:17451203-17451002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):25, 86

               
               
               Conread position:167-364
               
               
               Cow position:chr3:73394851-73395054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 83

               
               
               Conread position:187-394
               
               
               Cow position:chr3:44932264-44932473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):69, 61

               
               
               Conread position:208-384
               
               
               Cow position:chr3:22900216-22900039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):50, 40

               
               
               Conread position:33-334
               
               
               Cow position:chr4:62471685-62471989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 216

               
               
               Conread position:34-295
               
               
               Cow position:chr4:46477320-46477059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):154, 107

               
               
               Conread position:34-329
               
               
               Cow position:chr4:46176850-46176549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):73, 220

               
               
               Conread position:34-337
               
               
               Cow position:chr4:6653365-6653649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):154, 21

               
               
               Conread position:34-339
               
               
               Cow position:chr4:23655612-23655919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 151

               
               
               Conread position:34-344
               
               
               Cow position:chr4:26009064-26009381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 215

               
               
               Conread position:34-361
               
               
               Cow position:chr4:21058772-21058437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 150

               
               
               Conread position:34-362
               
               
               Cow position:chr4:962032-961714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):107, 62

               
               
               Conread position:34-364
               
               
               Cow position:chr4:10731838-10732172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 65

               
               
               Conread position:34-371
               
               
               Cow position:chr4:22138616-22138273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 80

               
               
               Conread position:34-377
               
               
               Cow position:chr4:4672715-4672369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 113

               
               
               Conread position:34-381
               
               
               Cow position:chr4:66112455-66112107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 7

               
               
               Conread position:34-383
               
               
               Cow position:chr4:24458481-24458137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 147

               
               
               Conread position:34-387
               
               
               Cow position:chr4:4185739-4186093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):118, 107

               
               
               Conread position:34-387
               
               
               Cow position:chr4:36892974-36893330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 91

               
               
               Conread position:34-393
               
               
               Cow position:chr4:19306874-19307237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 145

               
               
               Conread position:34-393
               
               
               Cow position:chr4:66173176-66172821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 103

               
               
               Conread position:34-472
               
               
               Cow position:chr4:27292342-27291902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:270
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):22, 80

               
               
               Conread position:35-314
               
               
               Cow position:chr4:53100428-53100704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):151, 28

               
               
               Conread position:35-364
               
               
               Cow position:chr4:23853824-23854139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):100, 70

               
               
               Conread position:35-367
               
               
               Cow position:chr4:58834780-58834454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):155, 78

               
               
               Conread position:35-371
               
               
               Cow position:chr4:43543115-43542780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 215

               
               
               Conread position:35-376
               
               
               Cow position:chr4:59871124-59871442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):266, 105

               
               
               Conread position:35-383
               
               
               Cow position:chr4:45644694-45644343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 215

               
               
               Conread position:35-386
               
               
               Cow position:chr4:19584323-19584687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 216

               
               
               Conread position:35-387
               
               
               Cow position:chr4:14470949-14470597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 149

               
               
               Conread position:40-329
               
               
               Cow position:chr4:65826241-65825942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):106, 56

               
               
               Conread position:40-380
               
               
               Cow position:chr4:19141919-19142251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):148, 73

               
               
               Conread position:40-383
               
               
               Cow position:chr4:21392172-21391845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):148, 13

               
               
               Conread position:40-386
               
               
               Cow position:chr4:13694044-13693702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):140, 13

               
               
               Conread position:41-382
               
               
               Cow position:chr4:3850182-3850519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 82

               
               
               Conread position:42-359
               
               
               Cow position:chr4:10136168-10136481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):216, 139

               
               
               Conread position:44-387
               
               
               Cow position:chr4:21532001-21531672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:237
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):47, 59

               
               
               Conread position:54-364
               
               
               Cow position:chr4:42232307-42232607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):164, 11

               
               
               Conread position:55-381
               
               
               Cow position:chr4:22743968-22744287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):203, 74

               
               
               Conread position:55-382
               
               
               Cow position:chr4:17112239-17111908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:236
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):89, 188

               
               
               Conread position:70-387
               
               
               Cow position:chr4:10916183-10915870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):182, 114

               
               
               Conread position:73-387
               
               
               Cow position:chr4:37470211-37470526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):112, 62

               
               
               Conread position:78-363
               
               
               Cow position:chr4:34208590-34208883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):110, 133

               
               
               Conread position:89-394
               
               
               Cow position:chr4:37915656-37915361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):98, 80

               
               
               Conread position:104-360
               
               
               Cow position:chr4:34310767-34310505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):79, 145

               
               
               Conread position:114-501
               
               
               Cow position:chr4:49424542-49424917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:256
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):74, 30

               
               
               Conread position:117-329
               
               
               Cow position:chr4:48182416-48182629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):57, 90

               
               
               Conread position:119-315
               
               
               Cow position:chr4:10703982-10703782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):69, 130

               
               
               Conread position:124-311
               
               
               Cow position:chr4:40056675-40056863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):63, 125

               
               
               Conread position:126-361
               
               
               Cow position:chr4:620444-620213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):9, 35

               
               
               Conread position:127-361
               
               
               Cow position:chr4:54468585-54468346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):47, 123

               
               
               Conread position:136-381
               
               
               Cow position:chr4:4321286-4321034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):52, 113

               
               
               Conread position:138-329
               
               
               Cow position:chr4:46550106-46550298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 111

               
               
               Conread position:141-371
               
               
               Cow position:chr4:5999469-5999236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):47, 64

               
               
               Conread position:141-393
               
               
               Cow position:chr4:5461128-5460888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):159, 38

               
               
               Conread position:142-351
               
               
               Cow position:chr4:27529839-27530053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):45, 107

               
               
               Conread position:144-303
               
               
               Cow position:chr4:61969910-61969750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):44, 106

               
               
               Conread position:144-379
               
               
               Cow position:chr4:47348560-47348791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 65

               
               
               Conread position:148-368
               
               
               Cow position:chr4:44073038-44072813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:148-381
               
               
               Cow position:chr4:34337530-34337306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):151, 31

               
               
               Conread position:148-387
               
               
               Cow position:chr4:51739971-51739738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 102

               
               
               Conread position:151-376
               
               
               Cow position:chr4:48235374-48235598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 98

               
               
               Conread position:151-382
               
               
               Cow position:chr4:33612628-33612392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):37, 98

               
               
               Conread position:153-300
               
               
               Cow position:chr4:46385841-46385693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 96

               
               
               Conread position:155-331
               
               
               Cow position:chr4:123462-123284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 94

               
               
               Conread position:155-371
               
               
               Cow position:chr4:41867183-41867396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):33, 94

               
               
               Conread position:159-300
               
               
               Cow position:chr4:51630400-51630542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):28, 90

               
               
               Conread position:159-339
               
               
               Cow position:chr4:2536576-2536753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):148, 58

               
               
               Conread position:162-356
               
               
               Cow position:chr4:41292234-41292041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):26, 87

               
               
               Conread position:185-361
               
               
               Cow position:chr4:23911819-23911637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):81, 23

               
               
               Conread position:187-390
               
               
               Cow position:chr4:19463262-19463471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):14, 63

               
               
               Conread position:13-387
               
               
               Cow position:chr5:6044916-6045298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 237

               
               
               Conread position:22-371
               
               
               Cow position:chr5:48828785-48829145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 235

               
               
               Conread position:32-308
               
               
               Cow position:chr5:67212031-67212304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):156, 10

               
               
               Conread position:33-300
               
               
               Cow position:chr5:29969283-29969550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):160, 146

               
               
               Conread position:33-301
               
               
               Cow position:chr5:44369545-44369812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):158, 27

               
               
               Conread position:33-376
               
               
               Cow position:chr5:9099785-9099440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:234
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):148, 158

               
               
               Conread position:33-397
               
               
               Cow position:chr5:8178832-8179194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):225, 154

               
               
               Conread position:33-397
               
               
               Cow position:chr5:47750600-47750963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):160, 101

               
               
               Conread position:34-307
               
               
               Cow position:chr5:19969381-19969108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):154, 215

               
               
               Conread position:34-327
               
               
               Cow position:chr5:1105209-1104923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):154, 107

               
               
               Conread position:34-329
               
               
               Cow position:chr5:47889064-47888766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 215

               
               
               Conread position:34-333
               
               
               Cow position:chr5:13691924-13691621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 71

               
               
               Conread position:34-334
               
               
               Cow position:chr5:15363544-15363842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):154, 108

               
               
               Conread position:34-355
               
               
               Cow position:chr5:35826252-35826576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):154, 57

               
               
               Conread position:34-371
               
               
               Cow position:chr5:62172057-62172403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):101, 225

               
               
               Conread position:34-377
               
               
               Cow position:chr5:14550936-14550586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 218

               
               
               Conread position:34-380
               
               
               Cow position:chr5:36679795-36679437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):98, 224

               
               
               Conread position:34-381
               
               
               Cow position:chr5:47317317-47316970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):297, 151

               
               
               Conread position:34-381
               
               
               Cow position:chr5:50599717-50600052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:248
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):224, 144

               
               
               Conread position:34-382
               
               
               Cow position:chr5:26467273-26467625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 118

               
               
               Conread position:34-382
               
               
               Cow position:chr5:29827704-29828049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 208

               
               
               Conread position:34-386
               
               
               Cow position:chr5:19470532-19470186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 149

               
               
               Conread position:34-386
               
               
               Cow position:chr5:47871400-47871036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 121

               
               
               Conread position:34-387
               
               
               Cow position:chr5:52165528-52165173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):108, 119

               
               
               Conread position:35-329
               
               
               Cow position:chr5:39299180-39299475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):231, 216

               
               
               Conread position:35-337
               
               
               Cow position:chr5:61030577-61030271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):159, 215

               
               
               Conread position:35-363
               
               
               Cow position:chr5:55176544-55176871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 117

               
               
               Conread position:35-371
               
               
               Cow position:chr5:40357235-40356876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:240
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):108, 202

               
               
               Conread position:35-371
               
               
               Cow position:chr5:51151711-51151369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:235
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):130, 145

               
               
               Conread position:35-371
               
               
               Cow position:chr5:62107837-62107502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):152, 51

               
               
               Conread position:35-381
               
               
               Cow position:chr5:27015345-27015680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:248
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):223, 51

               
               
               Conread position:35-381
               
               
               Cow position:chr5:30276347-30276694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 148

               
               
               Conread position:35-383
               
               
               Cow position:chr5:50821440-50821785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:244
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):153, 195

               
               
               Conread position:39-388
               
               
               Cow position:chr5:17631217-17630873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):114, 213

               
               
               Conread position:40-371
               
               
               Cow position:chr5:44994388-44994053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):91, 147

               
               
               Conread position:40-386
               
               
               Cow position:chr5:14314180-14314528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 59

               
               
               Conread position:40-414
               
               
               Cow position:chr5:56523831-56524198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 139

               
               
               Conread position:41-364
               
               
               Cow position:chr5:65776734-65776400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):102, 79

               
               
               Conread position:41-387
               
               
               Cow position:chr5:57935455-57935104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 100

               
               
               Conread position:42-376
               
               
               Cow position:chr5:21524824-21525164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 44

               
               
               Conread position:44-408
               
               
               Cow position:chr5:45846032-45845665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 108

               
               
               Conread position:55-364
               
               
               Cow position:chr5:26990070-26990374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):58, 45

               
               
               Conread position:59-307
               
               
               Cow position:chr5:66119580-66119330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):85, 193

               
               
               Conread position:79-368
               
               
               Cow position:chr5:65941556-65941266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):109, 26

               
               
               Conread position:80-380
               
               
               Cow position:chr5:28224152-28224452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):178, 118

               
               
               Conread position:90-417
               
               
               Cow position:chr5:59443544-59443220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:226
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):217, 207

               
               
               Conread position:94-337
               
               
               Cow position:chr5:63917696-63917457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):94, 47

               
               
               Conread position:117-354
               
               
               Cow position:chr5:64139297-64139538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):68, 62

               
               
               Conread position:123-329
               
               
               Cow position:chr5:37366630-37366844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):39, 133

               
               
               Conread position:129-295
               
               
               Cow position:chr5:31640173-31640340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 120

               
               
               Conread position:135-363
               
               
               Cow position:chr5:63388547-63388775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):55, 6

               
               
               Conread position:140-337
               
               
               Cow position:chr5:67243681-67243880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):34, 110

               
               
               Conread position:141-361
               
               
               Cow position:chr5:35684692-35684915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 111

               
               
               Conread position:141-371
               
               
               Cow position:chr5:55967125-55966890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):50, 108

               
               
               Conread position:141-386
               
               
               Cow position:chr5:51999977-52000227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):117, 107

               
               
               Conread position:144-291
               
               
               Cow position:chr5:32087960-32087812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):44, 105

               
               
               Conread position:147-368
               
               
               Cow position:chr5:9859954-9859728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):110, 101

               
               
               Conread position:148-379
               
               
               Cow position:chr5:45036785-45037019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 35

               
               
               Conread position:152-371
               
               
               Cow position:chr5:56070622-56070845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):116, 96

               
               
               Conread position:154-362
               
               
               Cow position:chr5:16025689-16025481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):31, 9

               
               
               Conread position:156-382
               
               
               Cow position:chr5:15426301-15426529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):102, 28

               
               
               Conread position:162-368
               
               
               Cow position:chr5:56028751-56028542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):26, 17

               
               
               Conread position:186-387
               
               
               Cow position:chr5:7044906-7044701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):121, 8

               
               
               Conread position:213-366
               
               
               Cow position:chr5:41010166-41010013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):45, 38

               
               
               Conread position:22-368
               
               
               Cow position:chr6:2607266-2607615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 110

               
               
               Conread position:33-332
               
               
               Cow position:chr6:45666126-45665825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):148, 176

               
               
               Conread position:33-383
               
               
               Cow position:chr6:65870689-65871044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 47

               
               
               Conread position:33-386
               
               
               Cow position:chr6:58031787-58032139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):154, 96

               
               
               Conread position:34-299
               
               
               Cow position:chr6:7253773-7253495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):107, 227

               
               
               Conread position:34-302
               
               
               Cow position:chr6:37331629-37331891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):44, 94

               
               
               Conread position:34-315
               
               
               Cow position:chr6:13741363-13741640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):260, 89

               
               
               Conread position:34-316
               
               
               Cow position:chr6:12844975-12845256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:217
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):86, 152

               
               
               Conread position:34-317
               
               
               Cow position:chr6:10605349-10605637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 216

               
               
               Conread position:34-329
               
               
               Cow position:chr6:18080850-18080550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):19, 180

               
               
               Conread position:34-329
               
               
               Cow position:chr6:46666772-46667069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):101, 33

               
               
               Conread position:34-333
               
               
               Cow position:chr6:21312090-21311787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 100

               
               
               Conread position:34-338
               
               
               Cow position:chr6:24031040-24031347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):154, 215

               
               
               Conread position:34-362
               
               
               Cow position:chr6:12550933-12551262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 145

               
               
               Conread position:34-364
               
               
               Cow position:chr6:61631948-61631612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):154, 100

               
               
               Conread position:34-380
               
               
               Cow position:chr6:2546909-2547258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 24

               
               
               Conread position:35-300
               
               
               Cow position:chr6:25358743-25359003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):206, 149

               
               
               Conread position:35-300
               
               
               Cow position:chr6:54806889-54807155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):155, 214

               
               
               Conread position:35-334
               
               
               Cow position:chr6:41824162-41823859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):145, 230

               
               
               Conread position:35-362
               
               
               Cow position:chr6:8804877-8804536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):107, 73

               
               
               Conread position:35-364
               
               
               Cow position:chr6:5958349-5958030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 70

               
               
               Conread position:35-371
               
               
               Cow position:chr6:606928-607263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 214

               
               
               Conread position:35-387
               
               
               Cow position:chr6:1770528-1770180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 27

               
               
               Conread position:36-337
               
               
               Cow position:chr6:12623138-12623437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 149

               
               
               Conread position:40-329
               
               
               Cow position:chr6:54140490-54140767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):148, 15

               
               
               Conread position:40-350
               
               
               Cow position:chr6:1784094-1783795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):148, 79

               
               
               Conread position:41-383
               
               
               Cow position:chr6:17090265-17090614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):93, 73

               
               
               Conread position:47-393
               
               
               Cow position:chr6:35181574-35181236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 69

               
               
               Conread position:59-383
               
               
               Cow position:chr6:5609768-5609431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):83, 211

               
               
               Conread position:80-367
               
               
               Cow position:chr6:34196437-34196151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):108, 172

               
               
               Conread position:81-386
               
               
               Cow position:chr6:63272905-63272593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):69, 171

               
               
               Conread position:82-298
               
               
               Cow position:chr6:642864-642647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):107, 169

               
               
               Conread position:94-371
               
               
               Cow position:chr6:42961642-42961358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):93, 163

               
               
               Conread position:105-398
               
               
               Cow position:chr6:35471790-35471488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:219
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):83, 147

               
               
               Conread position:120-313
               
               
               Cow position:chr6:3719257-3719061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):57, 131

               
               
               Conread position:120-387
               
               
               Cow position:chr6:31535821-31535551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):32, 130

               
               
               Conread position:124-328
               
               
               Cow position:chr6:1002479-1002277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):52, 39

               
               
               Conread position:132-377
               
               
               Cow position:chr6:13040215-13040459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):44, 80

               
               
               Conread position:141-377
               
               
               Cow position:chr6:60350527-60350285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):47, 108

               
               
               Conread position:147-328
               
               
               Cow position:chr6:59302046-59301864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):41, 12

               
               
               Conread position:147-364
               
               
               Cow position:chr6:45160513-45160298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 39

               
               
               Conread position:148-367
               
               
               Cow position:chr6:39994682-39994462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):40, 104

               
               
               Conread position:149-318
               
               
               Cow position:chr6:21184736-21184904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):39, 93

               
               
               Conread position:149-368
               
               
               Cow position:chr6:34031448-34031662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 89

               
               
               Conread position:159-364
               
               
               Cow position:chr6:53139139-53138925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):28, 90

               
               
               Conread position:160-386
               
               
               Cow position:chr6:24961936-24962161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):28, 89

               
               
               Conread position:208-387
               
               
               Cow position:chr6:44984166-44984348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):99, 40

               
               
               Conread position:1-162
               
               
               Cow position:chr7:8052827-8052666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-361
               
               
               Cow position:chr7:14187604-14187243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 244

               
               
               Conread position:13-355
               
               
               Cow position:chr7:10449137-10448791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):175, 196

               
               
               Conread position:22-354
               
               
               Cow position:chr7:19912667-19912333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 227

               
               
               Conread position:22-357
               
               
               Cow position:chr7:194021-193680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):169, 227

               
               
               Conread position:24-386
               
               
               Cow position:chr7:46823337-46823690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:262
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):57, 8

               
               
               Conread position:33-299
               
               
               Cow position:chr7:11419483-11419220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):154, 101

               
               
               Conread position:33-299
               
               
               Cow position:chr7:39795764-39796030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):158, 209

               
               
               Conread position:33-308
               
               
               Cow position:chr7:758952-758680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):225, 151

               
               
               Conread position:33-359
               
               
               Cow position:chr7:1366789-1366456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):140, 217

               
               
               Conread position:33-382
               
               
               Cow position:chr7:54712082-54712435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 138

               
               
               Conread position:34-294
               
               
               Cow position:chr7:6057796-6058059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:34-294
               
               
               Cow position:chr7:64180350-64180610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):212, 222

               
               
               Conread position:34-351
               
               
               Cow position:chr7:46857287-46856974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):224, 114

               
               
               Conread position:34-371
               
               
               Cow position:chr7:23569073-23568733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 218

               
               
               Conread position:34-371
               
               
               Cow position:chr7:38081827-38082161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 85

               
               
               Conread position:34-371
               
               
               Cow position:chr7:46148545-46148861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):154, 36

               
               
               Conread position:34-371
               
               
               Cow position:chr7:57911275-57911612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 215

               
               
               Conread position:34-382
               
               
               Cow position:chr7:15608062-15608425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):102, 41

               
               
               Conread position:34-386
               
               
               Cow position:chr7:23646275-23646627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 75

               
               
               Conread position:34-386
               
               
               Cow position:chr7:32894586-32894228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:251
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):140, 218

               
               
               Conread position:34-386
               
               
               Cow position:chr7:58362601-58362973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:258
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):53, 101

               
               
               Conread position:34-387
               
               
               Cow position:chr7:22357820-22357462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 7

               
               
               Conread position:34-387
               
               
               Cow position:chr7:48243344-48243693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 153

               
               
               Conread position:34-388
               
               
               Cow position:chr7:2923309-2923669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 146

               
               
               Conread position:34-388
               
               
               Cow position:chr7:52718972-52718615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):112, 10

               
               
               Conread position:35-319
               
               
               Cow position:chr7:61601701-61601428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):11, 108

               
               
               Conread position:35-322
               
               
               Cow position:chr7:62544254-62543951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):112, 23

               
               
               Conread position:35-331
               
               
               Cow position:chr7:29301083-29300795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):272, 71

               
               
               Conread position:35-356
               
               
               Cow position:chr7:27136160-27136492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):77, 222

               
               
               Conread position:35-364
               
               
               Cow position:chr7:3336871-3336553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):153, 118

               
               
               Conread position:35-367
               
               
               Cow position:chr7:1321221-1320904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):231, 98

               
               
               Conread position:35-381
               
               
               Cow position:chr7:4418791-4418446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):159, 103

               
               
               Conread position:35-382
               
               
               Cow position:chr7:52294803-52295140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:246
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):266, 150

               
               
               Conread position:35-386
               
               
               Cow position:chr7:63771571-63771925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 159

               
               
               Conread position:35-387
               
               
               Cow position:chr7:53053723-53053383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):155, 71

               
               
               Conread position:40-329
               
               
               Cow position:chr7:20779812-20780112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):101, 53

               
               
               Conread position:40-337
               
               
               Cow position:chr7:30276406-30276706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):148, 209

               
               
               Conread position:40-364
               
               
               Cow position:chr7:17816432-17816748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 123

               
               
               Conread position:40-381
               
               
               Cow position:chr7:39929953-39930309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:251
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):13, 195

               
               
               Conread position:40-381
               
               
               Cow position:chr7:40570941-40571287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 209

               
               
               Conread position:41-329
               
               
               Cow position:chr7:4452276-4452563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):139, 89

               
               
               Conread position:44-359
               
               
               Cow position:chr7:27127687-27127367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:222
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):147, 92

               
               
               Conread position:44-382
               
               
               Cow position:chr7:41131631-41131290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):149, 42

               
               
               Conread position:45-299
               
               
               Cow position:chr7:68867787-68868038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):142, 134

               
               
               Conread position:48-303
               
               
               Cow position:chr7:28057434-28057179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):139, 165

               
               
               Conread position:55-393
               
               
               Cow position:chr7:53552252-53551918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:239
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):133, 50

               
               
               Conread position:64-364
               
               
               Cow position:chr7:10513015-10512713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:215
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):124, 203

               
               
               Conread position:78-376
               
               
               Cow position:chr7:23679881-23679581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):110, 51

               
               
               Conread position:79-361
               
               
               Cow position:chr7:62732899-62733180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):67, 74

               
               
               Conread position:79-381
               
               
               Cow position:chr7:39325458-39325749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):108, 50

               
               
               Conread position:87-263
               
               
               Cow position:chr7:56668986-56668809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):104, 165

               
               
               Conread position:91-381
               
               
               Cow position:chr7:40067374-40067676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:221
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):52, 159

               
               
               Conread position:93-359
               
               
               Cow position:chr7:40283670-40283395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 12

               
               
               Conread position:97-363
               
               
               Cow position:chr7:59844032-59843757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):8, 122

               
               
               Conread position:105-329
               
               
               Cow position:chr7:47503396-47503614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):19, 138

               
               
               Conread position:105-335
               
               
               Cow position:chr7:57244349-57244122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):83, 46

               
               
               Conread position:115-386
               
               
               Cow position:chr7:26911686-26911419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):73, 17

               
               
               Conread position:120-329
               
               
               Cow position:chr7:11160248-11160037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):69, 129

               
               
               Conread position:124-371
               
               
               Cow position:chr7:48722148-48721897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):64, 125

               
               
               Conread position:125-380
               
               
               Cow position:chr7:36278052-36278307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 117

               
               
               Conread position:126-387
               
               
               Cow position:chr7:45331304-45331559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):64, 126

               
               
               Conread position:128-300
               
               
               Cow position:chr7:40894282-40894455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 121

               
               
               Conread position:132-364
               
               
               Cow position:chr7:13928389-13928157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):54, 110

               
               
               Conread position:132-382
               
               
               Cow position:chr7:39415670-39415924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):56, 110

               
               
               Conread position:141-364
               
               
               Cow position:chr7:37951955-37952179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:142-367
               
               
               Cow position:chr7:64102633-64102407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):47, 59

               
               
               Conread position:148-382
               
               
               Cow position:chr7:34568981-34569207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:150-371
               
               
               Cow position:chr7:27283462-27283688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 100

               
               
               Conread position:154-368
               
               
               Cow position:chr7:42894238-42894448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):34, 76

               
               
               Conread position:154-371
               
               
               Cow position:chr7:22793134-22793355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):34, 57

               
               
               Conread position:154-386
               
               
               Cow position:chr7:48406713-48406475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):33, 95

               
               
               Conread position:155-381
               
               
               Cow position:chr7:5913991-5914218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):34, 94

               
               
               Conread position:162-408
               
               
               Cow position:chr7:41315643-41315391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):26, 90

               
               
               Conread position:31-329
               
               
               Cow position:chr8:5449237-5448944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:211
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):235, 9

               
               
               Conread position:32-364
               
               
               Cow position:chr8:11605972-11606295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 8

               
               
               Conread position:33-311
               
               
               Cow position:chr8:53320611-53320891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 8

               
               
               Conread position:33-359
               
               
               Cow position:chr8:23752501-23752832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):20, 96

               
               
               Conread position:34-316
               
               
               Cow position:chr8:60488992-60488711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 129

               
               
               Conread position:34-331
               
               
               Cow position:chr8:10337390-10337094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):110, 7

               
               
               Conread position:34-338
               
               
               Cow position:chr8:45245377-45245077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 72

               
               
               Conread position:34-340
               
               
               Cow position:chr8:51318607-51318910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):224, 214

               
               
               Conread position:34-355
               
               
               Cow position:chr8:50949402-50949734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):44, 95

               
               
               Conread position:34-357
               
               
               Cow position:chr8:28884446-28884791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:243
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):48, 231

               
               
               Conread position:34-364
               
               
               Cow position:chr8:16297123-16296785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 215

               
               
               Conread position:34-364
               
               
               Cow position:chr8:36648811-36648488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:239
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):224, 44

               
               
               Conread position:34-364
               
               
               Cow position:chr8:51578897-51579234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 221

               
               
               Conread position:34-364
               
               
               Cow position:chr8:56824386-56824050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):103, 20

               
               
               Conread position:34-371
               
               
               Cow position:chr8:28229833-28229489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):154, 100

               
               
               Conread position:34-381
               
               
               Cow position:chr8:4924199-4924551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 216

               
               
               Conread position:34-382
               
               
               Cow position:chr8:16972894-16972540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 144

               
               
               Conread position:34-386
               
               
               Cow position:chr8:18730074-18730436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 7

               
               
               Conread position:34-387
               
               
               Cow position:chr8:5485241-5484880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 63

               
               
               Conread position:34-387
               
               
               Cow position:chr8:47752280-47751925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 100

               
               
               Conread position:34-394
               
               
               Cow position:chr8:24980328-24980692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:251
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):110, 192

               
               
               Conread position:34-394
               
               
               Cow position:chr8:32621360-32620997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 19

               
               
               Conread position:35-295
               
               
               Cow position:chr8:32967207-32967472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):107, 179

               
               
               Conread position:35-299
               
               
               Cow position:chr8:6438506-6438243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):156, 97

               
               
               Conread position:35-307
               
               
               Cow position:chr8:61098407-61098135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):106, 150

               
               
               Conread position:35-361
               
               
               Cow position:chr8:9640990-9641320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 215

               
               
               Conread position:35-364
               
               
               Cow position:chr8:45071015-45071339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 34

               
               
               Conread position:35-364
               
               
               Cow position:chr8:53642795-53642452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):113, 80

               
               
               Conread position:35-371
               
               
               Cow position:chr8:38464647-38464983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:237
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):71, 148

               
               
               Conread position:35-371
               
               
               Cow position:chr8:42607640-42607305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):115, 158

               
               
               Conread position:35-381
               
               
               Cow position:chr8:23179906-23179558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 94

               
               
               Conread position:35-383
               
               
               Cow position:chr8:6233261-6232912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 206

               
               
               Conread position:35-386
               
               
               Cow position:chr8:33431894-33432242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:245
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):117, 18

               
               
               Conread position:40-307
               
               
               Cow position:chr8:9230239-9229989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:40-327
               
               
               Cow position:chr8:24234774-24235058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:207
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):218, 125

               
               
               Conread position:40-333
               
               
               Cow position:chr8:33400551-33400264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 146

               
               
               Conread position:40-361
               
               
               Cow position:chr8:53363203-53362889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):148, 101

               
               
               Conread position:40-364
               
               
               Cow position:chr8:24497894-24498216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 140

               
               
               Conread position:40-364
               
               
               Cow position:chr8:36398273-36397949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 66

               
               
               Conread position:42-368
               
               
               Cow position:chr8:46235345-46235672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 103

               
               
               Conread position:43-295
               
               
               Cow position:chr8:29262432-29262681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):133, 57

               
               
               Conread position:55-337
               
               
               Cow position:chr8:4563779-4563486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):22, 202

               
               
               Conread position:79-371
               
               
               Cow position:chr8:58519983-58520266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):71, 11

               
               
               Conread position:80-311
               
               
               Cow position:chr8:22183253-22183486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 170

               
               
               Conread position:80-355
               
               
               Cow position:chr8:38254699-38254980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):101, 114

               
               
               Conread position:80-371
               
               
               Cow position:chr8:38572595-38572297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:216
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):108, 54

               
               
               Conread position:81-367
               
               
               Cow position:chr8:50898417-50898704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):112, 166

               
               
               Conread position:84-371
               
               
               Cow position:chr8:25455092-25455381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):104, 96

               
               
               Conread position:84-381
               
               
               Cow position:chr8:10176463-10176162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):59, 171

               
               
               Conread position:97-380
               
               
               Cow position:chr8:554487-554203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:207
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):90, 145

               
               
               Conread position:99-300
               
               
               Cow position:chr8:20311622-20311823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):92, 150

               
               
               Conread position:100-382
               
               
               Cow position:chr8:36375811-36375530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):21, 110

               
               
               Conread position:105-329
               
               
               Cow position:chr8:3887066-3887292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):75, 145

               
               
               Conread position:105-367
               
               
               Cow position:chr8:35966325-35966059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):83, 46

               
               
               Conread position:105-368
               
               
               Cow position:chr8:10970534-10970801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):84, 144

               
               
               Conread position:107-342
               
               
               Cow position:chr8:53251976-53251745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):81, 54

               
               
               Conread position:110-304
               
               
               Cow position:chr8:47169667-47169860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):78, 69

               
               
               Conread position:125-383
               
               
               Cow position:chr8:2814347-2814609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):64, 69

               
               
               Conread position:126-387
               
               
               Cow position:chr8:17103689-17103432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):62, 26

               
               
               Conread position:132-359
               
               
               Cow position:chr8:27648377-27648606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):57, 125

               
               
               Conread position:132-368
               
               
               Cow position:chr8:6816938-6816698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):56, 41

               
               
               Conread position:133-305
               
               
               Cow position:chr8:61157487-61157318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):124, 46

               
               
               Conread position:135-387
               
               
               Cow position:chr8:31775920-31776180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):53, 114

               
               
               Conread position:136-340
               
               
               Cow position:chr8:844198-844002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):52, 29

               
               
               Conread position:142-377
               
               
               Cow position:chr8:47136267-47136031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):45, 67

               
               
               Conread position:142-390
               
               
               Cow position:chr8:55925942-55926191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):46, 107

               
               
               Conread position:148-383
               
               
               Cow position:chr8:24867996-24867757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:149-361
               
               
               Cow position:chr8:47328094-47328310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 100

               
               
               Conread position:149-386
               
               
               Cow position:chr8:34477865-34478109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):34, 104

               
               
               Conread position:150-381
               
               
               Cow position:chr8:57045747-57045514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 107

               
               
               Conread position:151-381
               
               
               Cow position:chr8:3338842-3339071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):156, 34

               
               
               Conread position:154-382
               
               
               Cow position:chr8:28185901-28185671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):34, 102

               
               
               Conread position:170-381
               
               
               Cow position:chr8:35990818-35991034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 82

               
               
               Conread position:187-371
               
               
               Cow position:chr8:37147909-37148095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):108, 61

               
               
               Conread position:187-371
               
               
               Cow position:chr8:39555767-39555954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):68, 61

               
               
               Conread position:27-314
               
               
               Cow position:chr9:54666315-54666030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 108

               
               
               Conread position:31-362
               
               
               Cow position:chr9:32812754-32812419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 51

               
               
               Conread position:33-300
               
               
               Cow position:chr9:1990810-1990540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):59, 218

               
               
               Conread position:33-328
               
               
               Cow position:chr9:22656541-22656838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):158, 216

               
               
               Conread position:33-359
               
               
               Cow position:chr9:24917547-24917217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):66, 22

               
               
               Conread position:34-309
               
               
               Cow position:chr9:38385474-38385743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):157, 99

               
               
               Conread position:34-363
               
               
               Cow position:chr9:36446028-36445702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 148

               
               
               Conread position:34-371
               
               
               Cow position:chr9:23430745-23431078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:239
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):154, 73

               
               
               Conread position:34-371
               
               
               Cow position:chr9:64092087-64091750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):155, 26

               
               
               Conread position:34-376
               
               
               Cow position:chr9:5393441-5393109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:245
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):155, 60

               
               
               Conread position:34-383
               
               
               Cow position:chr9:61023012-61022664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:238
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):154, 36

               
               
               Conread position:34-386
               
               
               Cow position:chr9:11299297-11299639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:258
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):53, 67

               
               
               Conread position:35-333
               
               
               Cow position:chr9:31662869-31662571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 99

               
               
               Conread position:35-362
               
               
               Cow position:chr9:5510127-5509798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 214

               
               
               Conread position:35-364
               
               
               Cow position:chr9:8868733-8869069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 71

               
               
               Conread position:35-371
               
               
               Cow position:chr9:1951867-1952203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 146

               
               
               Conread position:35-378
               
               
               Cow position:chr9:23028203-23027863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 151

               
               
               Conread position:35-388
               
               
               Cow position:chr9:8534283-8534640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 112

               
               
               Conread position:40-306
               
               
               Cow position:chr9:58451709-58451966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):148, 80

               
               
               Conread position:40-362
               
               
               Cow position:chr9:28726333-28726646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):148, 39

               
               
               Conread position:40-379
               
               
               Cow position:chr9:6880168-6879830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:242
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):31, 106

               
               
               Conread position:40-398
               
               
               Cow position:chr9:22361411-22361054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 108

               
               
               Conread position:40-414
               
               
               Cow position:chr9:8998752-8998380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 9

               
               
               Conread position:42-312
               
               
               Cow position:chr9:3169123-3169395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):97, 131

               
               
               Conread position:42-364
               
               
               Cow position:chr9:44466953-44467278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):146, 207

               
               
               Conread position:47-383
               
               
               Cow position:chr9:56453742-56453386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):85, 52

               
               
               Conread position:48-371
               
               
               Cow position:chr9:34957662-34957987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 131

               
               
               Conread position:62-329
               
               
               Cow position:chr9:61997221-61997488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):124, 22

               
               
               Conread position:63-350
               
               
               Cow position:chr9:5621656-5621948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):126, 78

               
               
               Conread position:63-382
               
               
               Cow position:chr9:4929000-4928683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):205, 73

               
               
               Conread position:66-381
               
               
               Cow position:chr9:5763258-5763575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 183

               
               
               Conread position:68-380
               
               
               Cow position:chr9:26404159-26403840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 182

               
               
               Conread position:80-371
               
               
               Cow position:chr9:38344253-38343956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):100, 170

               
               
               Conread position:86-381
               
               
               Cow position:chr9:34666760-34666475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):232, 136

               
               
               Conread position:87-371
               
               
               Cow position:chr9:22151741-22152017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):101, 36

               
               
               Conread position:93-371
               
               
               Cow position:chr9:5319974-5319699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):95, 156

               
               
               Conread position:114-333
               
               
               Cow position:chr9:64155532-64155752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):76, 135

               
               
               Conread position:116-328
               
               
               Cow position:chr9:52819175-52818965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):142, 71

               
               
               Conread position:126-371
               
               
               Cow position:chr9:25958724-25958486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):62, 16

               
               
               Conread position:132-379
               
               
               Cow position:chr9:48343907-48343659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):172, 118

               
               
               Conread position:141-364
               
               
               Cow position:chr9:58133727-58133946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:148-387
               
               
               Cow position:chr9:8338320-8338079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 101

               
               
               Conread position:150-368
               
               
               Cow position:chr9:3070135-3070352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):38, 92

               
               
               Conread position:151-350
               
               
               Cow position:chr9:13670924-13670723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):23, 99

               
               
               Conread position:159-371
               
               
               Cow position:chr9:5532231-5532013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 20

               
               
               Conread position:159-387
               
               
               Cow position:chr9:55287612-55287842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):29, 93

               
               
               Conread position:170-485
               
               
               Cow position:chr9:41995982-41995664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):18, 81

               
               
               Conread position:173-386
               
               
               Cow position:chr9:8546583-8546371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 76

               
               
               Conread position:188-368
               
               
               Cow position:chr9:33119633-33119817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):122, 109

               
               
               Conread position:192-390
               
               
               Cow position:chr9:8563086-8562884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):66, 56

               
               
               Conread position:4-300
               
               
               Cow position:chrX:22873017-22873317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):9, 249

               
               
               Conread position:32-382
               
               
               Cow position:chrX:11806365-11806012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 8

               
               
               Conread position:33-351
               
               
               Cow position:chrX:27590382-27590064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):158, 97

               
               
               Conread position:33-386
               
               
               Cow position:chrX:18898000-18897648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):226, 152

               
               
               Conread position:33-413
               
               
               Cow position:chrX:45786781-45787161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:263
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):225, 172

               
               
               Conread position:34-299
               
               
               Cow position:chrX:30919741-30919474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):75, 7

               
               
               Conread position:34-316
               
               
               Cow position:chrX:32584161-32583877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):157, 165

               
               
               Conread position:34-317
               
               
               Cow position:chrX:32978605-32978321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 192

               
               
               Conread position:34-355
               
               
               Cow position:chrX:27105910-27106237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:226
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):153, 215

               
               
               Conread position:34-364
               
               
               Cow position:chrX:11655730-11656075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 225

               
               
               Conread position:34-371
               
               
               Cow position:chrX:17497748-17498073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):154, 208

               
               
               Conread position:34-377
               
               
               Cow position:chrX:25035734-25035384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:246
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):153, 93

               
               
               Conread position:34-380
               
               
               Cow position:chrX:40452561-40452212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 215

               
               
               Conread position:34-381
               
               
               Cow position:chrX:34754540-34754187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 218

               
               
               Conread position:34-381
               
               
               Cow position:chrX:42462096-42461743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 217

               
               
               Conread position:34-382
               
               
               Cow position:chrX:37232063-37232414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 96

               
               
               Conread position:34-390
               
               
               Cow position:chrX:34401650-34402006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 72

               
               
               Conread position:35-295
               
               
               Cow position:chrX:33803362-33803099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):108, 60

               
               
               Conread position:35-317
               
               
               Cow position:chrX:45043211-45043497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):154, 224

               
               
               Conread position:35-348
               
               
               Cow position:chrX:7806031-7806345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):145, 83

               
               
               Conread position:35-361
               
               
               Cow position:chrX:21592939-21593268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 98

               
               
               Conread position:35-367
               
               
               Cow position:chrX:42507991-42507657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 99

               
               
               Conread position:35-369
               
               
               Cow position:chrX:30543629-30543300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):223, 130

               
               
               Conread position:35-371
               
               
               Cow position:chrX:38439127-38439468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 45

               
               
               Conread position:35-383
               
               
               Cow position:chrX:37489371-37489725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):105, 219

               
               
               Conread position:35-386
               
               
               Cow position:chrX:10437998-10437662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):68, 100

               
               
               Conread position:35-386
               
               
               Cow position:chrX:42994267-42994618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 187

               
               
               Conread position:35-387
               
               
               Cow position:chrX:23564144-23563786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 214

               
               
               Conread position:35-387
               
               
               Cow position:chrX:32309754-32310111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:240
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):109, 218

               
               
               Conread position:35-387
               
               
               Cow position:chrX:41743566-41743919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:248
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):153, 144

               
               
               Conread position:35-423
               
               
               Cow position:chrX:11844585-11844205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 99

               
               
               Conread position:40-354
               
               
               Cow position:chrX:44731258-44731571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):135, 98

               
               
               Conread position:40-364
               
               
               Cow position:chrX:15139890-15139562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):87, 73

               
               
               Conread position:40-371
               
               
               Cow position:chrX:1616393-1616054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 212

               
               
               Conread position:40-386
               
               
               Cow position:chrX:40558018-40557674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 198

               
               
               Conread position:42-316
               
               
               Cow position:chrX:36778065-36778343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):93, 215

               
               
               Conread position:42-415
               
               
               Cow position:chrX:35388247-35387869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 208

               
               
               Conread position:43-383
               
               
               Cow position:chrX:45501809-45502147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):144, 206

               
               
               Conread position:43-406
               
               
               Cow position:chrX:20878102-20877737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:254
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):148, 206

               
               
               Conread position:45-362
               
               
               Cow position:chrX:3654271-3654589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):143, 81

               
               
               Conread position:45-377
               
               
               Cow position:chrX:14884299-14883962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:238
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):107, 27

               
               
               Conread position:47-369
               
               
               Cow position:chrX:38007103-38006776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 195

               
               
               Conread position:48-364
               
               
               Cow position:chrX:7645924-7646236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):126, 196

               
               
               Conread position:54-329
               
               
               Cow position:chrX:42855083-42855359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 80

               
               
               Conread position:55-363
               
               
               Cow position:chrX:25337850-25338167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):95, 196

               
               
               Conread position:55-381
               
               
               Cow position:chrX:7508800-7509142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):86, 18

               
               
               Conread position:62-367
               
               
               Cow position:chrX:29289256-29289565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 187

               
               
               Conread position:80-387
               
               
               Cow position:chrX:20709773-20710080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):111, 54

               
               
               Conread position:83-371
               
               
               Cow position:chrX:35273045-35273344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):93, 292

               
               
               Conread position:86-300
               
               
               Cow position:chrX:46606806-46606595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):195, 105

               
               
               Conread position:105-365
               
               
               Cow position:chrX:9997608-9997351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):85, 22

               
               
               Conread position:105-371
               
               
               Cow position:chrX:42874701-42874974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):153, 143

               
               
               Conread position:107-364
               
               
               Cow position:chrX:7496974-7497223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):37, 16

               
               
               Conread position:115-376
               
               
               Cow position:chrX:40183617-40183349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):73, 134

               
               
               Conread position:128-316
               
               
               Cow position:chrX:48536920-48536731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):21, 121

               
               
               Conread position:129-371
               
               
               Cow position:chrX:7721730-7721979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):19, 15

               
               
               Conread position:135-386
               
               
               Cow position:chrX:27432166-27431909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):53, 124

               
               
               Conread position:141-355
               
               
               Cow position:chrX:21663068-21663285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):125, 107

               
               
               Conread position:141-367
               
               
               Cow position:chrX:9416934-9416706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):48, 101

               
               
               Conread position:142-380
               
               
               Cow position:chrX:21672311-21672555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):48, 107

               
               
               Conread position:147-372
               
               
               Cow position:chrX:27772191-27771973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):160, 36

               
               
               Conread position:148-317
               
               
               Cow position:chrX:42499263-42499094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:148-339
               
               
               Cow position:chrX:9855066-9855261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):40, 64

               
               
               Conread position:148-339
               
               
               Cow position:chrX:9953907-9954102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):40, 64

               
               
               Conread position:148-371
               
               
               Cow position:chrX:38549214-38549437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:148-382
               
               
               Cow position:chrX:41884652-41884413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:148-386
               
               
               Cow position:chrX:23514252-23514010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):41, 51

               
               
               Conread position:148-394
               
               
               Cow position:chrX:619242-618989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):41, 101

               
               
               Conread position:149-361
               
               
               Cow position:chrX:9201314-9201530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):37, 32

               
               
               Conread position:154-309
               
               
               Cow position:chrX:18812030-18812179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):140, 25

               
               
               Conread position:154-364
               
               
               Cow position:chrX:17662825-17662610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):34, 84

               
               
               Conread position:154-371
               
               
               Cow position:chrX:37048809-37048587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):35, 97

               
               
               Conread position:157-333
               
               
               Cow position:chrX:16541901-16541723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):31, 23

               
               
               Conread position:159-386
               
               
               Cow position:chrX:1499446-1499670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):29, 83

               
               
               Conread position:162-371
               
               
               Cow position:chrX:29602053-29601840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):12, 27

               
               
               Conread position:191-383
               
               
               Cow position:chrX:31311835-31312031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 57
Conread position:	7-356
Cow position:	chr1:53495067-53495423 (view UCSC Genome Browser custom track)
Alignm length:	359
Alignm identity:	251
Alignm E-value:	0
Alignm gaps (pig, cow):	13, 34
Conread position:	13-390
Cow position:	chr1:41004754-41004373 (view UCSC Genome Browser custom track)
Alignm length:	386
Alignm identity:	266
Alignm E-value:	0
Alignm gaps (pig, cow):	222, 21
Conread position:	33-359
Cow position:	chr1:18196487-18196819 (view UCSC Genome Browser custom track)
Alignm length:	334
Alignm identity:	223
Alignm E-value:	9e-38
Alignm gaps (pig, cow):	158, 216
Conread position:	33-397
Cow position:	chr1:9593524-9593163 (view UCSC Genome Browser custom track)
Alignm length:	372
Alignm identity:	254
Alignm E-value:	9.99967e-42
Alignm gaps (pig, cow):	225, 140
Conread position:	34-299
Cow position:	chr1:54295032-54294763 (view UCSC Genome Browser custom track)
Alignm length:	271
Alignm identity:	196
Alignm E-value:	5.00264e-43
Alignm gaps (pig, cow):	111, 218
Conread position:	34-329
Cow position:	chr1:40062079-40062376 (view UCSC Genome Browser custom track)
Alignm length:	298
Alignm identity:	208
Alignm E-value:	5.60519e-45
Alignm gaps (pig, cow):	33, 0
Conread position:	34-339
Cow position:	chr1:23623785-23624110 (view UCSC Genome Browser custom track)
Alignm length:	327
Alignm identity:	226
Alignm E-value:	2e-34
Alignm gaps (pig, cow):	19, 226
Conread position:	34-350
Cow position:	chr1:4026820-4027141 (view UCSC Genome Browser custom track)
Alignm length:	328
Alignm identity:	229
Alignm E-value:	1e-39
Alignm gaps (pig, cow):	154, 102
Conread position:	34-363
Cow position:	chr1:11854058-11853723 (view UCSC Genome Browser custom track)
Alignm length:	337
Alignm identity:	232
Alignm E-value:	5.60519e-45
Alignm gaps (pig, cow):	153, 215
Conread position:	34-364
Cow position:	chr1:53397616-53397948 (view UCSC Genome Browser custom track)
Alignm length:	337
Alignm identity:	230
Alignm E-value:	9.99995e-41
Alignm gaps (pig, cow):	146, 210
Conread position:	34-368
Cow position:	chr1:93499255-93499590 (view UCSC Genome Browser custom track)
Alignm length:	338
Alignm identity:	235
Alignm E-value:	0
Alignm gaps (pig, cow):	154, 47
Conread position:	34-371
Cow position:	chr1:12596272-12595934 (view UCSC Genome Browser custom track)
Alignm length:	347
Alignm identity:	244
Alignm E-value:	1.96182e-44
Alignm gaps (pig, cow):	108, 178
Conread position:	34-376
Cow position:	chr1:22728681-22729026 (view UCSC Genome Browser custom track)
Alignm length:	350
Alignm identity:	250
Alignm E-value:	0
Alignm gaps (pig, cow):	154, 55
Conread position:	34-382
Cow position:	chr1:41696693-41697039 (view UCSC Genome Browser custom track)
Alignm length:	355
Alignm identity:	248
Alignm E-value:	0
Alignm gaps (pig, cow):	224, 120
Conread position:	34-383
Cow position:	chr1:31341422-31341068 (view UCSC Genome Browser custom track)
Alignm length:	356
Alignm identity:	245
Alignm E-value:	0
Alignm gaps (pig, cow):	149, 342
Conread position:	34-386
Cow position:	chr1:61725481-61725130 (view UCSC Genome Browser custom track)
Alignm length:	359
Alignm identity:	260
Alignm E-value:	0
Alignm gaps (pig, cow):	154, 215
Conread position:	35-307
Cow position:	chr1:50634778-50634499 (view UCSC Genome Browser custom track)
Alignm length:	284
Alignm identity:	190
Alignm E-value:	3e-27
Alignm gaps (pig, cow):	115, 66
Conread position:	35-333
Cow position:	chr1:33716854-33717156 (view UCSC Genome Browser custom track)
Alignm length:	305
Alignm identity:	215
Alignm E-value:	5.00264e-43
Alignm gaps (pig, cow):	110, 30
Conread position:	35-345
Cow position:	chr1:22826800-22827110 (view UCSC Genome Browser custom track)
Alignm length:	319
Alignm identity:	227
Alignm E-value:	1.99965e-42
Alignm gaps (pig, cow):	117, 96
Conread position:	35-347
Cow position:	chr1:14561318-14561000 (view UCSC Genome Browser custom track)
Alignm length:	321
Alignm identity:	205
Alignm E-value:	6e-24
Alignm gaps (pig, cow):	109, 217